FC930055

Overview
NameFC930055
Unique NameFC930055
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930055_ssr483 microsatellite FC930055_ssr483:483..494. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15075 contig Ccv1_Contig15075:17..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930055 vs. ExPASy Swiss-Prot
Match: VA727_ARATH (Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 1.873e-82
Identity = 150/180 (83.33%), Postives = 162/180 (90.00%), Query Frame = 1
Query:  166 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAXITEVKGIMMDNIEKVLDRGERIEL 705
            M+QKGLIYSFV+KGTVVLAEHT YSGNFSTIA+QCLQKLP +SSKYTYSCDGHTFNFL+D+GFVFLVVADES GRSVPFVFLERVK+DFK+RY ASI+N+E HPLA           RFS+AYNLDREFGP LKEHMQYCMSHPEEMSKLSKLKA ITEVKGIMMDNIEKVLDRGE+IEL
Sbjct:    1 MSQKGLIYSFVAKGTVVLAEHTPYSGNFSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLVDNGFVFLVVADESTGRSVPFVFLERVKEDFKKRYEASIKNDERHPLADEDEDDDLFGDRFSVAYNLDREFGPILKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKIEL 180          
BLAST of FC930055 vs. ExPASy Swiss-Prot
Match: VA725_ARATH (Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 2.306e-56
Identity = 104/186 (55.91%), Postives = 138/186 (74.19%), Query Frame = 1
Query:  148 LRNWKEMNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAXITEVKGIMMDNIEKVLDRGERIEL 705
            LR  + M Q+ LIYSFV++GTV+L E+T + GNF+ +A QCLQKLP+S++K+TY+CDGHTFN+L+++GF + VVA ESVGR +P  FLERVK+DF +RYG                           A +L+REFG +LKEHMQYC+ HP+E+SKL+K+KA +TEVKG+MM+NIEKVLDRGE+IEL
Sbjct:   60 LRVTRTMGQQNLIYSFVARGTVILVEYTEFKGNFTAVAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVESVGRQIPMAFLERVKEDFNKRYGGGKATTAQ-------------------ANSLNREFGSKLKEHMQYCVDHPDEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIEL 226          
BLAST of FC930055 vs. ExPASy Swiss-Prot
Match: VA726_ARATH (Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 6.710e-56
Identity = 103/180 (57.22%), Postives = 134/180 (74.44%), Query Frame = 1
Query:  166 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAXITEVKGIMMDNIEKVLDRGERIEL 705
            M Q+ LIYSFV++GTV+LAE+T + GNF+++A QCLQKLP+S++K+TY+CDGHTFN+L D+GF + VV  ES GR +P  FLERVK+DF +RYG    +                      A +L++EFG +LKEHMQYC  HPEE+SKLSK+KA +TEVKG+MM+NIEKVLDRGE+IEL
Sbjct:    1 MGQQSLIYSFVARGTVILAEYTEFKGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLADNGFTYCVVVIESAGRQIPMAFLERVKEDFNKRYGGGKASTAK-------------------ANSLNKEFGSKLKEHMQYCADHPEEISKLSKVKAQVTEVKGVMMENIEKVLDRGEKIEL 161          
BLAST of FC930055 vs. ExPASy Swiss-Prot
Match: VA722_ARATH (Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 3.682e-54
Identity = 100/180 (55.56%), Postives = 135/180 (75.00%), Query Frame = 1
Query:  166 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAXITEVKGIMMDNIEKVLDRGERIEL 705
            M Q+ LIYSFV++GTV+L E T + GNF++IA QCLQKLP+S++K+TY+CDGHTFN+L+++GF + VVA +S GR +P  FLERVK+DF +RYG                         + A +L++EFG +LKEHMQYCM HP+E+SKL+K+KA ++EVKG+MM+NIEKVLDRGE+IEL
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVDSAGRQIPMAFLERVKEDFNKRYGGG-------------------KAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIEL 161          
BLAST of FC930055 vs. ExPASy Swiss-Prot
Match: VA721_ARATH (Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 8.202e-54
Identity = 100/180 (55.56%), Postives = 134/180 (74.44%), Query Frame = 1
Query:  166 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAXITEVKGIMMDNIEKVLDRGERIEL 705
            M Q+ LIYSFV++GTV+L E T + GNF++IA QCLQKLP+S++K+TY+CDGHTFN+L++ GF + VVA +S GR +P  FLERVK+DF +RYG                         + A +L++EFG +LKEHMQYCM HP+E+SKL+K+KA ++EVKG+MM+NIEKVLDRGE+IEL
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVEDGFTYCVVAVDSAGRQIPMSFLERVKEDFNKRYGGG-------------------KAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIEL 161          
BLAST of FC930055 vs. ExPASy Swiss-Prot
Match: VA723_ARATH (Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.402e-45
Identity = 88/180 (48.89%), Postives = 123/180 (68.33%), Query Frame = 1
Query:  166 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAXITEVKGIMMDNIEKVLDRGERIEL 705
            M Q+ L YSF+++GTV+L E T + GNF+++A Q L+ LP+S++K+TY+CDGHTFN L+++GF + VVA +S GR +P  FLERVK+DF +RYG      +                    A +L++EFG  LKEHMQYCM HP+E+S L+K KA ++EVK +MM+NIEKVL RG   E+
Sbjct:    1 MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQ-------------------ANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEM 161          
BLAST of FC930055 vs. ExPASy Swiss-Prot
Match: VA724_ARATH (Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 5.329e-45
Identity = 88/179 (49.16%), Postives = 125/179 (69.83%), Query Frame = 1
Query:  166 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASS-SKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAXITEVKGIMMDNIEKVLDRGERI 699
            M Q+  IYSFV++GT++LAE+T ++GNF +IA QCLQKLP+SS SK+TY+CD HTFNFL++ G+ + VVA +S+ + +   FLERVK DFK+RYG    +                    +IA +L++EFGP +KEHM Y + H EE+ KL K+KA ++EVK IM++NI+K +DRGE +
Sbjct:    1 MGQESFIYSFVARGTMILAEYTEFTGNFPSIAAQCLQKLPSSSNSKFTYNCDHHTFNFLVEDGYAYCVVAKDSLSKQISIAFLERVKADFKKRYGGGKAST-------------------AIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENL 160          
BLAST of FC930055 vs. ExPASy Swiss-Prot
Match: VA711_ARATH (Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.040e-24
Identity = 61/176 (34.66%), Postives = 102/176 (57.95%), Query Frame = 1
Query:  181 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASS-SKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAXITEVKGIMMDNIEKVLDRGERIEL 705
            ++Y+ V++GTVVL+E T+ S N STIA Q L+K+P  + S  +YS D + F+     G   L +A+E+ GR +PF FLE +   F + YG ++                      ++AY ++ EF   L + + Y  + P    +++++K  + +V+G+M++NI+KVLDRGER+EL
Sbjct:    3 ILYALVARGTVVLSEFTATSTNASTIAKQILEKVPGDNDSNVSYSQDRYVFHVKRTDGLTVLCMAEETAGRRIPFAFLEDIHQRFVRTYGRAVHT--------------------ALAYAMNEEFSRVLSQQIDYYSNDPNA-DRINRIKGEMNQVRGVMIENIDKVLDRGERLEL 157          
BLAST of FC930055 vs. ExPASy Swiss-Prot
Match: VA713_ARATH (Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.509e-23
Identity = 61/177 (34.46%), Postives = 105/177 (59.32%), Query Frame = 1
Query:  181 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPA--SSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAXITEVKGIMMDNIEKVLDRGERIEL 705
            +I++ V++GTVVL+E ++ S N S+I+ Q L+KLP   S S  +YS D + F+     G   L +ADE+ GR++PF FL+ +   F + YG +I + +                    AY+++ EF   L + M++  + P    ++S++K  +++V+ +M++NI+KVLDRGER+EL
Sbjct:    3 IIFALVARGTVVLSEFSATSTNASSISKQILEKLPGNDSDSHMSYSQDRYIFHVKRTDGLTVLCMADETAGRNIPFAFLDDIHQRFVKTYGRAIHSAQ--------------------AYSMNDEFSRVLSQQMEFYSNDP-NADRMSRIKGEMSQVRNVMIENIDKVLDRGERLEL 158          
BLAST of FC930055 vs. ExPASy Swiss-Prot
Match: VA712_ARATH (Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana GN=VAMP712 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.668e-22
Identity = 60/176 (34.09%), Postives = 99/176 (56.25%), Query Frame = 1
Query:  181 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKY-TYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAXITEVKGIMMDNIEKVLDRGERIEL 705
            ++Y+ V++GTVVLAE ++ S N STIA Q L+K+P +   + +YS D + F+     G   L +ADE  GR +PF FLE +   F + YG +I + +                    AY ++ EF   L + ++Y  + P     +S++K  + +V+ +M++NI+ +LDRGER+EL
Sbjct:    3 ILYALVARGTVVLAELSTTSTNASTIAKQILEKIPGNGDSHVSYSQDRYVFHVKRTDGLTVLCMADEDAGRRIPFSFLEDIHQRFVRTYGRAIHSAQ--------------------AYAMNDEFSRVLNQQIEYYSNDP-NADTISRIKGEMNQVRDVMIENIDNILDRGERLEL 157          
The following BLAST results are available for this feature:
BLAST of FC930055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
VA727_ARATH1.873e-8283.33Vesicle-associated membrane protein 727 OS=Arabido... [more]
VA725_ARATH2.306e-5655.91Vesicle-associated membrane protein 725 OS=Arabido... [more]
VA726_ARATH6.710e-5657.22Putative vesicle-associated membrane protein 726 O... [more]
VA722_ARATH3.682e-5455.56Vesicle-associated membrane protein 722 OS=Arabido... [more]
VA721_ARATH8.202e-5455.56Vesicle-associated membrane protein 721 OS=Arabido... [more]
VA723_ARATH1.402e-4548.89Vesicle-associated membrane protein 723 OS=Arabido... [more]
VA724_ARATH5.329e-4549.16Vesicle-associated membrane protein 724 OS=Arabido... [more]
VA711_ARATH3.040e-2434.66Vesicle-associated membrane protein 711 OS=Arabido... [more]
VA713_ARATH1.509e-2334.46Vesicle-associated membrane protein 713 OS=Arabido... [more]
VA712_ARATH1.668e-2234.09Vesicle-associated membrane protein 712 OS=Arabido... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34003C09EF PostHarvC1 Citrus clementina cDNA clone C34003C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930055 ID=FC930055; Name=FC930055; organism=Citrus clementina; type=EST; length=706bp
GAAAATAAAAAAAGNCACACAAGACGTTTAAACAGTTAACCCCCGCGGAG
TCTTCGACTTCAACTCTAAGCAAACAATCAACCGTCTCCAGATTCTCTCT
CTTTGTTCCTCGATTCGAAATTCATCCGGCGGCTTTCTTTTCCGGAATTG
AGAAATTGGAAAGAAATGAATCAGAAAGGGTTGATTTACAGCTTTGTTTC
GAAAGGCACTGTCGTTTTAGCCGAGCACACGTCGTATTCCGGAAATTTCA
GTACCATTGCCATTCAATGTTTACAGAAATTGCCTGCGAGTAGTAGCAAG
TACACGTATTCATGCGATGGCCACACTTTTAACTTCCTCCTCGACTCTGG
ATTCGTATTTCTGGTTGTTGCTGATGAATCGGTTGGGAGAAGTGTGCCGT
TTGTTTTTCTCGAACGAGTCAAGGATGATTTTAAACAGCGGTATGGGGCG
AGTATTCAGAATGAGGAATCACACCCCCTTGCTGATGATGATGAGGATGA
TGATTTGTTTGAAGATCGATTTAGCATTGCCTATAATCTTGACAGAGAAT
TTGGGCCAAGGCTTAAGGAGCACATGCAGTATTGTATGAGCCACCCTGAG
GAGATGAGCAAGCTTTCCAAATTAAAGGCTNCAATAACTGAGGTCAAGGG
GATTATGATGGACAATATTGAGAAGGTTTTGGATCGTGGGGAGAGGATTG
AGCTAC
back to top