FC930108

Overview
NameFC930108
Unique NameFC930108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930108_ssr40 microsatellite FC930108_ssr40:40..49. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15104 contig Ccv1_Contig15104:1..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930108 vs. ExPASy Swiss-Prot
Match: AMP1A_ARATH (Methionine aminopeptidase 1A OS=Arabidopsis thaliana GN=MAP1A PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 6.952e-77
Identity = 132/174 (75.86%), Postives = 154/174 (88.51%), Query Frame = 2
Query:  149 MAGGSDAAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVT 670
            MA  SDA+   +LSC RC KPAHLQCPKC++LKLPRE A+FCTQ+CFKA+W+SHKSVH+KA+LS+ G  +NS L+S+GW YC+KKGQARTPKLPHFDWTG L+ YPIS+K  VPA IE PDWA+DGTPKVEPNSDLQHVVEIKTP+QI+RMRETC+IAREVLDAAAR+I PGVT
Sbjct:    1 MASESDASSIATLSCARCEKPAHLQCPKCIDLKLPREQASFCTQECFKAAWSSHKSVHVKAQLSSIGD-QNSDLISQGWLYCVKKGQARTPKLPHFDWTGPLKQYPISTKRVVPAEIEKPDWAIDGTPKVEPNSDLQHVVEIKTPEQIQRMRETCKIAREVLDAAARVIHPGVT 173          
BLAST of FC930108 vs. ExPASy Swiss-Prot
Match: AMPM1_CHICK (Methionine aminopeptidase 1 OS=Gallus gallus GN=METAP1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.053e-24
Identity = 69/171 (40.35%), Postives = 91/171 (53.22%), Query Frame = 2
Query:  167 AAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRP-YPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIK--TPDQIERMRETCRIAREVLDAAARMIRPGVT 670
            A ET       C   A LQCP C  LKL  +G+ FC+Q+CFK SW +HK +H KAK       E +      W     +G   T     + +TG LRP YP++    VP+YI+ PD+A       E    L+   +IK  +P+ IE MR  CR+AREVLD AA M++ GVT
Sbjct:    3 AVETRVCETAGCSSEAKLQCPTC--LKLGIQGSYFCSQECFKGSWATHKLLHKKAK------DEKAKREVSSWTL---EGDINTNPWSGYRYTGKLRPHYPLTPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKILSPEDIEGMRVVCRLAREVLDVAAMMVKAGVT 162          
BLAST of FC930108 vs. ExPASy Swiss-Prot
Match: AMPM1_DANRE (Methionine aminopeptidase 1 OS=Danio rerio GN=metap1 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 4.003e-24
Identity = 65/171 (38.01%), Postives = 94/171 (54.97%), Query Frame = 2
Query:  167 AAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRP-YPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIK--TPDQIERMRETCRIAREVLDAAARMIRPGVT 670
            A ET       C   A LQCP C++L +  +G+ FC+Q+CFK SW +HK +H KAK       E +         C++K +  T   P + +TG LRP YP++    VP+ I+ PD+A       E    ++   +IK    ++IE MR  C++AREVLD AA M++PGVT
Sbjct:    3 AVETRECETEGCHSEAKLQCPTCIKLGI--QGSYFCSQECFKGSWATHKLLHKKAKEDKTNDEEKN---------CVEK-EVNTDPWPGYRYTGKLRPYYPLTPMRLVPSNIQRPDYADHPLGMSESEQTMKGTSQIKILNAEEIEGMRVVCKLAREVLDIAAMMVKPGVT 161          
BLAST of FC930108 vs. ExPASy Swiss-Prot
Match: AMPM1_HUMAN (Methionine aminopeptidase 1 OS=Homo sapiens GN=METAP1 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.828e-24
Identity = 68/171 (39.77%), Postives = 91/171 (53.22%), Query Frame = 2
Query:  167 AAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRP-YPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIK--TPDQIERMRETCRIAREVLDAAARMIRPGVT 670
            A ET       C   A LQCP C++L +  +G+ FC+Q+CFK SW +HK +H KAK       E +      W     +G   T     + +TG LRP YP+     VP+YI+ PD+A       E    L+   +IK  + + IE MR  CR+AREVLD AA MI+PGVT
Sbjct:    3 AVETRVCETDGCSSEAKLQCPTCIKLGI--QGSYFCSQECFKGSWATHKLLHKKAK------DEKAKREVSSWTV---EGDINTDPWAGYRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMRLVCRLAREVLDVAAGMIKPGVT 162          
BLAST of FC930108 vs. ExPASy Swiss-Prot
Match: AMPM1_PONAB (Methionine aminopeptidase 1 OS=Pongo abelii GN=METAP1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.918e-24
Identity = 68/171 (39.77%), Postives = 91/171 (53.22%), Query Frame = 2
Query:  167 AAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRP-YPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIK--TPDQIERMRETCRIAREVLDAAARMIRPGVT 670
            A ET       C   A LQCP C++L +  +G+ FC+Q+CFK SW +HK +H KAK       E +      W     +G   T     + +TG LRP YP+     VP+YI+ PD+A       E    L+   +IK  + + IE MR  CR+AREVLD AA MI+PGVT
Sbjct:    3 AVETRVCETDGCSSEAKLQCPTCIKLGI--QGSYFCSQECFKGSWATHKLLHKKAK------DEKAKREVSSWTV---EGDINTDPWAGYRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMRLVCRLAREVLDIAAGMIKPGVT 162          
BLAST of FC930108 vs. ExPASy Swiss-Prot
Match: AMPM1_XENLA (Methionine aminopeptidase 1 OS=Xenopus laevis GN=metap1 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.521e-23
Identity = 65/171 (38.01%), Postives = 91/171 (53.22%), Query Frame = 2
Query:  167 AAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRP-YPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKT--PDQIERMRETCRIAREVLDAAARMIRPGVT 670
            A E+       C   A LQCP C++L +  +G+ FC+Q+CFK SW +HK +H KAK       +        W      G+  T   P + +TG LRP YP++    VP+YI+ PD+A       E    L+   +IKT  P+ IE MR  CR+AREVL  AA M++ G+T
Sbjct:    3 AVESRVCETEGCSSEAKLQCPTCIKLGI--QGSYFCSQECFKGSWATHKLLHKKAK------DDKIKPEVSPW---TMDGEVNTDPWPGYRYTGKLRPHYPLTPMRPVPSYIQRPDYADHPLGMSESEQTLKGTSQIKTLSPEDIEGMRVVCRLAREVLGVAAMMVKSGIT 162          
BLAST of FC930108 vs. ExPASy Swiss-Prot
Match: AMPM1_BOVIN (Methionine aminopeptidase 1 OS=Bos taurus GN=METAP1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.987e-23
Identity = 67/171 (39.18%), Postives = 91/171 (53.22%), Query Frame = 2
Query:  167 AAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRP-YPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIK--TPDQIERMRETCRIAREVLDAAARMIRPGVT 670
            A ET       C   A LQCP C++L +  +G+ FC+Q+CFK SW +HK +H KAK       E +      W     +G   T     + +TG LRP YP+     VP+YI+ PD+A       E    L+   +IK  + + IE MR  CR+AREVLD AA +I+PGVT
Sbjct:    3 AVETRVCETDGCSSEAKLQCPTCIKLGI--QGSYFCSQECFKGSWATHKLLHKKAK------DEKAKREVSSWTV---EGDINTDPWAGYRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMRLVCRLAREVLDIAAGLIKPGVT 162          
BLAST of FC930108 vs. ExPASy Swiss-Prot
Match: AMPM1_MOUSE (Methionine aminopeptidase 1 OS=Mus musculus GN=Metap1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.682e-22
Identity = 67/171 (39.18%), Postives = 90/171 (52.63%), Query Frame = 2
Query:  167 AAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRP-YPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIK--TPDQIERMRETCRIAREVLDAAARMIRPGVT 670
            A ET       C   A LQCP C++L +  +G+ FC+Q+CFK SW +HK +H KAK       E +      W     +G   T     + +TG LRP YP+     VP+YI+ PD+A       E    L+   +IK  + + IE MR  CR+AREVLD AA MI+ GVT
Sbjct:    3 AVETRVCETDGCSSEAKLQCPTCIKLGI--QGSYFCSQECFKGSWATHKLLHKKAK------DEKAKREVCSWTV---EGDVNTDPWAGYRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMRLVCRLAREVLDIAAGMIKAGVT 162          
BLAST of FC930108 vs. ExPASy Swiss-Prot
Match: AMPM1_XENTR (Methionine aminopeptidase 1 OS=Xenopus tropicalis GN=metap1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.197e-22
Identity = 64/171 (37.43%), Postives = 90/171 (52.63%), Query Frame = 2
Query:  167 AAETTSLSCVRCGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRP-YPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIK--TPDQIERMRETCRIAREVLDAAARMIRPGVT 670
            A E+       C   A LQCP C++L +  +G+ FC+Q+CFK SW SHK +H KAK       +     +  W      G   T   P + +TG LRP YP++    VP+YI+ PD+A       E    L+   +IK  + + IE MR  CR+AREVL  AA M++ G+T
Sbjct:    3 AVESRVCETEGCSSEAKLQCPTCIKLGI--QGSYFCSQECFKGSWASHKLLHKKAK------DDKIKPETSPW---TMDGDINTDPWPGYRYTGKLRPHYPLTPMRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKILSTEDIEGMRVVCRLAREVLGVAAMMVKSGIT 162          
BLAST of FC930108 vs. ExPASy Swiss-Prot
Match: AMPM1_DICDI (Methionine aminopeptidase 1 OS=Dictyostelium discoideum GN=metap1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.614e-19
Identity = 58/158 (36.71%), Postives = 83/158 (52.53%), Query Frame = 2
Query:  200 CGKPAHLQCPKCMELKLPREGAAFCTQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVE-IKTPDQIERMRETCRIAREVLDAAARMIRPGVT 670
            CGKPA LQCP C+ LKL    + FC+Q+CFK  W  HK  H K        G+  +L S+                 ++ +TG LRP  I+     P  IELPD+A+   P  E  +D +++   I TP++IE MR+  +++REVLD A    + G+T
Sbjct:   11 CGKPAKLQCPTCVNLKL-ETPSHFCSQECFKTFWPLHKMYHQK--------GQPENLPSQ---------------FRNYKFTGPLRPTNITPMRKAPEGIELPDYAIGSIPISERVADRKNMANIIHTPEEIEIMRQLGKMSREVLDIAGNAAKVGMT 144          
The following BLAST results are available for this feature:
BLAST of FC930108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
AMP1A_ARATH6.952e-7775.86Methionine aminopeptidase 1A OS=Arabidopsis thalia... [more]
AMPM1_CHICK1.053e-2440.35Methionine aminopeptidase 1 OS=Gallus gallus GN=ME... [more]
AMPM1_DANRE4.003e-2438.01Methionine aminopeptidase 1 OS=Danio rerio GN=meta... [more]
AMPM1_HUMAN6.828e-2439.77Methionine aminopeptidase 1 OS=Homo sapiens GN=MET... [more]
AMPM1_PONAB8.918e-2439.77Methionine aminopeptidase 1 OS=Pongo abelii GN=MET... [more]
AMPM1_XENLA1.521e-2338.01Methionine aminopeptidase 1 OS=Xenopus laevis GN=m... [more]
AMPM1_BOVIN1.987e-2339.18Methionine aminopeptidase 1 OS=Bos taurus GN=METAP... [more]
AMPM1_MOUSE1.682e-2239.18Methionine aminopeptidase 1 OS=Mus musculus GN=Met... [more]
AMPM1_XENTR2.197e-2237.43Methionine aminopeptidase 1 OS=Xenopus tropicalis ... [more]
AMPM1_DICDI6.614e-1936.71Methionine aminopeptidase 1 OS=Dictyostelium disco... [more]

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Properties
Property NameValue
Genbank descriptionC34003H04EF PostHarvC1 Citrus clementina cDNA clone C34003H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930108 ID=FC930108; Name=FC930108; organism=Citrus clementina; type=EST; length=710bp
GGTTCCGCCGTGTCTCTCTTTCTCTGCAACCCTAGCCCGTCTCTCTCTCT
TTCCATCGACTCCTCTTTAGAATAAAAGTATCTAGTTCTGAAAAAAAAGA
AGAAGGAATAAAAGTATCCAGAAAGGGAAAGGGAGAGTTCACGATTCGAT
GGCCGGTGGATCAGATGCTGCGGAGACTACGAGCTTATCGTGTGTTCGAT
GTGGCAAGCCAGCTCATCTTCAGTGCCCAAAATGCATGGAGCTAAAGCTT
CCGCGTGAAGGCGCTGCTTTCTGTACTCAGGACTGCTTTAAAGCTTCTTG
GACCTCTCACAAATCTGTTCATTTGAAGGCAAAGCTGTCTGCGCCAGGAA
CTGGAGAAAATTCATCTTTGGTTAGTGAAGGTTGGCGTTATTGTATCAAG
AAAGGACAGGCTCGAACTCCAAAACTTCCCCATTTTGACTGGACTGGAAC
ACTGAGGCCATACCCCATATCTAGCAAGCTTACTGTACCTGCTTACATTG
AACTACCTGATTGGGCATTGGATGGAACACCCAAAGTTGAGCCCAATAGT
GATCTGCAGCATGTTGTTGAGATCAAAACTCCAGATCAAATTGAGAGAAT
GCGAGAAACATGTCGAATTGCAAGAGAGGTTTTGGATGCGGCTGCTCGGA
TGATTCGTCCTGGTGTTACACTGATGAATTGATCGAGTGGTCATGAGGCA
CTATTACTGC
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