FC930059
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930059 vs. ExPASy Swiss-Prot
Match: REXO4_XENLA (RNA exonuclease 4 OS=Xenopus laevis GN=rexo4 PE=2 SV=2) HSP 1 Score: 145.206 bits (365), Expect = 3.055e-34 Identity = 73/134 (54.48%), Postives = 99/134 (73.88%), Query Frame = 3 Query: 297 LTDVVAMDCEMVGISQ-GNKSALGRVSLVNKWGNLIYDEFVRPVERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF---LKNGRX*ALRHLAAEIL 686 LT VAMDCEMVG+ G +S L RVS+VN +G +YD++V+P ERV D+RT +SGIRP D++K + F VQK+V+E++ GR LVGHA+HNDLK L L H KK +RDT +Y+PF +K+GR +L+ L +IL Sbjct: 231 LTRTVAMDCEMVGVGMDGEESILARVSIVNLFGKCVYDKYVKPTERVTDYRTAVSGIRPEDVKKGEPFKVVQKEVSEILRGRTLVGHAVHNDLKILFLDHPKKAIRDTQKYKPFKQKVKSGRP-SLKLLCEKIL 363
BLAST of FC930059 vs. ExPASy Swiss-Prot
Match: REXO4_HUMAN (RNA exonuclease 4 OS=Homo sapiens GN=REXO4 PE=1 SV=2) HSP 1 Score: 145.206 bits (365), Expect = 3.055e-34 Identity = 75/152 (49.34%), Postives = 108/152 (71.05%), Query Frame = 3 Query: 243 ESDGSKPSPLTPINDDFSLTDVVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPVERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF---LKNGRX*ALRHLAAEIL 686 +S+GS L LT +A+DCEMVG+ +G +S RVS+VN++G +YD++V+P E V D+RT +SGIRP +L++ ++ VQK+VAE+++GRILVGHALHNDLK L L H KK +RDT +Y+PF +K+GR +LR L+ +IL Sbjct: 222 QSEGSVSLSLVKEQAFGGLTRALALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENLKQGEELEVVQKEVAEMLKGRILVGHALHNDLKVLFLDHPKKKIRDTQKYKPFKSQVKSGRP-SLRLLSEKIL 372
BLAST of FC930059 vs. ExPASy Swiss-Prot
Match: REXO4_MOUSE (RNA exonuclease 4 OS=Mus musculus GN=Rexo4 PE=2 SV=2) HSP 1 Score: 143.28 bits (360), Expect = 1.161e-33 Identity = 69/134 (51.49%), Postives = 103/134 (76.87%), Query Frame = 3 Query: 297 LTDVVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPVERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF---LKNGRX*ALRHLAAEIL 686 LT +A+DCEMVG+ +G +S RVS+VN++G +YD++V+P E V D+RT +SGIRP +L++ ++F V+K+VAE+++GRILVGHALHNDLK L L H KK +RDT +++PF +K+GR +L+ L+ +IL Sbjct: 250 LTKALALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENLKQGEEFEVVKKEVAEMLKGRILVGHALHNDLKVLFLDHPKKKIRDTQKFKPFRSRVKSGRP-SLKRLSEKIL 382
BLAST of FC930059 vs. ExPASy Swiss-Prot
Match: REXO4_XENTR (RNA exonuclease 4 OS=Xenopus tropicalis GN=rexo4 PE=2 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 2.586e-33 Identity = 73/134 (54.48%), Postives = 97/134 (72.39%), Query Frame = 3 Query: 297 LTDVVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPVERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF---LKNGRX*ALRHLAAEIL 686 LT VAMDCEMVG+ G +S L RVS+VN +G +YD++VRP ERV D+RT +SGIRP D++ + F VQ +VAE++ GR LVGHA+HNDLK L L H KK +RDT +Y+PF +K+GR +L+ L +IL Sbjct: 225 LTRTVAMDCEMVGVGLDGEESMLARVSIVNLFGKCVYDKYVRPTERVTDYRTAVSGIRPDDIKNGEAFKDVQAEVAEILRGRTLVGHAVHNDLKILFLDHPKKAIRDTQKYKPFKEKVKSGRP-SLKLLCEKIL 357
BLAST of FC930059 vs. ExPASy Swiss-Prot
Match: REXO4_ASPFU (RNA exonuclease 4 OS=Aspergillus fumigatus GN=rex4 PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 9.826e-33 Identity = 93/241 (38.59%), Postives = 124/241 (51.45%), Query Frame = 3 Query: 108 LNPNWAQLQLKVKSNGLNKSSKHTKNPESETHNSILGKRK-----------------ERLEAESDGSKPSPL-----------------------TPINDDFSLT----DVVAMDCEMVGISQG--NKSALGRVSLVNKWGNLIYDEFVRPVERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPFLK--NGRX*ALRHLAAEIL 686 L+ NW +LQ +K + SSK K + ET N K+K E E D S P+ T +N+ S T VAMDCEMVG+ N SAL RVS+VN G +YD +VRP E + D+RT +SGI P+ + +A+ VQK VAE+++GRILVGHA+ NDL ALLL H K+D+RDTS++ P+ K G L+ LA+E L Sbjct: 6 LSSNWKKLQETLKKQSASSSSKKRKTSDRETQNVTTKKQKIETIERKKSSLKKKRMSEGQEHGGDESAQEPMVKTISHKSSTATISEQSRTESKPTKVNEGRSPTAEIGKYVAMDCEMVGVGPNPDNDSALARVSIVNFNGEQVYDSYVRPKEMITDWRTHVSGISPKHMAEARSLEQVQKDVAEILDGRILVGHAVSNDLDALLLGHPKRDIRDTSKHPPYRKIAGGGSPRLKILASEFL 246
BLAST of FC930059 vs. ExPASy Swiss-Prot
Match: REXO4_YEAST (RNA exonuclease 4 OS=Saccharomyces cerevisiae GN=REX4 PE=1 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.676e-30 Identity = 66/130 (50.77%), Postives = 96/130 (73.85%), Query Frame = 3 Query: 309 VAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPVERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPFLK---NGRX*ALRHLAAEIL 686 +AMDCE VG+ +G +SAL R+S+VN +G+++ DEFV+P E+VV++RT +SGI+P ++ A F QKK A+++EGRILVGHAL +DL+AL+L+H K LRDTS + PF K G+ +L+ L E+L Sbjct: 122 IAMDCEFVGVGPEGKESALARISIVNYFGHVVLDEFVKPREKVVEWRTWVSGIKPEHMKNAITFKEAQKKTADILEGRILVGHALKHDLEALMLSHPKSLLRDTSRHLPFRKLYAKGKTPSLKKLTREVL 251
BLAST of FC930059 vs. ExPASy Swiss-Prot
Match: REXO4_DEBHA (RNA exonuclease 4 OS=Debaryomyces hansenii GN=REX4 PE=3 SV=2) HSP 1 Score: 132.109 bits (331), Expect = 2.676e-30 Identity = 84/230 (36.52%), Postives = 131/230 (56.96%), Query Frame = 3 Query: 108 LNPNWAQLQLKVKSNGLNKSSKHTKNPESETHNSILGKRKERLEAESDGS---KPSPLTPIN-------DDFSLTDV------------------------VAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPVERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF--LKNGRX*ALRHLAAEIL 686 L+ NW +L K LN+ SK TK P + K+ E LE + + + S L+PI +D +++D+ +AMDCE VG+ +G +SAL RVS+VN +G+ ++D+FV+P ERV D+RT +SG+ P+ + +A F Q + ++L+EGRILVGHA+H+DL AL L+H K +RDTS+Y+PF + G+ +L+ L++ L Sbjct: 5 LSSNWKKLSSK-----LNQGSKVTKQPVKGKNGKTKIKKAE-LENTLNITPTLQKSTLSPIELALWTKENDINVSDIAVQTEKITLIPQGNDIRKKEPGKYLAMDCEFVGVGPEGTESALARVSIVNFYGHTVFDKFVKPRERVTDWRTWVSGVTPKHMNEAISFQEAQNETSKLLEGRILVGHAIHHDLDALFLSHPKSRIRDTSQYKPFRSISMGKTPSLKKLSSHFL 228
BLAST of FC930059 vs. ExPASy Swiss-Prot
Match: REXO4_USTMA (RNA exonuclease 4 OS=Ustilago maydis GN=REX4 PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 7.786e-30 Identity = 68/129 (52.71%), Postives = 95/129 (73.64%), Query Frame = 3 Query: 309 VAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPVERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF--LKNGRX*ALRHLAAEIL 686 +A+DCEMVG+ +G++S L RVS+VN G IYD+FVRP E+V D+RT +SG+RP+DL+ A F VQ +VA LI+G++LVGHA+ NDLKALLL+H K +RDT+ +QP L + +L+ LA +L Sbjct: 136 LAIDCEMVGVGDKGSESILARVSIVNFHGATIYDQFVRPQEKVTDYRTWVSGVRPKDLKGAPSFSQVQGEVANLIKGKVLVGHAIQNDLKALLLSHPKVLIRDTATFQPLRDLAKTKYPSLKKLAKLVL 264
BLAST of FC930059 vs. ExPASy Swiss-Prot
Match: REXO4_SCHPO (RNA exonuclease 4 OS=Schizosaccharomyces pombe GN=rex4 PE=2 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.734e-29 Identity = 81/217 (37.33%), Postives = 122/217 (56.22%), Query Frame = 3 Query: 117 NWAQLQLKV----------KSNGLNKSSKHTKNPESETHNSILGKRK-----ERLEAESD----------GSKPSPLTPINDDFSLTDVVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPVERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF--LKNGRX*ALRHLAAEIL 686 NW +L+ K+ K + K K K +E NS + +K ++ E+D G S LT + +L +AMDCEMVG++ + S L RVS+VN G+++YD +VRP E+V D+RT +SG++ +R A F VQ +VA++++ R+LVGHA+HNDLK LLL+H ++ +RDTS + + L GR L+ LA IL Sbjct: 5 NWEKLKKKLDSAKSGRVEKKHSNEKKYLKSVKGKNNENENSYIVDKKRMNELKKFAKENDIPESQVLDAYGVDASKLTRKTNLETLGKYIAMDCEMVGVAD-DMSVLARVSIVNYHGHVVYDTYVRPKEKVTDWRTWVSGVKSFHMRDAPSFEKVQAEVAKILDNRVLVGHAVHNDLKVLLLSHPRRMIRDTSRFSGYRKLAKGRTPGLKKLAEVIL 220
BLAST of FC930059 vs. ExPASy Swiss-Prot
Match: REXO4_GIBZE (RNA exonuclease 4 OS=Gibberella zeae GN=REX4 PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.468e-28 Identity = 84/228 (36.84%), Postives = 132/228 (57.89%), Query Frame = 3 Query: 30 AHTAPTKTEKKMGS------EETKKHPKTHLQLNPNWAQLQLKVKSNGLNKSSKHTKNPESETHNSILGKRKERLEAESDGSKPSPLTPINDDFSLTDVVAMDCEMVGISQG-NKSALGRVSLVNKWGNLIYDEFVRPVERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPFLK--NGRX*ALRHLAAEIL 686 A +A T +KKMG EET T L L WA+ V + L ++ N ++ ++ +L K+++ + + + +A+DCEMVG+ G ++SAL RVS+V+ G IYD +V+P E+V ++RT +SGI + +R A+DF VQ ++ +L+ GRILVGH L +DL+AL+L+H KD+RDT+++ F K NGR +LR LA ++L Sbjct: 54 AKSAQTSDKKKMGGVHSSKIEETAPGTSTSLAL---WAE-DHDVSAEALAEAY----NLGAKDNSMMLAAAKDKINHG-----------LTEGIEIGKYIAIDCEMVGVGPGGHESALARVSIVDFHGVQIYDSYVKPKEKVTNWRTAVSGISQKSMRFARDFEEVQAEIDKLLRGRILVGHDLKHDLEALILSHPGKDIRDTAKFSGFKKYANGRKPSLRVLAQQLL 262 The following BLAST results are available for this feature:
BLAST of FC930059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 35
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930059 ID=FC930059; Name=FC930059; organism=Citrus clementina; type=EST; length=687bpback to top |