FC930058

Overview
NameFC930058
Unique NameFC930058
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length746
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7008 contig Ccv1_Contig7008:81..826. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930058 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.946e-36
Identity = 90/216 (41.67%), Postives = 125/216 (57.87%), Query Frame = 3
Query:    3 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTPPGTK 650
            S Q++DTS HF++FVGDLSPE+T   + + F+ +   SDARV+ D  TG+S+G+GFVSF N+ DA++AI  + G+WLG RQIR NWAT+            A    + TN      ++  N  +P+N     TVY G +A  +T   + + F   G   I E+RV  +KG+ FVR+STH  AA AI   N T    + G  +KC WG K +P  TK
Sbjct:  104 SSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR---------KPPAPKSTQETNTKQLRFEDVVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTT---IEGHVVKCYWG-KESPDMTK 300          
BLAST of FC930058 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.946e-36
Identity = 89/216 (41.20%), Postives = 127/216 (58.80%), Query Frame = 3
Query:    3 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTPPGTK 650
            S Q++DTS HF++FVGDLSPE+T   + + F+ +   SDARV+ D  TG+S+G+GFVSF N+ DA++AI  + G+WLG RQIR NWAT+     +  Q ++ K +           ++  N  +P+N     TVY G +A  +T   + + F   G   I E+RV  +KG+ FVR+STH  AA AI   N T    + G  +KC WG K +P  TK
Sbjct:   87 SSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQL---------RFEDVVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTT---IEGHVVKCYWG-KESPDMTK 283          
BLAST of FC930058 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 8.730e-33
Identity = 87/220 (39.55%), Postives = 122/220 (55.45%), Query Frame = 3
Query:    3 SGQREDTSG-----------HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 629
            S Q++DTS            HF++FVGDLSPE+T   + A F+ +   SDARV+ D  TG+S+G+GFVSF N+ DA++AI  + G+WLG RQIR NWAT+     +    S+ K +       S D  E  N  +P N     TVY G +   +T+  + + F   G   I E+RV  DKG+ FVR+++H  AA AI   N T    + G  +KC WG +
Sbjct:   85 SSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQL-------SYD--EVVNQSSPSN----CTVYCGGVTSGLTEQLMRQTFSPFGQ--IMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTT---IEGHVVKCYWGKE 286          

HSP 2 Score: 83.1889 bits (204), Expect = 1.654e-15
Identity = 54/205 (26.34%), Postives = 101/205 (49.27%), Query Frame = 3
Query:   39 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEVRVQRDKGFGFVRYSTHAEAALAI-QMGNTTQSSYLFGKQMKCSWGSKPTP 638
            ++VG+LS +VT+A +   FS    C + +++ D  T  +  + FV F   + A +A+  + G+ +  ++++ NWAT  +   +D  SS   S                     + +  +  V+VG+L+PE+T  D+   F   G    A V++++   + KG+GFV +    +A  AI QMG      +L G+Q++ +W ++  P
Sbjct:    9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVST--------------------QRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG----GQWLGGRQIRTNWATRKPP 187          
BLAST of FC930058 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.489e-32
Identity = 83/220 (37.73%), Postives = 121/220 (55.00%), Query Frame = 3
Query:    3 SGQREDTSG-----------HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 629
            S Q++DTS            HF++FVGDLSPE+T   + A F+ +   SDARV+ D  TG+S+G+GFVSF N+ DA++AI  + G+WLG RQIR NWAT+     +    S+ K +             + +    +++P   TVY G +   +T+  + + F   G   I E+RV  DKG+ FVR+S+H  AA AI   N T    + G  +KC WG +
Sbjct:   85 SSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQL-------------SYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQ--IMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTT---IEGHVVKCYWGKE 286          

HSP 2 Score: 83.1889 bits (204), Expect = 1.654e-15
Identity = 54/205 (26.34%), Postives = 101/205 (49.27%), Query Frame = 3
Query:   39 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEVRVQRDKGFGFVRYSTHAEAALAI-QMGNTTQSSYLFGKQMKCSWGSKPTP 638
            ++VG+LS +VT+A +   FS    C + +++ D  T  +  + FV F   + A +A+  + G+ +  ++++ NWAT  +   +D  SS   S                     + +  +  V+VG+L+PE+T  D+   F   G    A V++++   + KG+GFV +    +A  AI QMG      +L G+Q++ +W ++  P
Sbjct:    9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVST--------------------QRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG----GQWLGGRQIRTNWATRKPP 187          
BLAST of FC930058 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.308e-20
Identity = 67/203 (33.00%), Postives = 106/203 (52.22%), Query Frame = 3
Query:   33 FNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTP 638
            F+IFVGDL P   D+ LF  F S+YPSC+ A+++ D  TG SR +GFV F ++++ Q A+  + G     R +R + A+      + + S  A S + +   S+ +     N +    +P  TTV+VG LA  +++ DL   F   G   I  +++   KG GFV+YS  + A  AI   NT Q + +    ++ +WG    P
Sbjct:  182 FSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASP-----KSRASIAADSALGIVPTSTSN--RQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGR--ILNIKIPFGKGCGFVQYSEKSAAEKAI---NTMQGALVGTSHIRLAWGHNTLP 372          
BLAST of FC930058 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 9.371e-19
Identity = 75/228 (32.89%), Postives = 116/228 (50.88%), Query Frame = 3
Query:   36 NIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG-----AGNNEDKQSSD------------AKSVVELTNGSSEDGKETTN--------TEAPENN----PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRY--STHAEAALAIQMGNTTQSSYLFGKQMKCSWG 623
            +IFVGDL+P VT++ LF  F + Y S S A+++ DQ TG S+G+GFV F N  + Q A++++ G +L  R I+    T G     +GNN+  +SS             +K    L+NG++  G +  +         + P  N    P  TTV++G L+  VT+ +L  +F     G I  V++   K  GFV+Y     AEAA+A   G    +S     +++ SWG
Sbjct:  164 SIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKVG-PTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGNNNMGFKRNHMSQFIYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPF--GTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANS-----RVRLSWG 383          
BLAST of FC930058 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 2.088e-18
Identity = 44/94 (46.81%), Postives = 59/94 (62.77%), Query Frame = 3
Query:    9 QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 290
            Q+  +   FN+FVGDL+  V D TL   F  +PS     VMWD +TG SRG+GFVSF +Q DAQ+A++ + G+ L  R +R NWA K   NN +
Sbjct:  154 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNNN 247          
BLAST of FC930058 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.561e-18
Identity = 67/208 (32.21%), Postives = 105/208 (50.48%), Query Frame = 3
Query:   24 SGHFNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSED-GKETTNTEAPE-NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTP 638
            +  ++IFVGDLSP V +  +++ F S Y SC  A++M D +T  SRG+GFV F ++ D +SA+ ++ G+  G R IR   AT        K  +   S V +   S    G  +     P+  +   +TV+VG L+  V++ +L   F + G   I  V++   KG GFV++     A +AI   N  Q   L   +++ SWG    P
Sbjct:  183 ASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLAT-------PKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGE--IVYVKIPPGKGCGFVQFVNRQSAEIAI---NQLQGYPLGNSRIRLSWGRNQNP 378          
BLAST of FC930058 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.767e-17
Identity = 69/255 (27.06%), Postives = 108/255 (42.35%), Query Frame = 3
Query:   33 FNIFVGDLSPEVTDATLFACFSV-YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT-------------------KGAGNNEDKQSSDAKSVVELTNGSSEDGKE-----------------------TTNTEAPEN----NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTPPGTKFN 656
            F++FVGDLSP  T+A L + F   + S    RVM D  TG SR FGFV F ++ + + A+ +++GKW   R +R  +AT                   +      D++ ++   +++  N   ++                            N   P N    +P  TTV+VG L P+ T+  L   F   G   I  VR+   K  GFV++    +A  +IQ     Q   + G  ++ SWG +P+    K N
Sbjct:  192 FSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYATPRNNMMLQLQEQQQQQQQLQQQHQQLDQEDNNGPLLIKTANNLIQNNSNMLPLNALHNAPPMHLNEGGISNMRVNDSLPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGP--ILNVRIPNGKNCGFVKFEKRIDAEASIQ---GLQGFIVGGSPIRLSWG-RPSSSNAKTN 440          
BLAST of FC930058 vs. ExPASy Swiss-Prot
Match: RBM42_XENTR (RNA-binding protein 42 OS=Xenopus tropicalis GN=rbm42 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.236e-12
Identity = 35/76 (46.05%), Postives = 51/76 (67.11%), Query Frame = 3
Query:   24 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 251
            S  F IF GDL  EV D  L   FS YPS   A+V+ D++TG+++G+GFVSF++  D   A+ ++ GK++GSR I+
Sbjct:  290 SDDFRIFCGDLGNEVNDDILARAFSRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGKYVGSRPIK 365          
The following BLAST results are available for this feature:
BLAST of FC930058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
TIAR_MOUSE4.946e-3641.67Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=... [more]
TIAR_HUMAN4.946e-3641.20Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=... [more]
TIA1_HUMAN8.730e-3339.55Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=T... [more]
TIA1_MOUSE1.489e-3237.73Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=... [more]
CSX1_SCHPO1.308e-2033.00RNA-binding post-transcriptional regulator csx1 OS... [more]
NAM8_YEAST9.371e-1932.89Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 P... [more]
PUB1_YEAST2.088e-1846.81Nuclear and cytoplasmic polyadenylated RNA-binding... [more]
YG41_SCHPO3.561e-1832.21Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
NGR1_YEAST1.767e-1727.06Negative growth regulatory protein NGR1 OS=Sacchar... [more]
RBM42_XENTR2.236e-1246.05RNA-binding protein 42 OS=Xenopus tropicalis GN=rb... [more]

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Properties
Property NameValue
Genbank descriptionC34003C12EF PostHarvC1 Citrus clementina cDNA clone C34003C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930058 ID=FC930058; Name=FC930058; organism=Citrus clementina; type=EST; length=746bp
CCAGTGGTCAGAGGGAAGATACATCAGGTCATTTTAACATTTTTGTTGGT
GACCTGAGCCCAGAAGTTACTGATGCTACGTTGTTTGCGTGCTTTTCTGT
TTATCCCAGTTGTTCGGATGCAAGAGTTATGTGGGATCAGAAGACTGGGC
GTTCTAGAGGCTTTGGCTTTGTTTCTTTCCGGAACCAGCAGGATGCCCAA
AGTGCGATAAACGATCTAACTGGAAAGTGGCTAGGCAGTAGACAGATACG
TTGTAACTGGGCAACAAAAGGTGCTGGAAACAATGAGGACAAACAGAGCT
CTGATGCTAAAAGTGTGGTAGAACTAACAAATGGCTCTTCAGAAGATGGT
AAAGAGACCACAAATACTGAGGCCCCTGAGAACAATCCCCAATATACTAC
AGTTTATGTGGGCAATCTGGCTCCGGAGGTCACTCAGCTCGATCTCCATC
GCCACTTCCATTCTCTTGGTGCTGGAGTGATTGAAGAGGTCCGAGTCCAG
CGAGATAAAGGCTTTGGTTTTGTTAGATACAGTACTCATGCTGAGGCAGC
TCTGGCTATTCAGATGGGCAATACCACCCAGTCATCATATCTCTTTGGCA
AGCAGATGAAGTGTTCTTGGGGCAGCAAGCCCACCCCGCCAGGGACAAAG
TTCAATCCACTTCCCCCACCTGCAGCTGCACCTATACCGGGCCTTTCAGC
TGCTGACCTTTTAGCCTATGAGCGACAAATAGCAATGAGCAAGATG
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