FC930058
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930058 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 4.946e-36 Identity = 90/216 (41.67%), Postives = 125/216 (57.87%), Query Frame = 3 Query: 3 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTPPGTK 650 S Q++DTS HF++FVGDLSPE+T + + F+ + SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+ A + TN ++ N +P+N TVY G +A +T + + F G I E+RV +KG+ FVR+STH AA AI N T + G +KC WG K +P TK Sbjct: 104 SSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR---------KPPAPKSTQETNTKQLRFEDVVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTT---IEGHVVKCYWG-KESPDMTK 300
BLAST of FC930058 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 4.946e-36 Identity = 89/216 (41.20%), Postives = 127/216 (58.80%), Query Frame = 3 Query: 3 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTPPGTK 650 S Q++DTS HF++FVGDLSPE+T + + F+ + SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+ + Q ++ K + ++ N +P+N TVY G +A +T + + F G I E+RV +KG+ FVR+STH AA AI N T + G +KC WG K +P TK Sbjct: 87 SSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQL---------RFEDVVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTT---IEGHVVKCYWG-KESPDMTK 283
BLAST of FC930058 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3) HSP 1 Score: 140.584 bits (353), Expect = 8.730e-33 Identity = 87/220 (39.55%), Postives = 122/220 (55.45%), Query Frame = 3 Query: 3 SGQREDTSG-----------HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 629 S Q++DTS HF++FVGDLSPE+T + A F+ + SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+ + S+ K + S D E N +P N TVY G + +T+ + + F G I E+RV DKG+ FVR+++H AA AI N T + G +KC WG + Sbjct: 85 SSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQL-------SYD--EVVNQSSPSN----CTVYCGGVTSGLTEQLMRQTFSPFGQ--IMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTT---IEGHVVKCYWGKE 286 HSP 2 Score: 83.1889 bits (204), Expect = 1.654e-15 Identity = 54/205 (26.34%), Postives = 101/205 (49.27%), Query Frame = 3 Query: 39 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEVRVQRDKGFGFVRYSTHAEAALAI-QMGNTTQSSYLFGKQMKCSWGSKPTP 638 ++VG+LS +VT+A + FS C + +++ D T + + FV F + A +A+ + G+ + ++++ NWAT + +D SS S + + + V+VG+L+PE+T D+ F G A V++++ + KG+GFV + +A AI QMG +L G+Q++ +W ++ P Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVST--------------------QRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG----GQWLGGRQIRTNWATRKPP 187
BLAST of FC930058 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.489e-32 Identity = 83/220 (37.73%), Postives = 121/220 (55.00%), Query Frame = 3 Query: 3 SGQREDTSG-----------HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 629 S Q++DTS HF++FVGDLSPE+T + A F+ + SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+ + S+ K + + + +++P TVY G + +T+ + + F G I E+RV DKG+ FVR+S+H AA AI N T + G +KC WG + Sbjct: 85 SSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQL-------------SYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQ--IMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTT---IEGHVVKCYWGKE 286 HSP 2 Score: 83.1889 bits (204), Expect = 1.654e-15 Identity = 54/205 (26.34%), Postives = 101/205 (49.27%), Query Frame = 3 Query: 39 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEVRVQRDKGFGFVRYSTHAEAALAI-QMGNTTQSSYLFGKQMKCSWGSKPTP 638 ++VG+LS +VT+A + FS C + +++ D T + + FV F + A +A+ + G+ + ++++ NWAT + +D SS S + + + V+VG+L+PE+T D+ F G A V++++ + KG+GFV + +A AI QMG +L G+Q++ +W ++ P Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVST--------------------QRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG----GQWLGGRQIRTNWATRKPP 187
BLAST of FC930058 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.308e-20 Identity = 67/203 (33.00%), Postives = 106/203 (52.22%), Query Frame = 3 Query: 33 FNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTP 638 F+IFVGDL P D+ LF F S+YPSC+ A+++ D TG SR +GFV F ++++ Q A+ + G R +R + A+ + + S A S + + S+ + N + +P TTV+VG LA +++ DL F G I +++ KG GFV+YS + A AI NT Q + + ++ +WG P Sbjct: 182 FSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASP-----KSRASIAADSALGIVPTSTSN--RQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGR--ILNIKIPFGKGCGFVQYSEKSAAEKAI---NTMQGALVGTSHIRLAWGHNTLP 372
BLAST of FC930058 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 9.371e-19 Identity = 75/228 (32.89%), Postives = 116/228 (50.88%), Query Frame = 3 Query: 36 NIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG-----AGNNEDKQSSD------------AKSVVELTNGSSEDGKETTN--------TEAPENN----PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRY--STHAEAALAIQMGNTTQSSYLFGKQMKCSWG 623 +IFVGDL+P VT++ LF F + Y S S A+++ DQ TG S+G+GFV F N + Q A++++ G +L R I+ T G +GNN+ +SS +K L+NG++ G + + + P N P TTV++G L+ VT+ +L +F G I V++ K GFV+Y AEAA+A G +S +++ SWG Sbjct: 164 SIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKVG-PTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGNNNMGFKRNHMSQFIYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPF--GTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANS-----RVRLSWG 383
BLAST of FC930058 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3) HSP 1 Score: 92.8189 bits (229), Expect = 2.088e-18 Identity = 44/94 (46.81%), Postives = 59/94 (62.77%), Query Frame = 3 Query: 9 QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 290 Q+ + FN+FVGDL+ V D TL F +PS VMWD +TG SRG+GFVSF +Q DAQ+A++ + G+ L R +R NWA K NN + Sbjct: 154 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNNN 247
BLAST of FC930058 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2) HSP 1 Score: 92.0485 bits (227), Expect = 3.561e-18 Identity = 67/208 (32.21%), Postives = 105/208 (50.48%), Query Frame = 3 Query: 24 SGHFNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSED-GKETTNTEAPE-NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTP 638 + ++IFVGDLSP V + +++ F S Y SC A++M D +T SRG+GFV F ++ D +SA+ ++ G+ G R IR AT K + S V + S G + P+ + +TV+VG L+ V++ +L F + G I V++ KG GFV++ A +AI N Q L +++ SWG P Sbjct: 183 ASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLAT-------PKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGE--IVYVKIPPGKGCGFVQFVNRQSAEIAI---NQLQGYPLGNSRIRLSWGRNQNP 378
BLAST of FC930058 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 1.767e-17 Identity = 69/255 (27.06%), Postives = 108/255 (42.35%), Query Frame = 3 Query: 33 FNIFVGDLSPEVTDATLFACFSV-YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT-------------------KGAGNNEDKQSSDAKSVVELTNGSSEDGKE-----------------------TTNTEAPEN----NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTPPGTKFN 656 F++FVGDLSP T+A L + F + S RVM D TG SR FGFV F ++ + + A+ +++GKW R +R +AT + D++ ++ +++ N ++ N P N +P TTV+VG L P+ T+ L F G I VR+ K GFV++ +A +IQ Q + G ++ SWG +P+ K N Sbjct: 192 FSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYATPRNNMMLQLQEQQQQQQQLQQQHQQLDQEDNNGPLLIKTANNLIQNNSNMLPLNALHNAPPMHLNEGGISNMRVNDSLPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGP--ILNVRIPNGKNCGFVKFEKRIDAEASIQ---GLQGFIVGGSPIRLSWG-RPSSSNAKTN 440
BLAST of FC930058 vs. ExPASy Swiss-Prot
Match: RBM42_XENTR (RNA-binding protein 42 OS=Xenopus tropicalis GN=rbm42 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.236e-12 Identity = 35/76 (46.05%), Postives = 51/76 (67.11%), Query Frame = 3 Query: 24 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 251 S F IF GDL EV D L FS YPS A+V+ D++TG+++G+GFVSF++ D A+ ++ GK++GSR I+ Sbjct: 290 SDDFRIFCGDLGNEVNDDILARAFSRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGKYVGSRPIK 365 The following BLAST results are available for this feature:
BLAST of FC930058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 35
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930058 ID=FC930058; Name=FC930058; organism=Citrus clementina; type=EST; length=746bpback to top |