FC930105

Overview
NameFC930105
Unique NameFC930105
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5971 contig Ccv1_Contig5971:1..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930105 vs. ExPASy Swiss-Prot
Match: TI10A_ARATH (Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.709e-26
Identity = 72/150 (48.00%), Postives = 94/150 (62.67%), Query Frame = 2
Query:  245 EKSSFSQTCSLLSQYLKEGGSFGDLSLGISSNIEANGVPEIPRRPAATTMNLFPVSDNSGQDVSVRNMVAPRNWESMNLFPQQAGFA------PKNDTPNMIDSSLN-KPAPQTAQMTIFYGGQVIAFNDFPADKANEIMQLAKHGSSLS 673
            +K SFSQTCS LSQYLKE GSFGDLSLG++   + NG     R+P  TTM+LFP  + S  D  V+++      +  NLFP+Q  F+      PK D   M  ++ + KP  QTA +TIFY GQVI FNDF A+KA E++ LA  G++ S
Sbjct:   19 KKPSFSQTCSRLSQYLKENGSFGDLSLGMACKPDVNGTLGNSRQP-TTTMSLFP-CEASNMDSMVQDV------KPTNLFPRQPSFSSSSSSLPKEDVLKMTQTTRSVKPESQTAPLTIFYAGQVIVFNDFSAEKAKEVINLASKGTANS 160          
BLAST of FC930105 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.568e-21
Identity = 63/149 (42.28%), Postives = 87/149 (58.39%), Query Frame = 2
Query:  248 KSSFSQTCSLLSQYLKEGGSFGDLSLGISSNIEANGVPEIPRRPAATTMNLFPVSDNSGQDVSVRNMVAPRNWESMNLFPQQAGFAPKNDTPNMIDSSLNK-------PAPQTAQMTIFYGGQVIAFNDFPADKANEIMQLAKHGSSLS 673
            K SFSQTC+ LS+YLKE GSFGDLSLG++   + NG    P     T MNLFP  + SG D S        + +   +FP+Q+ F+  + +    D  + K       P  Q+A +TIFYGG+V+ F+DF A+KA E++ LA  GS+ S
Sbjct:   15 KPSFSQTCTRLSRYLKEKGSFGDLSLGMTCKPDVNGGSRQP-----TMMNLFPC-EASGMDSSA----GQEDIKPKTMFPRQSSFSSSSSSGTKEDVQMIKETTKSVKPESQSAPLTIFYGGRVMVFDDFSAEKAKEVIDLANKGSAKS 153          
BLAST of FC930105 vs. ExPASy Swiss-Prot
Match: TI11B_ARATH (Protein TIFY 11B OS=Arabidopsis thaliana GN=TIFY11B PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.379e-15
Identity = 53/149 (35.57%), Postives = 82/149 (55.03%), Query Frame = 2
Query:  242 PEKSSFSQTCSLLSQYLKEGGSFGDLSLGISSNIEANGVPEIPRRPAATTMNLFPVSDNSGQDVSVRNMVA--PRNWESMNLFPQQAGFAPKNDTPNMID-SSLNKPAPQT--AQMTIFYGGQVIAFNDFPADKANEIMQLAKHGSSLS 673
            PEKS+FSQ CSLLS+YLKE GSFG++++G++                 + + L    D  GQ   ++ +     R ++ +  F          D    ID S   K AP++  +Q+TIF+GG+V+ FN+FP DKA EIM++AK  + ++
Sbjct:    7 PEKSNFSQRCSLLSRYLKEKGSFGNINMGLARK---------------SDLELAGKFDLKGQQNVIKKVETSETRPFKLIQKFSIGEASTSTEDKAIYIDLSEPAKVAPESGNSQLTIFFGGKVMVFNEFPEDKAKEIMEVAKEANHVA 140          
The following BLAST results are available for this feature:
BLAST of FC930105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TI10A_ARATH4.709e-2648.00Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10... [more]
TI10B_ARATH1.568e-2142.28Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
TI11B_ARATH6.379e-1535.57Protein TIFY 11B OS=Arabidopsis thaliana GN=TIFY11... [more]
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Properties
Property NameValue
Genbank descriptionC34003H01EF PostHarvC1 Citrus clementina cDNA clone C34003H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930105 ID=FC930105; Name=FC930105; organism=Citrus clementina; type=EST; length=751bp
GAAGCCCAAGAACAGGCTTAAAAAGCACCCCAAATATGTTATTATTCCTC
GTGTCCAATCAACAGATAAGGCTTTTTCTCCTTACAAATACAGATTGATC
ATCCAACAGAACAACTTCACCAATTCAATTCTGCAGCGTCAGTTGCAGCG
CACTAGTTTTATTTTTGCTCGTGGGTTTCCGCTTCTGAGTTGGTTAAACA
CAACAAGTATGGCGAGCTCGTCGGAGATGTCGGTTAACTTGCCGGAGAAA
TCAAGTTTCTCTCAGACGTGTAGTCTTTTGAGTCAGTACTTGAAAGAGGG
AGGTAGCTTTGGAGATCTTAGCCTCGGGATATCAAGCAACATTGAAGCTA
ATGGGGTACCCGAGATCCCGCGGCGGCCAGCAGCTACAACTATGAATTTG
TTTCCAGTAAGTGACAACTCTGGACAAGATGTTTCAGTTCGAAACATGGT
GGCTCCTCGAAACTGGGAATCAATGAATTTGTTCCCTCAGCAAGCTGGTT
TTGCTCCTAAGAATGATACCCCTAACATGATAGATTCAAGTTTAAACAAG
CCCGCGCCGCAAACTGCTCAAATGACTATATTTTATGGCGGACAAGTGAT
TGCGTTCAATGATTTTCCTGCTGATAAAGCAAATGAAATCATGCAATTAG
CAAAGCACGGGAGCTCACTGAGCCATGGTACCGCATATCCTCCTATGCAA
ACTGCGGCCCAGGGTACACTCTTTGCTGCTAGTTACCCAAAAGTCAGTGA
T
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