FC930044

Overview
NameFC930044
Unique NameFC930044
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9377 contig Ccv1_Contig9377:1..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930044 vs. ExPASy Swiss-Prot
Match: HDT1_ARATH (Histone deacetylase HDT1 OS=Arabidopsis thaliana GN=HDT1 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.889e-30
Identity = 67/120 (55.83%), Postives = 87/120 (72.50%), Query Frame = 2
Query:   53 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEGQEELPS 412
            MEFWG+EVK+G+P+ V P    +IH+SQASLGE K +KG + VPL VK G++ LVLGTL  ENIPQL  DLVF+KEFELSH W  GS+YF GY+TP    + +     + +EE +EE+P+
Sbjct:    1 MEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECKNKKG-EFVPLHVKVGNQNLVLGTLSTENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYKTP----NIEPQGYSEEEEEEEEEVPA 115          
BLAST of FC930044 vs. ExPASy Swiss-Prot
Match: HDT1_SOLCH (Histone deacetylase HDT1 OS=Solanum chacoense GN=HDT1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.036e-28
Identity = 65/115 (56.52%), Postives = 82/115 (71.30%), Query Frame = 2
Query:   53 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQ--TPLPMDSSDEFDMGDSDEE 391
            MEFWG EVK+G+PL V+P    ++HLSQASLGE KK+K  +SV L V    KKLVLGTL  E +PQ  FDLVF+++FELSHN K+GS+YF GY+   P   +  DE D  +SDE+
Sbjct:    1 MEFWGAEVKSGEPLTVQPGDGMVLHLSQASLGELKKDKS-ESVCLSVNIDGKKLVLGTLNSEKVPQQQFDLVFDRDFELSHNLKSGSVYFFGYKATNPFEEEEDDEDDYDESDED 114          
BLAST of FC930044 vs. ExPASy Swiss-Prot
Match: HDT2_MAIZE (Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.267e-26
Identity = 61/121 (50.41%), Postives = 80/121 (66.12%), Query Frame = 2
Query:   53 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEGQEELPSI 415
            MEFWG+EVK G  +K +P    I+H+SQA+LGESKK    DS  ++VK  DKKL +GTL  +  PQ+ FDLVF KEFELSH  K  S++F GY+   P++  DE D+   DEE +  +P I
Sbjct:    1 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKS---DSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQPIE-GDEMDLDSEDEEEELNIPVI 117          
BLAST of FC930044 vs. ExPASy Swiss-Prot
Match: HDT3_MAIZE (Histone deacetylase HDT3 OS=Zea mays GN=HDT3 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.072e-25
Identity = 55/121 (45.45%), Postives = 81/121 (66.94%), Query Frame = 2
Query:   53 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEGQEELPSI 415
            MEFWG+EVK G  +K +P +  ++HLSQA+LGESKK    D+  ++VK  D+KL +GTL  +  P + FDL+F+KEFELSH  K  S++F GY+   P +  DE D+   DE+ +  +P++
Sbjct:    1 MEFWGLEVKPGSTVKCEPGYGFVLHLSQAALGESKKS---DNALMYVKIDDQKLAIGTLSVDKNPHIQFDLIFDKEFELSHTSKTTSVFFTGYKVEQPFE-EDEMDLDSEDEDEELNVPAV 117          
BLAST of FC930044 vs. ExPASy Swiss-Prot
Match: HDT1_SOYBN (Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.389e-25
Identity = 58/118 (49.15%), Postives = 82/118 (69.49%), Query Frame = 2
Query:   53 MEFWGVEVKAGQPLKVKPN--FDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEGQE 400
            MEFWGVEVK GQ + V P    D+ IH+SQ +LGE+KK+K ++ V L++K G++K+VLGTL  + IP LS DLV + + ELSH  K+ S++FCGY+     D++ +F   DS EE +E
Sbjct:    1 MEFWGVEVKVGQTVTVDPMDPVDSYIHISQVALGEAKKDKPNEPVVLYLKVGEQKIVLGTLSRDGIPHLSLDLVLDSDSELSHTSKSASVFFCGYKVLTGNDNASDF--SDSSEEDEE 116          
BLAST of FC930044 vs. ExPASy Swiss-Prot
Match: HDT1_MAIZE (Histone deacetylase HDT1 OS=Zea mays GN=HDT1 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.389e-25
Identity = 55/121 (45.45%), Postives = 80/121 (66.12%), Query Frame = 2
Query:   53 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEGQEELPSI 415
            MEFWG+EVK G  +K +P +  ++HLSQA+LGESKK    D+  ++VK  D+KL +GTL  +  P + FDL+F+KEFELSH  K  S++F GY+   P +  DE D+   DE+ +  +P +
Sbjct:    1 MEFWGLEVKPGSTVKCEPGYGFVLHLSQAALGESKKS---DNALMYVKIDDQKLAIGTLSVDKNPHIQFDLIFDKEFELSHTSKTTSVFFTGYKVEQPFE-EDEMDLDSEDEDEELNVPVV 117          
BLAST of FC930044 vs. ExPASy Swiss-Prot
Match: HDT3_ARATH (Histone deacetylase HDT3 OS=Arabidopsis thaliana GN=HDT3 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.712e-23
Identity = 53/108 (49.07%), Postives = 71/108 (65.74%), Query Frame = 2
Query:   53 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQT----PLPMDSSDE 364
            MEFWGVEVK G+PL + P  D ++H+SQ +LGESK     + + L+V  G  KL++GTL  E  PQLS ++V E+ F LSH WKNGS++F GY+     P P D  D+
Sbjct:    1 MEFWGVEVKNGKPLHLDPGLDRLVHISQVALGESKNNVT-EPIQLYVTVGSDKLLIGTLSHEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKVDASDPEPEDLIDD 107          
BLAST of FC930044 vs. ExPASy Swiss-Prot
Match: HDT2_ARATH (Histone deacetylase HDT2 OS=Arabidopsis thaliana GN=HDT2 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.155e-20
Identity = 55/120 (45.83%), Postives = 75/120 (62.50%), Query Frame = 2
Query:   53 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEGQEELPS 412
            MEFWGV V      KV P  D+++H+SQASL  + K    +SV L V  G  KLV+GTL  +  PQ+SFDLVF+KEFELSH+    +++F GY++  P    D+F   D DE+  E +P+
Sbjct:    1 MEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKSG--ESVVLSVTVGGAKLVIGTLSQDKFPQISFDLVFDKEFELSHSGTKANVHFIGYKS--PNIEQDDFTSSD-DEDVPEAVPA 115          
BLAST of FC930044 vs. ExPASy Swiss-Prot
Match: HDT4_ARATH (Histone deacetylase HDT4 OS=Arabidopsis thaliana GN=HDT4 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.314e-15
Identity = 49/119 (41.18%), Postives = 69/119 (57.98%), Query Frame = 2
Query:   53 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKK--LVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMG-DSDEEGQE 400
            MEFWG+E+K G+P KV      ++H SQ +LG+ +K K  ++  ++VK GD +   ++G L  +  PQ S DL    EFE+SHN    S+Y  GY+T    D+ DE D   DSD E  E
Sbjct:    1 MEFWGIEIKPGKPFKVIQKDGFMVHASQVTLGDVEKVKKDETFAVYVKIGDDENGFMIGNL-SQKFPQFSIDLYLGHEFEISHN-STSSVYLIGYRT---FDAFDELDEEIDSDSELDE 114          
The following BLAST results are available for this feature:
BLAST of FC930044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
HDT1_ARATH1.889e-3055.83Histone deacetylase HDT1 OS=Arabidopsis thaliana G... [more]
HDT1_SOLCH1.036e-2856.52Histone deacetylase HDT1 OS=Solanum chacoense GN=H... [more]
HDT2_MAIZE1.267e-2650.41Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 ... [more]
HDT3_MAIZE1.072e-2545.45Histone deacetylase HDT3 OS=Zea mays GN=HDT3 PE=2 ... [more]
HDT1_SOYBN2.389e-2549.15Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE... [more]
HDT1_MAIZE2.389e-2545.45Histone deacetylase HDT1 OS=Zea mays GN=HDT1 PE=1 ... [more]
HDT3_ARATH1.712e-2349.07Histone deacetylase HDT3 OS=Arabidopsis thaliana G... [more]
HDT2_ARATH5.155e-2045.83Histone deacetylase HDT2 OS=Arabidopsis thaliana G... [more]
HDT4_ARATH1.314e-1541.18Histone deacetylase HDT4 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionC34003B10EF PostHarvC1 Citrus clementina cDNA clone C34003B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930044 ID=FC930044; Name=FC930044; organism=Citrus clementina; type=EST; length=660bp
TCTCTATCTTACTCTCTTCACTCTAACACACGTATCCCGTCAGTCATCTT
CGATGGAGTTTTGGGGTGTTGAAGTTAAGGCTGGGCAGCCTCTTAAAGTG
AAACCTAACTTTGACAATATCATCCATCTTTCACAGGCATCACTTGGTGA
GTCAAAGAAAGAGAAAGGACATGATTCTGTGCCCCTCTTTGTGAAGTTTG
GTGACAAGAAGCTTGTTCTTGGAACACTTATCCCTGAAAATATCCCTCAA
TTATCTTTTGATCTAGTTTTTGAGAAAGAGTTTGAGCTTTCTCACAACTG
GAAGAACGGGAGTATCTACTTTTGTGGTTACCAGACCCCTTTGCCTATGG
ATAGTTCAGATGAATTTGATATGGGGGACTCTGATGAAGAAGGGCAAGAG
GAGCTTCCTTCCATTACTGCTGCAGCAGAGAACGGAAAAGCTGGGCAAAA
GGCTGAGAAAGCAAAGGCTGCTACTCCCATGGCTATCCCGGCTGCTAAGC
CTGCTAAGCTGATTAAGGATGTGAAACCCAAAGAAGATGGTGACGATGAA
TCAGATGATGAAGATGACTCAGATGATGAGATGGTTGATGGAGATGATTC
TGATGAGATTTCTGGTGAGGATGATTCTGATGATGACGACGAGGATGATT
CAGAAGATGA
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