FC930056

Overview
NameFC930056
Unique NameFC930056
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930056 vs. ExPASy Swiss-Prot
Match: SFRS1_ARATH (Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.805e-58
Identity = 100/153 (65.36%), Postives = 109/153 (71.24%), Query Frame = 1 
Query:   64 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG---------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD 495
            MSSRSSRT+YVGNLPGD R REVEDLF KYGP+V IDLK+PPRPPGYAF+EF+D RDAEDAI GRDGY+FDG+RLRVELAHG         G                            VLVTGLPSSASWQDLKDHMR+ GDVCFSQV+RD
Sbjct:    1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRD 153

HSP 2 Score: 50.8322 bits (120), Expect = 1.805e-58
Identity = 21/29 (72.41%), Postives = 26/29 (89.66%), Query Frame = 2 
Query:  608 GMTGIVDYTSYDDMKYAIRKLDRSEFRNA 694
            G TG+VDYT Y+DMKYA++KLD +EFRNA
Sbjct:  156 GTTGVVDYTCYEDMKYALKKLDDTEFRNA 184
[Close]
BLAST of FC930056 vs. ExPASy Swiss-Prot
Match: SFR1B_DANRE (Splicing factor, arginine/serine-rich 1B OS=Danio rerio GN=sfrs1b PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.472e-38
Identity = 74/138 (53.62%), Postives = 87/138 (63.04%), Query Frame = 1 
Query:   88 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD 495
            +YVGNLP D R ++VED+FYKYG I DIDLK     P +AF+EFED RDAEDA+ GRDGY++DGYRLRVE    G                              V+V+GLP S SWQDLKDHMR AGDVC++ VFRD
Sbjct:   17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRD 154

HSP 2 Score: 35.4242 bits (80), Expect = 5.472e-38
Identity = 13/26 (50.00%), Postives = 21/26 (80.77%), Query Frame = 2 
Query:  614 TGIVDYTSYDDMKYAIRKLDRSEFRN 691
            TG+V++   +DM YA+RKLD ++FR+
Sbjct:  156 TGVVEFVRKEDMTYAVRKLDNTKFRS 181
[Close]
BLAST of FC930056 vs. ExPASy Swiss-Prot
Match: SFRS1_CHICK (Splicing factor, arginine/serine-rich 1 OS=Gallus gallus GN=SFRS1 PE=1 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 7.123e-38
Identity = 73/138 (52.90%), Postives = 87/138 (63.04%), Query Frame = 1 
Query:   88 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD 495
            +YVGNLP D R +++ED+FYKYG I DIDLK     P +AF+EFED RDAEDA+ GRDGY++DGYRLRVE    G                              V+V+GLP S SWQDLKDHMR AGDVC++ VFRD
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRD 155

HSP 2 Score: 35.4242 bits (80), Expect = 7.123e-38
Identity = 13/26 (50.00%), Postives = 21/26 (80.77%), Query Frame = 2 
Query:  614 TGIVDYTSYDDMKYAIRKLDRSEFRN 691
            TG+V++   +DM YA+RKLD ++FR+
Sbjct:  157 TGVVEFVRKEDMTYAVRKLDNTKFRS 182
[Close]
BLAST of FC930056 vs. ExPASy Swiss-Prot
Match: SFRS1_PONAB (Splicing factor, arginine/serine-rich 1 OS=Pongo abelii GN=SFRS1 PE=2 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 7.127e-38
Identity = 72/138 (52.17%), Postives = 87/138 (63.04%), Query Frame = 1 
Query:   88 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD 495
            +YVGNLP D R +++ED+FYKYG I DIDLK     P +AF+EFED RDAEDA+ GRDGY++DGYRLRVE    G                              V+V+GLP S SWQDLKDHMR AGDVC++ V+RD
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD 155

HSP 2 Score: 36.965 bits (84), Expect = 7.127e-38
Identity = 15/31 (48.39%), Postives = 23/31 (74.19%), Query Frame = 2 
Query:  599 VYIGMTGIVDYTSYDDMKYAIRKLDRSEFRN 691
            VY   TG+V++   +DM YA+RKLD ++FR+
Sbjct:  152 VYRDGTGVVEFVRKEDMTYAVRKLDNTKFRS 182
[Close]
BLAST of FC930056 vs. ExPASy Swiss-Prot
Match: SFRS1_PIG (Splicing factor, arginine/serine-rich 1 OS=Sus scrofa GN=SFRS1 PE=2 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 7.127e-38
Identity = 72/138 (52.17%), Postives = 87/138 (63.04%), Query Frame = 1 
Query:   88 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD 495
            +YVGNLP D R +++ED+FYKYG I DIDLK     P +AF+EFED RDAEDA+ GRDGY++DGYRLRVE    G                              V+V+GLP S SWQDLKDHMR AGDVC++ V+RD
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD 155

HSP 2 Score: 36.965 bits (84), Expect = 7.127e-38
Identity = 15/31 (48.39%), Postives = 23/31 (74.19%), Query Frame = 2 
Query:  599 VYIGMTGIVDYTSYDDMKYAIRKLDRSEFRN 691
            VY   TG+V++   +DM YA+RKLD ++FR+
Sbjct:  152 VYRDGTGVVEFVRKEDMTYAVRKLDNTKFRS 182
[Close]
BLAST of FC930056 vs. ExPASy Swiss-Prot
Match: SFRS1_MOUSE (Splicing factor, arginine/serine-rich 1 OS=Mus musculus GN=Sfrs1 PE=1 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 7.127e-38
Identity = 72/138 (52.17%), Postives = 87/138 (63.04%), Query Frame = 1 
Query:   88 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD 495
            +YVGNLP D R +++ED+FYKYG I DIDLK     P +AF+EFED RDAEDA+ GRDGY++DGYRLRVE    G                              V+V+GLP S SWQDLKDHMR AGDVC++ V+RD
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD 155

HSP 2 Score: 36.965 bits (84), Expect = 7.127e-38
Identity = 15/31 (48.39%), Postives = 23/31 (74.19%), Query Frame = 2 
Query:  599 VYIGMTGIVDYTSYDDMKYAIRKLDRSEFRN 691
            VY   TG+V++   +DM YA+RKLD ++FR+
Sbjct:  152 VYRDGTGVVEFVRKEDMTYAVRKLDNTKFRS 182
[Close]
BLAST of FC930056 vs. ExPASy Swiss-Prot
Match: SFRS1_HUMAN (Splicing factor, arginine/serine-rich 1 OS=Homo sapiens GN=SFRS1 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 7.127e-38
Identity = 72/138 (52.17%), Postives = 87/138 (63.04%), Query Frame = 1 
Query:   88 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD 495
            +YVGNLP D R +++ED+FYKYG I DIDLK     P +AF+EFED RDAEDA+ GRDGY++DGYRLRVE    G                              V+V+GLP S SWQDLKDHMR AGDVC++ V+RD
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD 155

HSP 2 Score: 36.965 bits (84), Expect = 7.127e-38
Identity = 15/31 (48.39%), Postives = 23/31 (74.19%), Query Frame = 2 
Query:  599 VYIGMTGIVDYTSYDDMKYAIRKLDRSEFRN 691
            VY   TG+V++   +DM YA+RKLD ++FR+
Sbjct:  152 VYRDGTGVVEFVRKEDMTYAVRKLDNTKFRS 182
[Close]
BLAST of FC930056 vs. ExPASy Swiss-Prot
Match: SFRS1_BOVIN (Splicing factor, arginine/serine-rich 1 OS=Bos taurus GN=SFRS1 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 7.127e-38
Identity = 72/138 (52.17%), Postives = 87/138 (63.04%), Query Frame = 1 
Query:   88 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD 495
            +YVGNLP D R +++ED+FYKYG I DIDLK     P +AF+EFED RDAEDA+ GRDGY++DGYRLRVE    G                              V+V+GLP S SWQDLKDHMR AGDVC++ V+RD
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD 155

HSP 2 Score: 36.965 bits (84), Expect = 7.127e-38
Identity = 15/31 (48.39%), Postives = 23/31 (74.19%), Query Frame = 2 
Query:  599 VYIGMTGIVDYTSYDDMKYAIRKLDRSEFRN 691
            VY   TG+V++   +DM YA+RKLD ++FR+
Sbjct:  152 VYRDGTGVVEFVRKEDMTYAVRKLDNTKFRS 182
[Close]
BLAST of FC930056 vs. ExPASy Swiss-Prot
Match: SFR1A_DANRE (Splicing factor, arginine/serine-rich 1A OS=Danio rerio GN=sfrs1a PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 7.698e-37
Identity = 74/148 (50.00%), Postives = 87/148 (58.78%), Query Frame = 1 
Query:   88 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH------------GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD 495
            +YVGNLP D R ++VED+FYKYG I DIDLK     P +AF+EFED RDAEDA+  RDGY++DGYRLRVE               GG                            V+V+GLP S SWQDLKDHMR AGDVC++ VFRD
Sbjct:   17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGYDYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRD 164

HSP 2 Score: 35.4242 bits (80), Expect = 7.698e-37
Identity = 13/26 (50.00%), Postives = 21/26 (80.77%), Query Frame = 2 
Query:  614 TGIVDYTSYDDMKYAIRKLDRSEFRN 691
            TG+V++   +DM YA+RKLD ++FR+
Sbjct:  166 TGVVEFVRKEDMTYAVRKLDNTKFRS 191
[Close]
BLAST of FC930056 vs. ExPASy Swiss-Prot
Match: SFRS1_XENTR (Splicing factor, arginine/serine-rich 1 OS=Xenopus tropicalis GN=sfrs1 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.886e-36
Identity = 74/157 (47.13%), Postives = 88/157 (56.05%), Query Frame = 1 
Query:   88 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH---------------------GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD 495
            +YVGNLP D R +++ED+FYKYG I DIDLK     P +AF+EFED RDAEDA+ GRDGY++DGYRLRVE                        GG                            V+V+GLP S SWQDLKDHMR AGDVC++ VFRD
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCYADVFRD 174

HSP 2 Score: 35.4242 bits (80), Expect = 2.886e-36
Identity = 13/26 (50.00%), Postives = 21/26 (80.77%), Query Frame = 2 
Query:  614 TGIVDYTSYDDMKYAIRKLDRSEFRN 691
            TG+V++   +DM YA+RKLD ++FR+
Sbjct:  176 TGVVEFVRKEDMTYAVRKLDNTKFRS 201
The following BLAST results are available for this feature:
BLAST of FC930056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
SFRS1_ARATH1.805e-5865.36Pre-mRNA-splicing factor SF2 OS=Arabidopsis thalia... [more]
SFR1B_DANRE5.472e-3853.62Splicing factor, arginine/serine-rich 1B OS=Danio ... [more]
SFRS1_CHICK7.123e-3852.90Splicing factor, arginine/serine-rich 1 OS=Gallus ... [more]
SFRS1_PONAB7.127e-3852.17Splicing factor, arginine/serine-rich 1 OS=Pongo a... [more]
SFRS1_PIG7.127e-3852.17Splicing factor, arginine/serine-rich 1 OS=Sus scr... [more]
SFRS1_MOUSE7.127e-3852.17Splicing factor, arginine/serine-rich 1 OS=Mus mus... [more]
SFRS1_HUMAN7.127e-3852.17Splicing factor, arginine/serine-rich 1 OS=Homo sa... [more]
SFRS1_BOVIN7.127e-3852.17Splicing factor, arginine/serine-rich 1 OS=Bos tau... [more]
SFR1A_DANRE7.698e-3750.00Splicing factor, arginine/serine-rich 1A OS=Danio ... [more]
SFRS1_XENTR2.886e-3647.13Splicing factor, arginine/serine-rich 1 OS=Xenopus... [more]

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Properties
Property NameValue
Genbank descriptionC34003C10EF PostHarvC1 Citrus clementina cDNA clone C34003C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930056 ID=FC930056; Name=FC930056; organism=Citrus clementina; type=EST; length=696bp
GCCGGAATTTACGACCGAGATTTCCACCTCTGAAATTCTAATTTCCGATC
AGAAAAAACAAAAATGAGCAGCCGATCGAGCCGTACTCTTTATGTCGGAA
ACCTCCCGGGGGATACGAGAATGAGGGAAGTGGAAGACTTGTTCTACAAG
TATGGGCCTATTGTTGATATTGACTTGAAGATCCCACCAAGACCTCCGGG
TTACGCCTTTCTTGAGTTTGAGGACTATCGGGACGCTGAGGATGCAATTC
GTGGTCGAGATGGCTATAACTTTGATGGGTATCGATTGCGAGTTGAACTA
GCACATGGGGGTCGAAGACATTCGTCGTCAATGGATCGTTATAGCAGTTA
CAGCAGTGGAGGTAGCCGTGGAGTCTCCAGGCGCTCTGACTATCGTGTTT
TGGTGACTGGATTACCTTCATCTGCTTCATGGCAAGACCTCAAGGATCAC
ATGCGTCGTGCTGGGGATGTCTGTTTTTCTCAAGTGTTTCGCGATCGTGG
CGAACTACATTGGCGGATGCTTCGGTTTTGGGGAGGAGAAGTCAATTGGG
GAGAGATTCGAGAAGCAGGAAGGATCCTCGGTGGTGGAATGTTTAGCTGT
TTATATAGGTATGACGGGAATTGTGGATTACACTAGCTATGATGATATGA
AATATGCTATAAGGAAACTTGATCGCTCGGAGTTCCGGAATGCGTT
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