FC930063

Overview
NameFC930063
Unique NameFC930063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15097 contig Ccv1_Contig15097:1..636. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC930063 vs. ExPASy Swiss-Prot
Match: AOX4_ARATH (Alternative oxidase 4, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=AOX4 PE=1 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 7.895e-55
Identity = 112/184 (60.87%), Postives = 130/184 (70.65%), Query Frame = 3 
Query:   96 SVASVNTIKTLRFNPPSSPRSLSRKFCRVQATILQDXXXXXXXXXSSPLKNF----PNDDEPPETGSTSALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMHESFGWWTRADYLKAHFAESWNEMHHSLIMEELGGNA*RFDRFLAQHIAVAYYFVTGF 635
            +V+  ++ + L   P SS R L R   RVQATILQD         S   +      P ++    + STSA E W+IK EQ VN+ LT+SVI +LD LYRDR YARFFVLETIARVPYFAF+SVLHM+E+FGWW RADYLK HFAESWNEMHH LIMEELGGN+  FDRFLAQHIA  YYF+T F
Sbjct:   27 AVSYSSSHRLLHHLPLSSRRLLLRNNHRVQATILQDDEEKVVVEESFKAETSTGTEPLEEPNMSSSSTSAFETWIIKLEQGVNVFLTDSVIKILDTLYRDRTYARFFVLETIARVPYFAFMSVLHMYETFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNSWWFDRFLAQHIATFYYFMTVF 210
The following BLAST results are available for this feature:
BLAST of FC930063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AOX4_ARATH7.895e-5560.87Alternative oxidase 4, chloroplastic/chromoplastic... [more]
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Properties
Property NameValue
Genbank descriptionC34003D06EF PostHarvC1 Citrus clementina cDNA clone C34003D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930063 ID=FC930063; Name=FC930063; organism=Citrus clementina; type=EST; length=636bp
GGATCGTCTTGGTGGGAAAGTCTCTGGTAACAGAAATGATGACAACTCTC
TCTCAAACAGTATCGGTCTTTTCCAATAAAGCAATAGATCTTAAAAGCGT
AGCTTCTGTCAACACCATCAAGACTTTGCGTTTCAACCCTCCCTCTTCAC
CTCGATCGCTATCCAGGAAGTTTTGTCGAGTTCAAGCCACAATTTTGCAA
GATGAAGAGGAGAAAGTGGTGGTAGAGGAGTCATCTCCACTCAAGAATTT
TCCAAATGATGATGAGCCACCCGAGACTGGGTCAACTAGTGCATTGGAAA
AATGGGTTATCAAGTTTGAACAATCTGTTAATATCTTACTTACGGAATCT
GTGATAATGGTACTTGATGCTTTGTATCGTGACCGGGATTATGCAAGGTT
CTTTGTACTGGAGACTATTGCTAGAGTTCCTTATTTTGCATTTATTTCTG
TTCTGCACATGCATGAGAGTTTTGGCTGGTGGACAAGAGCAGATTACCTG
AAAGCTCATTTTGCTGAGAGCTGGAATGAGATGCATCACTCGCTCATAAT
GGAAGAATTGGGAGGAAATGCTTGAAGGTTCGATCGCTTTCTTGCGCAGC
ATATAGCCGTTGCTTATTATTTTGTGACAGGCTTCA
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