FC930103

Overview
NameFC930103
Unique NameFC930103
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8478 contig Ccv1_Contig8478:650..1383. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930103 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.838e-50
Identity = 98/211 (46.45%), Postives = 133/211 (63.03%), Query Frame = 2
Query:    2 VLLTLTGILMTVLYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXXWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPNPELALDSLSICMTISGWVFMISVGFNAAASVRVSNELGAANP 634
            VL     + +T LY +S PIL  +G+S  IA    +F  G+IPQI+A+AL  P+Q+FLQAQ+IV P AY+S    ++H LL+W+                   WW++V    +YI+ S  CK TW GF+ +AF G+  +FKL+ ASAVMLCLE WY Q LV+++GLL NP ++LD++SICM    W     +G +AA SVRVSNELGA NP
Sbjct:  138 VLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFSWWLLVAVNGMYILMSPNCKETWTGFSTRAFRGIWPYFKLTVASAVMLCLEIWYNQGLVIISGLLSNPTISLDAISICMYYLNWDMQFMLGLSAAISVRVSNELGAGNP 348          
BLAST of FC930103 vs. ExPASy Swiss-Prot
Match: S47A2_MOUSE (Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.961e-19
Identity = 61/204 (29.90%), Postives = 104/204 (50.98%), Query Frame = 2
Query:   38 LYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQ-KFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXXWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPNPELALDSLSICMTISGWVFMISVGFNAAASVRVSNELGAANPNRRR 646
            +++ +  +L+ L + PD+A  A V+V   IP + A A  F +Q ++LQ+Q I+ P   +  A  VV++ ++   +Y                 + +    F+Y+       HTW G+T + F    S+ +L+  S  M+C+E W F+I   LAGL+   EL   + ++   ++   +M+  GF  AASVRV N LGA N ++ R
Sbjct:  142 IFLNTERLLLLLRQDPDVARLAQVYVMICIPALPA-AFLFQLQTRYLQSQGIIMPQVIVGIAANVVNVGMNAFLLYALDLGVVGSAWANTTSQFFLSALLFLYVWWKRIHIHTWGGWTRECFQEWSSYTRLAIPSMFMVCIEWWTFEIGTFLAGLVNVTELG--AQAVIYELASVAYMVPFGFGVAASVRVGNALGAGNADQAR 342          
BLAST of FC930103 vs. ExPASy Swiss-Prot
Match: S47A1_RABIT (Multidrug and toxin extrusion protein 1 OS=Oryctolagus cuniculus GN=SLC47A1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.551e-18
Identity = 59/210 (28.10%), Postives = 106/210 (50.48%), Query Frame = 2
Query:    2 VLLTLTGILMTVLYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXXWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPNPELALDSLSICMTISGWVFMISVGFNAAASVRVSNELGAAN 631
            ++L L  +    L++ ++ IL+   + P ++     +V   IP + A  L     K+L  Q IV P      A  +V+ L +++ VY+                + + +  F+YI++S   + TW G++++      SFF+L+  S +MLC+E W ++I   L+G+L   EL   S++  + +   V+MI +G + A +VRV N LGA N
Sbjct:  120 LILLLCCLPCWALFLNTQHILLLFRQDPAVSRLTQTYVTIFIPALPATFLYTLQVKYLLNQGIVLPQVVTGVAANLVNALANYLFVYQLHLGVMGSALANTVAQFTLALLLFLYILRSKVYQATWGGWSLECLQDWASFFRLAIPSMLMLCMEWWAYEIGSFLSGILGMVELGAQSVTYELAVI--VYMIPMGLSVAVNVRVGNALGAGN 327          
BLAST of FC930103 vs. ExPASy Swiss-Prot
Match: S47A1_DANRE (Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.696e-18
Identity = 61/216 (28.24%), Postives = 110/216 (50.93%), Query Frame = 2
Query:    2 VLLTLTGILMTVLYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQ-KFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXXWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPNPELALDSLSICMTISGWVFMISVGFNAAASVRVSNELGAANPNRRR 646
            ++L L       L + + PIL+ + +SP++AS + ++V   +P + A A  + +Q ++LQ Q I+ P      A  +++ L+++V ++                 + + +  +VYI   +  K TW G++        +F +L+  S +MLC+E W ++I   LAGL+   EL   + S+   ++   +M  +GF  AASVRV N LGA N  R +
Sbjct:  139 LILLLACFPCWALLINTEPILLAVRQSPNVASLSQLYVKIFMPALPA-AFMYQLQGRYLQNQGIIWPQVITGAAGNILNALINYVFLHLLELGVAGSAAANTISQYSLAVFLYVYIRWKNLHKATWDGWSRDCLQEWGAFIRLALPSMLMLCVEWWTYEIGGFLAGLISETELG--AQSVVYELATIAYMFPLGFAVAASVRVGNALGAGNTERAK 351          
BLAST of FC930103 vs. ExPASy Swiss-Prot
Match: S47A1_XENTR (Multidrug and toxin extrusion protein 1 OS=Xenopus tropicalis GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.005e-17
Identity = 59/217 (27.19%), Postives = 105/217 (48.39%), Query Frame = 2
Query:   20 GILMTVLYVF--------SRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXXWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPNPELALDSLSICMTISGWVFMISVGFNAAASVRVSNELGAANPNRRR 646
            GIL+ +L+ F        +  IL+   + P+++    ++V   +P + A  L   + K+LQ Q I+ P         + + L +++ +Y                 +I +I  F+YIV       TW G++   F    +F +L+ AS +MLC+E W F+I + LAG+L   +LA  ++   + I   V++I +G   A S+RV + LGA N  + +
Sbjct:  133 GILILLLFCFPCWALLINTESILLLFRQDPEVSKLTQIYVLIFLPALPAAFLYQLLAKYLQNQGIIYPQVLTGFIANIFNALFNYILLYVLGLGVMGSACANTVSQFIQMILLFLYIVWRRLYADTWGGWSQACFEEWGAFIRLAVASMLMLCIEWWAFEISMFLAGVLGMVDLAAQAIIYQVAIV--VYLIPLGLCIAGSIRVGHGLGAGNTEQAK 347          
BLAST of FC930103 vs. ExPASy Swiss-Prot
Match: S47A1_MOUSE (Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.005e-17
Identity = 59/198 (29.80%), Postives = 97/198 (48.99%), Query Frame = 2
Query:   38 LYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXXWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPNPELALDSLSICMTISGWVFMISVGFNAAASVRVSNELGAAN 631
            L++ +  IL+   + PD++     +V   IP + A  L     K+L  Q IV P      A  +V+ L ++V +Y                 + + I  F+YI+     + TW G++ +      SF +L+  S +MLC+E W +++   L+G+L   EL   S++  + I   V+MI  GF+ AA+VRV N LGA N
Sbjct:  133 LFINTEQILLLFRQDPDVSRLTQTYVMIFIPALPAAFLYTLQVKYLLNQGIVLPQIMTGIAANLVNALANYVFLYHLHLGVMGSALANTISQFALAIFLFLYILWRRLHQATWGGWSWECLQDWASFLRLAIPSMLMLCIEWWAYEVGSFLSGILGMVELGAQSITYELAII--VYMIPSGFSVAANVRVGNALGAGN 328          
BLAST of FC930103 vs. ExPASy Swiss-Prot
Match: S47A1_HUMAN (Multidrug and toxin extrusion protein 1 OS=Homo sapiens GN=SLC47A1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.005e-17
Identity = 56/203 (27.59%), Postives = 101/203 (49.75%), Query Frame = 2
Query:   38 LYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXXWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPNPELALDSLSICMTISGWVFMISVGFNAAASVRVSNELGAANPNRRR 646
            L++ ++ IL+   + PD++     +V   IP + A  L     K+L  Q IV P      A  +V+ L +++ +++                + + +  F+YI+     + TW G++++      SF +L+  S +MLC+E W +++   L+G+L   EL   S+   + I   V+M+  GF+ AASVRV N LGA +  + R
Sbjct:  133 LFLNTQHILLLFRQDPDVSRLTQTYVTIFIPALPATFLYMLQVKYLLNQGIVLPQIVTGVAANLVNALANYLFLHQLHLGVIGSALANLISQYTLALLLFLYILGKKLHQATWGGWSLECLQDWASFLRLAIPSMLMLCMEWWAYEVGSFLSGILGMVELGAQSIVYELAII--VYMVPAGFSVAASVRVGNALGAGDMEQAR 333          
BLAST of FC930103 vs. ExPASy Swiss-Prot
Match: S47A1_RAT (Multidrug and toxin extrusion protein 1 OS=Rattus norvegicus GN=Slc47a1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.924e-17
Identity = 57/198 (28.79%), Postives = 97/198 (48.99%), Query Frame = 2
Query:   38 LYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXXWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPNPELALDSLSICMTISGWVFMISVGFNAAASVRVSNELGAAN 631
            L++ +  IL+   + PD++     +V   IP + A  L     K+L  Q IV P      A  +V+ L +++ +++                + + I  F+YI+       TW G++ +      SF +L+  S +MLC+E W +++   L+G+L   EL   S++  + I   V+MI  GF+ AA+VRV N LGA N
Sbjct:  132 LFINTEQILLLFRQDPDVSRLTQTYVMVFIPALPAAFLYTLQVKYLLNQGIVLPQVITGIAANLVNALANYLFLHQLHLGVMGSALANTISQFALAIFLFLYILWRKLHHATWGGWSWECLQDWASFLQLAIPSMLMLCIEWWAYEVGSFLSGILGMVELGAQSITYELAII--VYMIPAGFSVAANVRVGNALGAGN 327          
BLAST of FC930103 vs. ExPASy Swiss-Prot
Match: S47A1_PONAB (Multidrug and toxin extrusion protein 1 OS=Pongo abelii GN=SLC47A1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.924e-17
Identity = 56/203 (27.59%), Postives = 99/203 (48.77%), Query Frame = 2
Query:   38 LYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXXWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPNPELALDSLSICMTISGWVFMISVGFNAAASVRVSNELGAANPNRRR 646
            L++ ++ IL+   + PD++     +V   IP + A  L     K+L  Q IV P      A  +V+ L +++ +++                + + +  F YI+     + TW G++++      SF  L+  S +MLC+E W +++   L+G+L   EL   S+   + I   V+M+  GF+ AASVRV N LGA +  + R
Sbjct:  133 LFLNTQHILLLFRQDPDVSRLTQTYVTIFIPALPATFLYMLQVKYLLNQGIVLPQIVTGVAANLVNALANYLFLHQLHLGAIGSALANLISQYTLALLLFFYILGKKLHQATWGGWSLECLQDWASFLHLAVPSMLMLCMEWWAYEVGSFLSGILGMVELGAQSIVYELAII--VYMVPAGFSVAASVRVGNALGAGDMEQAR 333          
BLAST of FC930103 vs. ExPASy Swiss-Prot
Match: YAO6_SCHPO (Uncharacterized transporter C11D3.06 OS=Schizosaccharomyces pombe GN=SPAC11D3.06 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.819e-17
Identity = 64/221 (28.96%), Postives = 106/221 (47.96%), Query Frame = 2
Query:    2 VLLTLTGILMTVLYV-------FSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXXWWI--VVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPNPELALDSLSICMTISGWVFMISVGFNAAASVRVSNELGAANPN 637
            +LL    I++++LY+       +S+PILIFL ++P++A ++  F+  LIP    Y     ++KFLQ Q I    +YI   T  +++ L+++ V+                +W+  +++ Q+   VK       W G+  +       F KLS    VM+  E W F+I+ L+AG L    LA  + S+ MT    +  I  G     S RV+  LGA  P+
Sbjct:   87 ILLQTGFIVLSILYLPICLVWWYSKPILIFLHQTPELAEASQKFLRYLIPGGLGYVCFELLKKFLQTQEITRAGSYILLVTSPLNVALNFLLVHYYGLGLKGAPLATGLSYWLSFILLTQYAKYVKG---AEAWNGWNKRCLENFGPFVKLSLLGIVMVGTEWWAFEIVALVAGKLGAVPLA--AQSVIMTTDQLLNTIPFGLGIITSNRVAYYLGAGLPD 302          
The following BLAST results are available for this feature:
BLAST of FC930103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
TT12_ARATH5.838e-5046.45Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
S47A2_MOUSE6.961e-1929.90Multidrug and toxin extrusion protein 2 OS=Mus mus... [more]
S47A1_RABIT1.551e-1828.10Multidrug and toxin extrusion protein 1 OS=Oryctol... [more]
S47A1_DANRE7.696e-1828.24Multidrug and toxin extrusion protein 1 OS=Danio r... [more]
S47A1_XENTR1.005e-1727.19Multidrug and toxin extrusion protein 1 OS=Xenopus... [more]
S47A1_MOUSE1.005e-1729.80Multidrug and toxin extrusion protein 1 OS=Mus mus... [more]
S47A1_HUMAN1.005e-1727.59Multidrug and toxin extrusion protein 1 OS=Homo sa... [more]
S47A1_RAT2.924e-1728.79Multidrug and toxin extrusion protein 1 OS=Rattus ... [more]
S47A1_PONAB2.924e-1727.59Multidrug and toxin extrusion protein 1 OS=Pongo a... [more]
YAO6_SCHPO3.819e-1728.96Uncharacterized transporter C11D3.06 OS=Schizosacc... [more]

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Properties
Property NameValue
Genbank descriptionC34003G11EF PostHarvC1 Citrus clementina cDNA clone C34003G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930103 ID=FC930103; Name=FC930103; organism=Citrus clementina; type=EST; length=733bp
GGTTCTGCTGACGCTCACGGGCATTTTAATGACAGTTCTATACGTCTTTT
CGAGACCAATTTTGATTTTTCTAGGGGAGTCGCCAGATATTGCCTCATCA
GCGGCAGTTTTTGTCTACGGCCTGATACCCCAAATCTTTGCATACGCCTT
GAACTTCCCAATCCAAAAATTTTTGCAAGCACAAAGCATAGTGGCTCCAA
GTGCATACATTTCAACGGCCACGTTAGTGGTGCATCTGCTGCTAAGTTGG
GTTGCAGTCTACGAAATCGGGCTTGGCTTGATTGGCGCCTCACTGATCTT
GAGCTTATCCTGGTGGATTGTTGTGATTGCTCAGTTTGTTTATATTGTTA
AAAGTGATAGGTGTAAGCACACGTGGCGTGGGTTTACTGTTCAGGCCTTC
TCTGGTCTCCCTTCCTTCTTCAAACTATCGGCTGCCTCCGCTGTGATGCT
GTGCTTGGAGACGTGGTACTTTCAGATTCTTGTTCTATTGGCTGGTTTGT
TACCAAATCCGGAGTTGGCTTTGGACTCTCTTTCCATTTGCATGACGATA
TCCGGATGGGTGTTTATGATATCGGTCGGGTTTAATGCAGCTGCTAGTGT
TAGAGTCAGCAATGAGCTAGGAGCGGCGAATCCAAATCGGCGTCGTTTTC
AGTGGTAATGGTGACGTTAGTTTCCTTCGTGATCTCCGTGATGGCGGCGA
TAATCATTCTAGCCCTACGTGATGTCATCAGCT
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