FC930044
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930044 vs. ExPASy Swiss-Prot
Match: HDT1_ARATH (Histone deacetylase HDT1 OS=Arabidopsis thaliana GN=HDT1 PE=1 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.889e-30 Identity = 67/120 (55.83%), Postives = 87/120 (72.50%), Query Frame = 2 Query: 53 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEGQEELPS 412 MEFWG+EVK+G+P+ V P +IH+SQASLGE K +KG + VPL VK G++ LVLGTL ENIPQL DLVF+KEFELSH W GS+YF GY+TP + + + +EE +EE+P+ Sbjct: 1 MEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECKNKKG-EFVPLHVKVGNQNLVLGTLSTENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYKTP----NIEPQGYSEEEEEEEEEVPA 115
BLAST of FC930044 vs. ExPASy Swiss-Prot
Match: HDT1_SOLCH (Histone deacetylase HDT1 OS=Solanum chacoense GN=HDT1 PE=2 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.036e-28 Identity = 65/115 (56.52%), Postives = 82/115 (71.30%), Query Frame = 2 Query: 53 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQ--TPLPMDSSDEFDMGDSDEE 391 MEFWG EVK+G+PL V+P ++HLSQASLGE KK+K +SV L V KKLVLGTL E +PQ FDLVF+++FELSHN K+GS+YF GY+ P + DE D +SDE+ Sbjct: 1 MEFWGAEVKSGEPLTVQPGDGMVLHLSQASLGELKKDKS-ESVCLSVNIDGKKLVLGTLNSEKVPQQQFDLVFDRDFELSHNLKSGSVYFFGYKATNPFEEEEDDEDDYDESDED 114
BLAST of FC930044 vs. ExPASy Swiss-Prot
Match: HDT2_MAIZE (Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.267e-26 Identity = 61/121 (50.41%), Postives = 80/121 (66.12%), Query Frame = 2 Query: 53 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEGQEELPSI 415 MEFWG+EVK G +K +P I+H+SQA+LGESKK DS ++VK DKKL +GTL + PQ+ FDLVF KEFELSH K S++F GY+ P++ DE D+ DEE + +P I Sbjct: 1 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKS---DSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQPIE-GDEMDLDSEDEEEELNIPVI 117
BLAST of FC930044 vs. ExPASy Swiss-Prot
Match: HDT3_MAIZE (Histone deacetylase HDT3 OS=Zea mays GN=HDT3 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.072e-25 Identity = 55/121 (45.45%), Postives = 81/121 (66.94%), Query Frame = 2 Query: 53 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEGQEELPSI 415 MEFWG+EVK G +K +P + ++HLSQA+LGESKK D+ ++VK D+KL +GTL + P + FDL+F+KEFELSH K S++F GY+ P + DE D+ DE+ + +P++ Sbjct: 1 MEFWGLEVKPGSTVKCEPGYGFVLHLSQAALGESKKS---DNALMYVKIDDQKLAIGTLSVDKNPHIQFDLIFDKEFELSHTSKTTSVFFTGYKVEQPFE-EDEMDLDSEDEDEELNVPAV 117
BLAST of FC930044 vs. ExPASy Swiss-Prot
Match: HDT1_SOYBN (Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.389e-25 Identity = 58/118 (49.15%), Postives = 82/118 (69.49%), Query Frame = 2 Query: 53 MEFWGVEVKAGQPLKVKPN--FDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEGQE 400 MEFWGVEVK GQ + V P D+ IH+SQ +LGE+KK+K ++ V L++K G++K+VLGTL + IP LS DLV + + ELSH K+ S++FCGY+ D++ +F DS EE +E Sbjct: 1 MEFWGVEVKVGQTVTVDPMDPVDSYIHISQVALGEAKKDKPNEPVVLYLKVGEQKIVLGTLSRDGIPHLSLDLVLDSDSELSHTSKSASVFFCGYKVLTGNDNASDF--SDSSEEDEE 116
BLAST of FC930044 vs. ExPASy Swiss-Prot
Match: HDT1_MAIZE (Histone deacetylase HDT1 OS=Zea mays GN=HDT1 PE=1 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.389e-25 Identity = 55/121 (45.45%), Postives = 80/121 (66.12%), Query Frame = 2 Query: 53 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEGQEELPSI 415 MEFWG+EVK G +K +P + ++HLSQA+LGESKK D+ ++VK D+KL +GTL + P + FDL+F+KEFELSH K S++F GY+ P + DE D+ DE+ + +P + Sbjct: 1 MEFWGLEVKPGSTVKCEPGYGFVLHLSQAALGESKKS---DNALMYVKIDDQKLAIGTLSVDKNPHIQFDLIFDKEFELSHTSKTTSVFFTGYKVEQPFE-EDEMDLDSEDEDEELNVPVV 117
BLAST of FC930044 vs. ExPASy Swiss-Prot
Match: HDT3_ARATH (Histone deacetylase HDT3 OS=Arabidopsis thaliana GN=HDT3 PE=1 SV=2) HSP 1 Score: 109.383 bits (272), Expect = 1.712e-23 Identity = 53/108 (49.07%), Postives = 71/108 (65.74%), Query Frame = 2 Query: 53 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQT----PLPMDSSDE 364 MEFWGVEVK G+PL + P D ++H+SQ +LGESK + + L+V G KL++GTL E PQLS ++V E+ F LSH WKNGS++F GY+ P P D D+ Sbjct: 1 MEFWGVEVKNGKPLHLDPGLDRLVHISQVALGESKNNVT-EPIQLYVTVGSDKLLIGTLSHEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKVDASDPEPEDLIDD 107
BLAST of FC930044 vs. ExPASy Swiss-Prot
Match: HDT2_ARATH (Histone deacetylase HDT2 OS=Arabidopsis thaliana GN=HDT2 PE=1 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 5.155e-20 Identity = 55/120 (45.83%), Postives = 75/120 (62.50%), Query Frame = 2 Query: 53 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEGQEELPS 412 MEFWGV V KV P D+++H+SQASL + K +SV L V G KLV+GTL + PQ+SFDLVF+KEFELSH+ +++F GY++ P D+F D DE+ E +P+ Sbjct: 1 MEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKSG--ESVVLSVTVGGAKLVIGTLSQDKFPQISFDLVFDKEFELSHSGTKANVHFIGYKS--PNIEQDDFTSSD-DEDVPEAVPA 115
BLAST of FC930044 vs. ExPASy Swiss-Prot
Match: HDT4_ARATH (Histone deacetylase HDT4 OS=Arabidopsis thaliana GN=HDT4 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.314e-15 Identity = 49/119 (41.18%), Postives = 69/119 (57.98%), Query Frame = 2 Query: 53 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKK--LVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMG-DSDEEGQE 400 MEFWG+E+K G+P KV ++H SQ +LG+ +K K ++ ++VK GD + ++G L + PQ S DL EFE+SHN S+Y GY+T D+ DE D DSD E E Sbjct: 1 MEFWGIEIKPGKPFKVIQKDGFMVHASQVTLGDVEKVKKDETFAVYVKIGDDENGFMIGNL-SQKFPQFSIDLYLGHEFEISHN-STSSVYLIGYRT---FDAFDELDEEIDSDSELDE 114 The following BLAST results are available for this feature:
BLAST of FC930044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930044 ID=FC930044; Name=FC930044; organism=Citrus clementina; type=EST; length=660bpback to top |