FC930062

Overview
NameFC930062
Unique NameFC930062
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15096 contig Ccv1_Contig15096:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930062 vs. ExPASy Swiss-Prot
Match: XTHB_PHAAN (Probable xyloglucan endotransglucosylase/hydrolase protein B OS=Phaseolus angularis GN=XTHB PE=2 SV=1)

HSP 1 Score: 399.823 bits (1026), Expect = 7.299e-111
Identity = 184/221 (83.26%), Postives = 204/221 (92.31%), Query Frame = 1
Query:   28 MASKIWILLLGILFMVSATMGVPPRKPVNVPFGRNYMPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGSVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKACHFYSVLWNMYQIVFFVDDIPIRVFKNCKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYK 690
            MAS + IL L ++ + S+ +   PR+PV+VPFGRNY+PTWAFDHIKYFNGGSEIQLHLDKYTGTGFQ+KGSYLFGHFSM +K+VPGDSAG+VTAF LSSQN+EHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKA H YSVLWNMYQIVF VD+IPIRVFKN K+LGV+FPFNQPMK+Y+SLWNADDWATRGGLEKTDWSKAPF+A YK
Sbjct:    1 MASSLLILCLVLVSLASSALCAAPRRPVDVPFGRNYIPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQTKGSYLFGHFSMNIKMVPGDSAGTVTAFCLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHRYSVLWNMYQIVFLVDNIPIRVFKNLKELGVKFPFNQPMKVYNSLWNADDWATRGGLEKTDWSKAPFVAEYK 221          
BLAST of FC930062 vs. ExPASy Swiss-Prot
Match: XTHA_PHAAN (Xyloglucan endotransglucosylase/hydrolase protein A OS=Phaseolus angularis GN=XTHA PE=1 SV=1)

HSP 1 Score: 397.512 bits (1020), Expect = 3.623e-110
Identity = 185/221 (83.71%), Postives = 199/221 (90.05%), Query Frame = 1
Query:   28 MASKIWILLLGILFMVSATMGVPPRKPVNVPFGRNYMPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGSVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKACHFYSVLWNMYQIVFFVDDIPIRVFKNCKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYK 690
            M S +W  L+ +L + SA+    PR P++VPFGRNY+PTWAFDHIKY NGGSEIQLHLDKYTGTGFQSKGSYLFGHFSM +KLVPGDSAG+VTAFYLSS N+EHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPT   H YSVLWNMYQIVF+VDD PIRVFKN  DLGV+FPFNQPMKIY+SLWNADDWATRGGLEKTDWSKAPFIASYK
Sbjct:    1 MGSSLWTCLI-LLSLASASFAANPRTPIDVPFGRNYVPTWAFDHIKYLNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMYIKLVPGDSAGTVTAFYLSSTNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTTQYHRYSVLWNMYQIVFYVDDYPIRVFKNSNDLGVKFPFNQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIASYK 220          
BLAST of FC930062 vs. ExPASy Swiss-Prot
Match: XTH_SOYBN (Probable xyloglucan endotransglucosylase/hydrolase (Fragment) OS=Glycine max GN=XTH PE=2 SV=1)

HSP 1 Score: 395.201 bits (1014), Expect = 1.798e-109
Identity = 179/217 (82.49%), Postives = 201/217 (92.63%), Query Frame = 1
Query:   40 IWILLLGILFMVSATMGVPPRKPVNVPFGRNYMPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGSVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKACHFYSVLWNMYQIVFFVDDIPIRVFKNCKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYK 690
            +W + + +  + SA +   PR+PV+V FGRNY+PTWAFDHIKYFNGGS+IQLHLDKYTGTGFQSKGSYLFGHFSM +K+VPGDSAG+VTAFYLSSQN+EHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTK  H YS+LWN+YQIVFFVD++PIRVFKN KDLGV+FPF+QPMKIY+SLWNADDWATRGGLEKTDWSKAPFIA+YK
Sbjct:    6 VWTVCVILASLASAALCANPRRPVDVQFGRNYVPTWAFDHIKYFNGGSDIQLHLDKYTGTGFQSKGSYLFGHFSMYIKMVPGDSAGTVTAFYLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEYHRYSILWNLYQIVFFVDEVPIRVFKNSKDLGVKFPFDQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIAAYK 222          
BLAST of FC930062 vs. ExPASy Swiss-Prot
Match: XTH5_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1)

HSP 1 Score: 384.03 bits (985), Expect = 4.145e-106
Identity = 176/214 (82.24%), Postives = 192/214 (89.72%), Query Frame = 1
Query:   49 LLLGILFMVSATMGVPPRKPVNVPFGRNYMPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGSVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKACHFYSVLWNMYQIVFFVDDIPIRVFKNCKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYK 690
            L L  L + +   GVPP+K +NVPFGRNY PTWAFDHIKY NGGSE+ L LDKYTGTGFQSKGSYLFGHFSM +K+V GDSAG+VTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGG G+REQRI LWFDP+K  H YSVLWNMYQIVFFVDD+PIRVFKN KD+GV+FPFNQPMKIYSSLWNADDWATRGGLEKT+W KAPF+ASY+
Sbjct:    8 LCLTFLILATVAFGVPPKKSINVPFGRNYFPTWAFDHIKYLNGGSEVHLVLDKYTGTGFQSKGSYLFGHFSMHIKMVAGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGAGNREQRINLWFDPSKDYHSYSVLWNMYQIVFFVDDVPIRVFKNSKDVGVKFPFNQPMKIYSSLWNADDWATRGGLEKTNWEKAPFVASYR 221          
BLAST of FC930062 vs. ExPASy Swiss-Prot
Match: XTH4_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 4 OS=Arabidopsis thaliana GN=XTH4 PE=1 SV=1)

HSP 1 Score: 377.867 bits (969), Expect = 2.970e-104
Identity = 177/225 (78.67%), Postives = 199/225 (88.44%), Query Frame = 1
Query:   22 LEMASKIWILLLGILFMVSATM--GVPPRKPVNVPFGRNYMPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGSVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKACHFYSVLWNMYQIVFFVDDIPIRVFKNCKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYK 690
            + ++S  W L+  +  MVS+TM   +PPRK ++VPFGRNY+PTWAFDH K FNGGSE+QL LDKYTGTGFQSKGSYLFGHFSM +KL  GD+AG VTAFYLSS N+EHDEIDFEFLGNRTGQP ILQTNVFTGGKG+REQRIYLWFDP+KA H YS+LWNMYQIVFFVD+IPIR FKN KDLGVRFPFNQPMK+YSSLWNADDWATRGGLEKT+W+ APF+ASYK
Sbjct:    1 MTVSSSPWALM-ALFLMVSSTMVMAIPPRKAIDVPFGRNYVPTWAFDHQKQFNGGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSSTNNEHDEIDFEFLGNRTGQPAILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSILWNMYQIVFFVDNIPIRTFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNWANAPFVASYK 224          
BLAST of FC930062 vs. ExPASy Swiss-Prot
Match: XTH_BRAOB (Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1)

HSP 1 Score: 376.711 bits (966), Expect = 6.617e-104
Identity = 175/223 (78.48%), Postives = 195/223 (87.44%), Query Frame = 1
Query:   22 LEMASKIWILLLGILFMVSATMGVPPRKPVNVPFGRNYMPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGSVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKACHFYSVLWNMYQIVFFVDDIPIRVFKNCKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYK 690
            + ++S  W L+   L   S  M +PPRK ++VPFGRNY+PTWAFDH K  NGGSE+QL LDKYTGTGFQSKGSYLFGHFSM +KL  GD+AG VTAFYLSS N+EHDEIDFEFLGNRTGQP ILQTNVFTGGKG+REQRIYLWFDP+KA H YSVLWN+YQIVFFVD+IPIRVFKN KDLGVRFPFNQPMK+YSSLWNADDWATRGGLEKT+W+ APFIASY+
Sbjct:    1 MAVSSTPWALVALFLMASSTVMAIPPRKAIDVPFGRNYVPTWAFDHQKQLNGGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSSTNNEHDEIDFEFLGNRTGQPVILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSVLWNLYQIVFFVDNIPIRVFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNWANAPFIASYR 223          
BLAST of FC930062 vs. ExPASy Swiss-Prot
Match: XTH_WHEAT (Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH PE=2 SV=1)

HSP 1 Score: 362.844 bits (930), Expect = 9.888e-100
Identity = 168/214 (78.50%), Postives = 187/214 (87.38%), Query Frame = 1
Query:   49 LLLGILFMVSATMGVPPRKPVNVPFGRNYMPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGSVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKACHFYSVLWNMYQIVFFVDDIPIRVFKNCKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYK 690
            LL  +  ++   +   PRKPV+VPF +NY+PTWA DHI Y NGG E+QL LDK TGTGFQ++GSYLFGHFSM +KLV GDSAG+VTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVF+GGKGDREQRIYLWFDPTK  H YSVLWN+Y I FFVDD PIRVFKN KDLGVR+PF+QPMK+YSSLWNADDWATRGG EKTDWSKAPF+ASY+
Sbjct:    8 LLAVVAAVLLRGVAAAPRKPVDVPFDKNYVPTWAQDHIHYVNGGREVQLSLDKTTGTGFQTRGSYLFGHFSMHIKLVGGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFSGGKGDREQRIYLWFDPTKDYHSYSVLWNLYMIAFFVDDTPIRVFKNSKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYR 221          
BLAST of FC930062 vs. ExPASy Swiss-Prot
Match: XTH_TOBAC (Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum GN=XTH PE=2 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 9.577e-95
Identity = 164/215 (76.28%), Postives = 183/215 (85.12%), Query Frame = 1
Query:   49 LLLGILFMVSATMGVP--PRKPVNVPFGRNYMPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGSVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKACHFYSVLWNMYQIVFFVDDIPIRVFKNCKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASY 687
            LL  I+ +  + +G+   PRKPV+VPF +NY P+WA  HIKY +GGS + L LD+ +G GFQSK SYLFGHFSM++KLV GDSAG VTAFYLSS N+EHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTK  H YSVLWN +QIV FVDD+PIR FKN KDLGV+FPFNQPMKIYSSLW+ADDWATRGGLEKTDWS APF ASY
Sbjct:    6 LLFSIVLINLSLLGLCGYPRKPVDVPFWKNYEPSWASHHIKYLSGGSTVDLVLDRSSGAGFQSKKSYLFGHFSMKLKLVGGDSAGVVTAFYLSSNNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKGYHSYSVLWNTFQIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGGLEKTDWSNAPFTASY 220          
BLAST of FC930062 vs. ExPASy Swiss-Prot
Match: XTH1_SOLLC (Probable xyloglucan endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum GN=XTH1 PE=2 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.294e-91
Identity = 155/197 (78.68%), Postives = 172/197 (87.31%), Query Frame = 1
Query:   97 PRKPVNVPFGRNYMPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGSVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKACHFYSVLWNMYQIVFFVDDIPIRVFKNCKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASY 687
            PR+PV+VPF +NY P+WA  HIK+ NGG+   L LD+ +G GFQSK SYLFGHFSM+M+LV GDSAG VTAFYLSS N+EHDEIDFEFLGNRTGQPYILQTNVFTGGKG+REQRIYLWFDPTK  H YSVLWN Y IV FVDD+PIR FKN KDLGV+FPFNQPMKIYSSLW+ADDWATRGGLEKT+W+ APF ASY
Sbjct:   25 PRRPVDVPFWKNYEPSWASHHIKFLNGGTTTDLILDRSSGAGFQSKKSYLFGHFSMKMRLVGGDSAGVVTAFYLSSNNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGNREQRIYLWFDPTKGYHSYSVLWNTYLIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGGLEKTNWANAPFTASY 221          
BLAST of FC930062 vs. ExPASy Swiss-Prot
Match: BRU1_SOYBN (Brassinosteroid-regulated protein BRU1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 3.315e-71
Identity = 124/190 (65.26%), Postives = 147/190 (77.37%), Query Frame = 1
Query:  121 FGRNYMPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGSVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKACHFYSVLWNMYQIVFFVDDIPIRVFKNCKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYK 690
            F +++  TW  D  K FNGG  + L LDK +G+GF+SK  YLFG   MQ+KLV G+SAG+VTA+YLSSQ   HDEIDFEFLGN +G PYIL TN+FT GKG+REQ+ YLWFDPT+  H YS++W    I+F VD+ PIRVFKN + LGV FP NQPM+IYSSLWNADDWATRGGL KTDWSKAPF A Y+
Sbjct:   32 FYQDFDLTWGGDRAKIFNGGQLLSLSLDKVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNLSGDPYILHTNIFTQGKGNREQQFYLWFDPTRNFHTYSIIWKPQHIIFLVDNTPIRVFKNAEPLGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYR 221          
The following BLAST results are available for this feature:
BLAST of FC930062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
XTHB_PHAAN7.299e-11183.26Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTHA_PHAAN3.623e-11083.71Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH_SOYBN1.798e-10982.49Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH5_ARATH4.145e-10682.24Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH4_ARATH2.970e-10478.67Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH_BRAOB6.617e-10478.48Xyloglucan endotransglucosylase/hydrolase OS=Brass... [more]
XTH_WHEAT9.888e-10078.50Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_TOBAC9.577e-9576.28Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH1_SOLLC1.294e-9178.68Probable xyloglucan endotransglucosylase/hydrolase... [more]
BRU1_SOYBN3.315e-7165.26Brassinosteroid-regulated protein BRU1 OS=Glycine ... [more]

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Properties
Property NameValue
Genbank descriptionC34003D05EF PostHarvC1 Citrus clementina cDNA clone C34003D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930062 ID=FC930062; Name=FC930062; organism=Citrus clementina; type=EST; length=707bp
GACATCCACATACACTTCTCTCTAGAAATGGCTTCAAAAATATGGATTCT
GCTTCTGGGTATTTTGTTTATGGTGTCAGCAACAATGGGAGTTCCACCAA
GAAAACCTGTGAATGTCCCATTCGGCAGAAACTACATGCCCACTTGGGCT
TTTGATCACATCAAATACTTCAATGGTGGCTCTGAGATTCAGCTTCATCT
TGACAAATACACGGGCACTGGCTTCCAATCCAAAGGAAGTTACTTGTTCG
GCCATTTCAGTATGCAAATGAAATTGGTTCCGGGGGATTCGGCTGGATCT
GTCACTGCTTTTTATCTGTCTTCTCAAAACTCAGAGCATGATGAAATCGA
TTTTGAGTTCTTGGGCAACAGAACAGGACAGCCTTACATTCTGCAAACAA
ATGTGTTCACTGGAGGAAAGGGTGACAGAGAACAAAGAATCTATCTTTGG
TTTGATCCAACCAAAGCTTGCCACTTCTACTCTGTGCTCTGGAATATGTA
TCAGATTGTATTCTTCGTGGATGACATACCAATTAGAGTGTTCAAAAATT
GCAAAGATTTGGGGGTTCGTTTCCCATTCAACCAACCGATGAAAATATAC
TCAAGTCTGTGGAATGCGGATGACTGGGCCACAAGAGGTGGACTTGAGAA
AACAGATTGGTCCAAGGCTCCTTTCATTGCTTCATACAAGGCTTCATATT
GATGCTG
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