FC930059

Overview
NameFC930059
Unique NameFC930059
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930059 vs. ExPASy Swiss-Prot
Match: REXO4_XENLA (RNA exonuclease 4 OS=Xenopus laevis GN=rexo4 PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.055e-34
Identity = 73/134 (54.48%), Postives = 99/134 (73.88%), Query Frame = 3
Query:  297 LTDVVAMDCEMVGISQ-GNKSALGRVSLVNKWGNLIYDEFVRPVERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF---LKNGRX*ALRHLAAEIL 686
            LT  VAMDCEMVG+   G +S L RVS+VN +G  +YD++V+P ERV D+RT +SGIRP D++K + F  VQK+V+E++ GR LVGHA+HNDLK L L H KK +RDT +Y+PF   +K+GR  +L+ L  +IL
Sbjct:  231 LTRTVAMDCEMVGVGMDGEESILARVSIVNLFGKCVYDKYVKPTERVTDYRTAVSGIRPEDVKKGEPFKVVQKEVSEILRGRTLVGHAVHNDLKILFLDHPKKAIRDTQKYKPFKQKVKSGRP-SLKLLCEKIL 363          
BLAST of FC930059 vs. ExPASy Swiss-Prot
Match: REXO4_HUMAN (RNA exonuclease 4 OS=Homo sapiens GN=REXO4 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.055e-34
Identity = 75/152 (49.34%), Postives = 108/152 (71.05%), Query Frame = 3
Query:  243 ESDGSKPSPLTPINDDFSLTDVVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPVERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF---LKNGRX*ALRHLAAEIL 686
            +S+GS    L        LT  +A+DCEMVG+  +G +S   RVS+VN++G  +YD++V+P E V D+RT +SGIRP +L++ ++   VQK+VAE+++GRILVGHALHNDLK L L H KK +RDT +Y+PF   +K+GR  +LR L+ +IL
Sbjct:  222 QSEGSVSLSLVKEQAFGGLTRALALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENLKQGEELEVVQKEVAEMLKGRILVGHALHNDLKVLFLDHPKKKIRDTQKYKPFKSQVKSGRP-SLRLLSEKIL 372          
BLAST of FC930059 vs. ExPASy Swiss-Prot
Match: REXO4_MOUSE (RNA exonuclease 4 OS=Mus musculus GN=Rexo4 PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.161e-33
Identity = 69/134 (51.49%), Postives = 103/134 (76.87%), Query Frame = 3
Query:  297 LTDVVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPVERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF---LKNGRX*ALRHLAAEIL 686
            LT  +A+DCEMVG+  +G +S   RVS+VN++G  +YD++V+P E V D+RT +SGIRP +L++ ++F  V+K+VAE+++GRILVGHALHNDLK L L H KK +RDT +++PF   +K+GR  +L+ L+ +IL
Sbjct:  250 LTKALALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENLKQGEEFEVVKKEVAEMLKGRILVGHALHNDLKVLFLDHPKKKIRDTQKFKPFRSRVKSGRP-SLKRLSEKIL 382          
BLAST of FC930059 vs. ExPASy Swiss-Prot
Match: REXO4_XENTR (RNA exonuclease 4 OS=Xenopus tropicalis GN=rexo4 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.586e-33
Identity = 73/134 (54.48%), Postives = 97/134 (72.39%), Query Frame = 3
Query:  297 LTDVVAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPVERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF---LKNGRX*ALRHLAAEIL 686
            LT  VAMDCEMVG+   G +S L RVS+VN +G  +YD++VRP ERV D+RT +SGIRP D++  + F  VQ +VAE++ GR LVGHA+HNDLK L L H KK +RDT +Y+PF   +K+GR  +L+ L  +IL
Sbjct:  225 LTRTVAMDCEMVGVGLDGEESMLARVSIVNLFGKCVYDKYVRPTERVTDYRTAVSGIRPDDIKNGEAFKDVQAEVAEILRGRTLVGHAVHNDLKILFLDHPKKAIRDTQKYKPFKEKVKSGRP-SLKLLCEKIL 357          
BLAST of FC930059 vs. ExPASy Swiss-Prot
Match: REXO4_ASPFU (RNA exonuclease 4 OS=Aspergillus fumigatus GN=rex4 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.826e-33
Identity = 93/241 (38.59%), Postives = 124/241 (51.45%), Query Frame = 3
Query:  108 LNPNWAQLQLKVKSNGLNKSSKHTKNPESETHNSILGKRK-----------------ERLEAESDGSKPSPL-----------------------TPINDDFSLT----DVVAMDCEMVGISQG--NKSALGRVSLVNKWGNLIYDEFVRPVERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPFLK--NGRX*ALRHLAAEIL 686
            L+ NW +LQ  +K    + SSK  K  + ET N    K+K                 E  E   D S   P+                       T +N+  S T      VAMDCEMVG+     N SAL RVS+VN  G  +YD +VRP E + D+RT +SGI P+ + +A+    VQK VAE+++GRILVGHA+ NDL ALLL H K+D+RDTS++ P+ K   G    L+ LA+E L
Sbjct:    6 LSSNWKKLQETLKKQSASSSSKKRKTSDRETQNVTTKKQKIETIERKKSSLKKKRMSEGQEHGGDESAQEPMVKTISHKSSTATISEQSRTESKPTKVNEGRSPTAEIGKYVAMDCEMVGVGPNPDNDSALARVSIVNFNGEQVYDSYVRPKEMITDWRTHVSGISPKHMAEARSLEQVQKDVAEILDGRILVGHAVSNDLDALLLGHPKRDIRDTSKHPPYRKIAGGGSPRLKILASEFL 246          
BLAST of FC930059 vs. ExPASy Swiss-Prot
Match: REXO4_YEAST (RNA exonuclease 4 OS=Saccharomyces cerevisiae GN=REX4 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.676e-30
Identity = 66/130 (50.77%), Postives = 96/130 (73.85%), Query Frame = 3
Query:  309 VAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPVERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPFLK---NGRX*ALRHLAAEIL 686
            +AMDCE VG+  +G +SAL R+S+VN +G+++ DEFV+P E+VV++RT +SGI+P  ++ A  F   QKK A+++EGRILVGHAL +DL+AL+L+H K  LRDTS + PF K    G+  +L+ L  E+L
Sbjct:  122 IAMDCEFVGVGPEGKESALARISIVNYFGHVVLDEFVKPREKVVEWRTWVSGIKPEHMKNAITFKEAQKKTADILEGRILVGHALKHDLEALMLSHPKSLLRDTSRHLPFRKLYAKGKTPSLKKLTREVL 251          
BLAST of FC930059 vs. ExPASy Swiss-Prot
Match: REXO4_DEBHA (RNA exonuclease 4 OS=Debaryomyces hansenii GN=REX4 PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.676e-30
Identity = 84/230 (36.52%), Postives = 131/230 (56.96%), Query Frame = 3
Query:  108 LNPNWAQLQLKVKSNGLNKSSKHTKNPESETHNSILGKRKERLEAESDGS---KPSPLTPIN-------DDFSLTDV------------------------VAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPVERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF--LKNGRX*ALRHLAAEIL 686
            L+ NW +L  K     LN+ SK TK P    +     K+ E LE   + +   + S L+PI        +D +++D+                        +AMDCE VG+  +G +SAL RVS+VN +G+ ++D+FV+P ERV D+RT +SG+ P+ + +A  F   Q + ++L+EGRILVGHA+H+DL AL L+H K  +RDTS+Y+PF  +  G+  +L+ L++  L
Sbjct:    5 LSSNWKKLSSK-----LNQGSKVTKQPVKGKNGKTKIKKAE-LENTLNITPTLQKSTLSPIELALWTKENDINVSDIAVQTEKITLIPQGNDIRKKEPGKYLAMDCEFVGVGPEGTESALARVSIVNFYGHTVFDKFVKPRERVTDWRTWVSGVTPKHMNEAISFQEAQNETSKLLEGRILVGHAIHHDLDALFLSHPKSRIRDTSQYKPFRSISMGKTPSLKKLSSHFL 228          
BLAST of FC930059 vs. ExPASy Swiss-Prot
Match: REXO4_USTMA (RNA exonuclease 4 OS=Ustilago maydis GN=REX4 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.786e-30
Identity = 68/129 (52.71%), Postives = 95/129 (73.64%), Query Frame = 3
Query:  309 VAMDCEMVGIS-QGNKSALGRVSLVNKWGNLIYDEFVRPVERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF--LKNGRX*ALRHLAAEIL 686
            +A+DCEMVG+  +G++S L RVS+VN  G  IYD+FVRP E+V D+RT +SG+RP+DL+ A  F  VQ +VA LI+G++LVGHA+ NDLKALLL+H K  +RDT+ +QP   L   +  +L+ LA  +L
Sbjct:  136 LAIDCEMVGVGDKGSESILARVSIVNFHGATIYDQFVRPQEKVTDYRTWVSGVRPKDLKGAPSFSQVQGEVANLIKGKVLVGHAIQNDLKALLLSHPKVLIRDTATFQPLRDLAKTKYPSLKKLAKLVL 264          
BLAST of FC930059 vs. ExPASy Swiss-Prot
Match: REXO4_SCHPO (RNA exonuclease 4 OS=Schizosaccharomyces pombe GN=rex4 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.734e-29
Identity = 81/217 (37.33%), Postives = 122/217 (56.22%), Query Frame = 3
Query:  117 NWAQLQLKV----------KSNGLNKSSKHTKNPESETHNSILGKRK-----ERLEAESD----------GSKPSPLTPINDDFSLTDVVAMDCEMVGISQGNKSALGRVSLVNKWGNLIYDEFVRPVERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPF--LKNGRX*ALRHLAAEIL 686
            NW +L+ K+          K +   K  K  K   +E  NS +  +K     ++   E+D          G   S LT   +  +L   +AMDCEMVG++  + S L RVS+VN  G+++YD +VRP E+V D+RT +SG++   +R A  F  VQ +VA++++ R+LVGHA+HNDLK LLL+H ++ +RDTS +  +  L  GR   L+ LA  IL
Sbjct:    5 NWEKLKKKLDSAKSGRVEKKHSNEKKYLKSVKGKNNENENSYIVDKKRMNELKKFAKENDIPESQVLDAYGVDASKLTRKTNLETLGKYIAMDCEMVGVAD-DMSVLARVSIVNYHGHVVYDTYVRPKEKVTDWRTWVSGVKSFHMRDAPSFEKVQAEVAKILDNRVLVGHAVHNDLKVLLLSHPRRMIRDTSRFSGYRKLAKGRTPGLKKLAEVIL 220          
BLAST of FC930059 vs. ExPASy Swiss-Prot
Match: REXO4_GIBZE (RNA exonuclease 4 OS=Gibberella zeae GN=REX4 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.468e-28
Identity = 84/228 (36.84%), Postives = 132/228 (57.89%), Query Frame = 3
Query:   30 AHTAPTKTEKKMGS------EETKKHPKTHLQLNPNWAQLQLKVKSNGLNKSSKHTKNPESETHNSILGKRKERLEAESDGSKPSPLTPINDDFSLTDVVAMDCEMVGISQG-NKSALGRVSLVNKWGNLIYDEFVRPVERVVDFRTRISGIRPRDLRKAKDFPTVQKKVAELIEGRILVGHALHNDLKALLLTHSKKDLRDTSEYQPFLK--NGRX*ALRHLAAEIL 686
            A +A T  +KKMG       EET     T L L   WA+    V +  L ++     N  ++ ++ +L   K+++              + +   +   +A+DCEMVG+  G ++SAL RVS+V+  G  IYD +V+P E+V ++RT +SGI  + +R A+DF  VQ ++ +L+ GRILVGH L +DL+AL+L+H  KD+RDT+++  F K  NGR  +LR LA ++L
Sbjct:   54 AKSAQTSDKKKMGGVHSSKIEETAPGTSTSLAL---WAE-DHDVSAEALAEAY----NLGAKDNSMMLAAAKDKINHG-----------LTEGIEIGKYIAIDCEMVGVGPGGHESALARVSIVDFHGVQIYDSYVKPKEKVTNWRTAVSGISQKSMRFARDFEEVQAEIDKLLRGRILVGHDLKHDLEALILSHPGKDIRDTAKFSGFKKYANGRKPSLRVLAQQLL 262          
The following BLAST results are available for this feature:
BLAST of FC930059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
REXO4_XENLA3.055e-3454.48RNA exonuclease 4 OS=Xenopus laevis GN=rexo4 PE=2 ... [more]
REXO4_HUMAN3.055e-3449.34RNA exonuclease 4 OS=Homo sapiens GN=REXO4 PE=1 SV... [more]
REXO4_MOUSE1.161e-3351.49RNA exonuclease 4 OS=Mus musculus GN=Rexo4 PE=2 SV... [more]
REXO4_XENTR2.586e-3354.48RNA exonuclease 4 OS=Xenopus tropicalis GN=rexo4 P... [more]
REXO4_ASPFU9.826e-3338.59RNA exonuclease 4 OS=Aspergillus fumigatus GN=rex4... [more]
REXO4_YEAST2.676e-3050.77RNA exonuclease 4 OS=Saccharomyces cerevisiae GN=R... [more]
REXO4_DEBHA2.676e-3036.52RNA exonuclease 4 OS=Debaryomyces hansenii GN=REX4... [more]
REXO4_USTMA7.786e-3052.71RNA exonuclease 4 OS=Ustilago maydis GN=REX4 PE=3 ... [more]
REXO4_SCHPO1.734e-2937.33RNA exonuclease 4 OS=Schizosaccharomyces pombe GN=... [more]
REXO4_GIBZE1.468e-2836.84RNA exonuclease 4 OS=Gibberella zeae GN=REX4 PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionC34003D01EF PostHarvC1 Citrus clementina cDNA clone C34003D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930059 ID=FC930059; Name=FC930059; organism=Citrus clementina; type=EST; length=687bp
GGCTGAAACGATGTCACTTCGGTTCTCGTGCTCATACGGCGCCAACGAAG
ACTGAGAAGAAGATGGGGAGTGAAGAGACGAAGAAACACCCTAAAACCCA
TTTACAACTCAATCCCAACTGGGCTCAACTTCAACTAAAGGTGAAAAGCA
ATGGCCTTAACAAGTCTTCAAAGCACACAAAAAACCCAGAATCGGAAACC
CATAACTCGATATTGGGAAAGCGAAAAGAGAGGCTTGAGGCAGAGTCTGA
TGGTTCTAAACCTAGTCCTTTGACACCAATAAATGATGATTTCAGTTTGA
CAGATGTGGTAGCTATGGATTGTGAGATGGTTGGCATCAGTCAGGGAAAT
AAAAGTGCTCTTGGAAGAGTTTCACTGGTAAATAAGTGGGGAAATCTGAT
ATATGATGAGTTTGTGCGCCCAGTGGAACGTGTTGTTGACTTCCGTACAA
GAATAAGCGGTATTCGACCCAGAGACCTGAGGAAAGCAAAAGATTTCCCA
ACAGTTCAGAAGAAAGTGGCAGAGTTGATTGAAGGAAGGATTCTTGTTGG
CCATGCCTTGCACAATGATCTTAAGGCATTACTTCTAACACATTCAAAGA
AGGACTTGCGAGATACCTCAGAGTATCAACCATTCTTAAAGAATGGCCGT
NAGTAGGCGCTTCGGCATCTTGCAGCAGAAATTCTTG
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