FC930111

Overview
NameFC930111
Unique NameFC930111
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930111_ssr248 microsatellite FC930111_ssr248:248..257. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8032 contig Ccv1_Contig8032:27..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930111 vs. ExPASy Swiss-Prot
Match: SERC3_PONAB (Serine incorporator 3 OS=Pongo abelii GN=SERINC3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 47/168 (27.98%), Postives = 75/168 (44.64%), Query Frame = 1
Query:  223 RIAYCGLFALSLIVSWIL-REVAAPLMEKLPWINH----FHKTPSREWFETD------AVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLP-NEIVSFYESISKFGSGXXXXXXXXXXXXXXHRWNETWVGYDEQ----FWYVAL 678
            R+ Y  +  LS +VS+I+ R+     ++K+P         H+       + D      AV R+S    +FF + S+LM  VK  KDPR ++H+G W  KI     +++  F++P     S +  +   G+               H WNE+WV   E+     WY AL
Sbjct:   39 RLIYAFILLLSTVVSYIMQRKEMETYLKKIPGFCEGGFKIHEADINADKDCDVLVGYKAVYRISFAMAIFFFVFSLLMFKVKTSKDPRAAVHNGFWFFKIAALIGIMVGSFYIPGGYFSSVWFVVGMIGAALFILIQLVLLVDFAHSWNESWVNRMEEGNPRLWYAAL 206          
The following BLAST results are available for this feature:
BLAST of FC930111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SERC3_PONAB4.663e-1127.98Serine incorporator 3 OS=Pongo abelii GN=SERINC3 P... [more]
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Properties
Property NameValue
Genbank descriptionC34003H07EF PostHarvC1 Citrus clementina cDNA clone C34003H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930111 ID=FC930111; Name=FC930111; organism=Citrus clementina; type=EST; length=680bp
GCTTCTTCGTCGTCTCGCGGTCTCTCCTAATATTCTTCGCTTAGCGCTTG
CGATCATCGCCTTTTCTATTTCACTTTCCCTTTCTCCTTCAAATTCAATC
AAATATCCCAGTTTGTGAGAGAAGAGAAGATGTGGGCGGCGTCTTGTCTT
GCGTCGTGCTGTGCGGCGTGCGCGTGTGACGCGTGCCGCTCGGCTGTGTC
GGGGATCAGCAGGAGGTCAGCTAGGATTGCTTACTGCGGGCTGTTTGCTC
TCTCTCTGATCGTTTCGTGGATTCTTCGTGAAGTCGCCGCTCCGCTCATG
GAGAAGCTCCCTTGGATTAATCATTTTCATAAGACACCTAGCAGGGAGTG
GTTTGAAACTGATGCTGTGCTGCGAGTTAGCTTGGGAAATTTTCTCTTTT
TCACTATTTTGTCAATTTTAATGGTTGGTGTGAAAAATCAGAAAGATCCC
CGTGATAGCTTGCACCATGGTGGATGGATGATGAAAATTATTTGTTGGTG
CCTTCTGGTGATCTTTATGTTTTTCCTTCCAAATGAGATTGTCAGCTTCT
ATGAGTCAATATCAAAGTTTGGCTCGGGTTTGTTTCTTCTTGTTCAAGTT
GTCCTTTTATTGGACTTTGTTCACAGATGGAATGAGACGTGGGTTGGATA
TGATGAGCAGTTCTGGTATGTTGCCCTATT
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