FC930049

Overview
NameFC930049
Unique NameFC930049
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15332 contig Ccv1_Contig15332:106..787. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CYSK_CITLA (Cysteine synthase OS=Citrullus lanatus PE=2 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 1.479e-89
Identity = 163/180 (90.56%), Postives = 172/180 (95.56%), Query Frame = 2
Query:  143 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            S IAKDVTELIG TPLVYLNR+VDGCVAR+AAKLEMMEPCSSVKDRIGYSMI+DAE KGLI PGESVLIEPTSGNTGIGLAF+AAAKGYRLII MPASMSLERR +L AFGAELVLTDPARGMKGAVQKAEEI+ KTPNSY+LQQFENPANPKIHYETTGPEIW+G+GGKIDALVSGIGT
Sbjct:    6 STIAKDVTELIGNTPLVYLNRVVDGCVARVAAKLEMMEPCSSVKDRIGYSMISDAENKGLITPGESVLIEPTSGNTGIGLAFIAAAKGYRLIICMPASMSLERRTILRAFGAELVLTDPARGMKGAVQKAEEIKAKTPNSYILQQFENPANPKIHYETTGPEIWRGSGGKIDALVSGIGT 185          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CYSK_SPIOL (Cysteine synthase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 2.361e-87
Identity = 157/178 (88.20%), Postives = 168/178 (94.38%), Query Frame = 2
Query:  149 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            IAKDVTELIGKTPLVYLN + DGCVAR+AAKLE MEPCSSVKDRIG+SMI DAE+ GLI PGESVLIEPTSGNTGIGLAF+AAAKGY+LIITMPASMSLERR +L AFGAEL+LTDPA+GMKGAVQKAEEIRDKTPNSY+LQQFENPANPK+HYETTGPEIWKGTGGKID  VSGIGT
Sbjct:    8 IAKDVTELIGKTPLVYLNTVADGCVARVAAKLEGMEPCSSVKDRIGFSMITDAEKSGLITPGESVLIEPTSGNTGIGLAFIAAAKGYKLIITMPASMSLERRTILRAFGAELILTDPAKGMKGAVQKAEEIRDKTPNSYILQQFENPANPKVHYETTGPEIWKGTGGKIDIFVSGIGT 185          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CYSK_SOLTU (Cysteine synthase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.692e-85
Identity = 152/178 (85.39%), Postives = 167/178 (93.82%), Query Frame = 2
Query:  149 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            IAKDVTELIG TPLVYLN +VDGCVAR+AAKLE MEPCSSVKDRIGYSMI DAEEKGLI+PGESVLIEPTSGNTG+GLAFMAAAKGY+LIITMP+SMSLERR++L  F +ELVLTDPA+GMKGA+ KAEEI+ KTPNSY+LQQFENPANPKIHYETTGPEIWKG+ GK+DAL SGIGT
Sbjct:    8 IAKDVTELIGNTPLVYLNNVVDGCVARVAAKLESMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGVGLAFMAAAKGYKLIITMPSSMSLERRIILRGFRSELVLTDPAKGMKGAISKAEEIKAKTPNSYILQQFENPANPKIHYETTGPEIWKGSNGKVDALASGIGT 185          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CYSK1_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS1 PE=2 SV=2)

HSP 1 Score: 313.538 bits (802), Expect = 6.429e-85
Identity = 152/178 (85.39%), Postives = 165/178 (92.70%), Query Frame = 2
Query:  149 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            IAKDVTELIG TPLVYLNR+ DGCV R+AAKLE MEPCSSVKDRIGYSMI DAEEKGLI PG+SVLIEPTSGNTGIGLAFMAAAKGYRL++TMPASMS+ERR++L AFGAEL+LTDP  GMKGAVQKAEE+  KT NS++LQQFENPANPKIHYETTGPEIWKGTGGK+D LVSGIGT
Sbjct:    5 IAKDVTELIGNTPLVYLNRVTDGCVGRVAAKLESMEPCSSVKDRIGYSMITDAEEKGLITPGKSVLIEPTSGNTGIGLAFMAAAKGYRLVLTMPASMSMERRIILKAFGAELILTDPLLGMKGAVQKAEELAAKTNNSFILQQFENPANPKIHYETTGPEIWKGTGGKVDGLVSGIGT 182          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CYSK1_ARATH (Cysteine synthase OS=Arabidopsis thaliana GN=OASA1 PE=1 SV=2)

HSP 1 Score: 312.768 bits (800), Expect = 1.097e-84
Identity = 152/180 (84.44%), Postives = 166/180 (92.22%), Query Frame = 2
Query:  143 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            S IAKDVTELIG TPLVYLN + +GCV R+AAKLEMMEPCSSVKDRIG+SMI+DAE+KGLI+PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS ERR++LLAFG ELVLTDPA+GMKGA+ KAEEI  KTPN Y+LQQFENPANPKIHYETTGPEIWKGTGGKID  VSGIGT
Sbjct:    3 SRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGT 182          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CYSK_WHEAT (Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=2 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 1.432e-84
Identity = 152/178 (85.39%), Postives = 164/178 (92.13%), Query Frame = 2
Query:  149 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            IAKDVTELIG TPLVYLN++ DGCV R+AAKLE MEPCSSVKDRIGYSMI DAEEKG I PG+SVLIEPTSGNTGIGLAFMAAAKGYRL++TMPASMS+ERR++L AFGAEL+LTDP  GMKGAVQKAEE+  KTPNSY+LQQFEN ANPKIHYETTGPEIWKGTGGKID LVSGIGT
Sbjct:    9 IAKDVTELIGNTPLVYLNKVTDGCVGRVAAKLESMEPCSSVKDRIGYSMITDAEEKGFIVPGKSVLIEPTSGNTGIGLAFMAAAKGYRLVLTMPASMSMERRIILKAFGAELILTDPLLGMKGAVQKAEELAAKTPNSYILQQFENAANPKIHYETTGPEIWKGTGGKIDGLVSGIGT 186          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CYSK1_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 3.190e-84
Identity = 151/180 (83.89%), Postives = 166/180 (92.22%), Query Frame = 2
Query:  143 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            S IAKDVTELIG TPLVYLN + +GCV R+AAKLEMMEPCSSVKDRIG+SMI+DAE+KGLI+PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS+ERR++LLAFG ELVLTDPA+GMKGA+ KAEEI  KTPN Y+LQQFENPANPKIHYETTGPEIWKGT GKID  VSGIGT
Sbjct:    3 SRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEQKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSVERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTDGKIDGFVSGIGT 182          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CYSK2_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 3.527e-83
Identity = 148/178 (83.15%), Postives = 164/178 (92.13%), Query Frame = 2
Query:  149 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            IA DVTELIG TPLVYLN + +GCV R+AAKLEMMEPCSSVKDRIG+SMI+DAE+KGLI+PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS+ERR++LLAFG ELVLTDPA+GMKGA+ KAEEI  KTPN Y+LQQFENPANPKIHYETTGPEIWKGT GKID  +SGIGT
Sbjct:    7 IANDVTELIGNTPLVYLNSVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSIERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTEGKIDGFISGIGT 184          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CYSK_MAIZE (Cysteine synthase OS=Zea mays PE=1 SV=2)

HSP 1 Score: 305.834 bits (782), Expect = 1.340e-82
Identity = 151/178 (84.83%), Postives = 161/178 (90.45%), Query Frame = 2
Query:  149 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            IAKDVTELIG TPLVYLN++ DGCV R  AKLE MEPCSSVKDRIGYSMI DAEEKGLI PG SVLIEPTSGNTGIGLAFMAAAKGY+L +TMPASMS+ERR++L AFGAELVLTDP  GMKGAV+KAEEI+ KTPNSY+LQQFENPANPKIHYETTGPEIWK T GKID LVSGIGT
Sbjct:    8 IAKDVTELIGNTPLVYLNKVTDGCVGRSRAKLESMEPCSSVKDRIGYSMITDAEEKGLITPGVSVLIEPTSGNTGIGLAFMAAAKGYKLTLTMPASMSMERRIILKAFGAELVLTDPLLGMKGAVKKAEEIQAKTPNSYILQQFENPANPKIHYETTGPEIWKATAGKIDGLVSGIGT 185          
BLAST of FC930049 vs. ExPASy Swiss-Prot
Match: CYSK2_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS3 PE=2 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 3.900e-82
Identity = 148/178 (83.15%), Postives = 163/178 (91.57%), Query Frame = 2
Query:  149 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGPEIWKGTGGKIDALVSGIGT 682
            IA DVT LIG TPLVYLN++VDGC A+IAAKLE+MEPCSSVKDRIGYSMI DAEEKGLI PG+SVLIEPTSGNTGIGLAFMAAAKGY+LI+TMPASMS+ERR++L AFGAELVLTDP  GMKGA+QKA+E+  K PNSY+LQQFENPANPKIHYETTGPEIWK T GK+D LVSGIGT
Sbjct:    8 IASDVTALIGNTPLVYLNKVVDGCEAQIAAKLEIMEPCSSVKDRIGYSMITDAEEKGLITPGKSVLIEPTSGNTGIGLAFMAAAKGYKLILTMPASMSMERRIILKAFGAELVLTDPLLGMKGAIQKADELAAKMPNSYILQQFENPANPKIHYETTGPEIWKATAGKVDILVSGIGT 185          
The following BLAST results are available for this feature:
BLAST of FC930049 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CYSK_CITLA1.479e-8990.56Cysteine synthase OS=Citrullus lanatus PE=2 SV=1[more]
CYSK_SPIOL2.361e-8788.20Cysteine synthase OS=Spinacia oleracea PE=1 SV=1[more]
CYSK_SOLTU1.692e-8585.39Cysteine synthase OS=Solanum tuberosum PE=2 SV=1[more]
CYSK1_ORYSJ6.429e-8585.39Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]
CYSK1_ARATH1.097e-8484.44Cysteine synthase OS=Arabidopsis thaliana GN=OASA1... [more]
CYSK_WHEAT1.432e-8485.39Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=... [more]
CYSK1_BRAJU3.190e-8483.89Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]
CYSK2_BRAJU3.527e-8383.15Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]
CYSK_MAIZE1.340e-8284.83Cysteine synthase OS=Zea mays PE=1 SV=2[more]
CYSK2_ORYSJ3.900e-8283.15Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]

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Properties
Property NameValue
Genbank descriptionC34003C03EF PostHarvC1 Citrus clementina cDNA clone C34003C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930049 ID=FC930049; Name=FC930049; organism=Citrus clementina; type=EST; length=682bp
GAATTATTATCAGGAGATTTAGTTGTTTTTCAATTTTCTACTGTTTTCCA
GCTGCCTTGACATTGTTTACGATTCTTCCCAGAGAAAGCTTTCACGTTCG
CTTGTAACTTGAAAAAAAGAAAAAAAAATGGTGGAGGAGAAGTCCGTGAT
TGCGAAAGATGTCACTGAATTGATTGGTAAAACACCATTGGTGTATCTCA
ACCGCATTGTGGATGGTTGCGTTGCTAGAATTGCTGCCAAGCTGGAGATG
ATGGAACCCTGCTCTAGCGTCAAAGATAGAATTGGATACAGTATGATCGC
TGATGCAGAGGAGAAGGGTCTCATTAGACCAGGCGAGAGTGTCCTGATTG
AGCCTACCAGCGGTAATACTGGTATAGGGTTGGCATTCATGGCAGCTGCT
AAGGGTTACAGACTTATAATTACCATGCCTGCTTCAATGAGTCTTGAAAG
AAGAATGGTTCTCCTAGCTTTTGGAGCTGAGCTTGTGCTCACTGATCCTG
CCAGGGGCATGAAGGGAGCTGTTCAGAAGGCAGAAGAGATAAGGGACAAG
ACACCGAATTCCTATGTCCTTCAGCAGTTTGAAAACCCAGCAAACCCAAA
GATCCACTACGAGACTACCGGACCAGAGATCTGGAAAGGCACCGGTGGTA
AGATTGATGCCCTTGTTTCTGGTATAGGGACT
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