FC930112

Overview
NameFC930112
Unique NameFC930112
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: Y1534_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 5.353e-68
Identity = 116/211 (54.98%), Postives = 143/211 (67.77%), Query Frame = 1
Query:    1 IEEEAGGVGKPIVKPFSAVVTNGTMDIRLYWAGKGTTEIPERGVYGPLISAISLH---NPDFEGSSGISXXXXXXXXXXXXXXXXXXXXXXWWK-GCFRPKYTSERELRGLDLQTGSFTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTAL 621
            I +EA  VG  ++K F   + +G ++IRLYWAG+GTT IP+  VYGPLISAIS+    NP     +G+S                       WK G  R K   E++ + L+L   SF+LRQIK ATN+FD AN+IGEGGFGPVYKG L DGT+IAVKQLS  SKQGNREF+NEIG ISAL HP+LVKLYGCC+EG QLLL+YE++EN +L
Sbjct:  497 IAKEAKDVGNVVIKTFPVEIKDGKLEIRLYWAGRGTTVIPKERVYGPLISAISVDSSVNPS--PRNGMSTGTLHTLVVILSIFIVFLVFGTLWKKGYLRSKSQMEKDFKSLELMIASFSLRQIKIATNNFDSANRIGEGGFGPVYKGKLFDGTIIAVKQLSTGSKQGNREFLNEIGMISALHHPNLVKLYGCCVEGGQLLLVYEFVENNSL 705          

HSP 2 Score: 60.4622 bits (145), Expect = 5.353e-68
Identity = 26/35 (74.29%), Postives = 31/35 (88.57%), Query Frame = 3
Query:  612 HSLARALFGPEEHRLKLDWPXRHNICIGIARGLAY 716
            +SLARALFGP+E +L+LDWP R  ICIG+ARGLAY
Sbjct:  703 NSLARALFGPQETQLRLDWPTRRKICIGVARGLAY 737          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 9.158e-61
Identity = 128/210 (60.95%), Postives = 149/210 (70.95%), Query Frame = 1
Query:    1 IEEEAGGVGKPIVKPFSAVVTNGTMDIRLYWAGKGTTEIPERGVYGPLISAISLHNPDFEGS---SGISXXXXXXXXXXXXXXXXXXXXXXWWKGCFRPKYTSERELRGLDLQTGSFTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTAL 621
            I+E A G GKPI+K F   VT+ T+ I L WAGKGTT IP RGVYGP+ISAIS+  P+F+                               +WK   R K   ++ELRGLDLQTG+FTLRQIKAAT++FDV  KIGEGGFG VYKG L++G LIAVKQLSAKS+QGNREFVNEIG ISALQHP+LVKLYGCC+EGNQL+L+YEYLEN  L
Sbjct:  552 IQEAARGSGKPIIKSFLVNVTDHTLKIGLRWAGKGTTGIPIRGVYGPMISAISVE-PNFKPPVYYDTKDIILKVGVPVAAATLLLFIIVGVFWKKR-RDKNDIDKELRGLDLQTGTFTLRQIKAATDNFDVTRKIGEGGFGSVYKGELSEGKLIAVKQLSAKSRQGNREFVNEIGMISALQHPNLVKLYGCCVEGNQLILVYEYLENNCL 759          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: Y5343_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.752e-60
Identity = 127/212 (59.91%), Postives = 145/212 (68.40%), Query Frame = 1
Query:    1 IEEEAGGVGKPIVKPFSAVVTNG-TMDIRLYWAGKGTTEIPERGVYGPLISAISLHNPDFEGSSG---ISXXXXXXXXXXXXXXXXXXXXXXWWKGCFRPKYTSERE-LRGLDLQTGSFTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTAL 621
            I E AGGVGKP ++    V  NG T++I L W GKGT  IP RGVYGPLISAI++  P+F+  +G    +                         G    K   E E LRGLDLQTGSFTL+QIK ATN+FD  NKIGEGGFGPVYKG+LADG  IAVKQLS+KSKQGNREFV EIG ISALQHP+LVKLYGCCIEG +LLL+YEYLEN +L
Sbjct:  540 IAERAGGVGKPFIRQIDGVQVNGSTLEIHLQWTGKGTNVIPTRGVYGPLISAITI-TPNFKVDTGKPLSNGAVAGIVIAACAVFGLLVLVILRLTGYLGGKEVDENEELRGLDLQTGSFTLKQIKRATNNFDPENKIGEGGFGPVYKGVLADGMTIAVKQLSSKSKQGNREFVTEIGMISALQHPNLVKLYGCCIEGKELLLVYEYLENNSL 750          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: Y5344_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=1 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 8.571e-59
Identity = 126/212 (59.43%), Postives = 145/212 (68.40%), Query Frame = 1
Query:    1 IEEEAGGVGKPIVKPFSAVVTNG-TMDIRLYWAGKGTTEIPERGVYGPLISAISLHNPDFEGSSG---ISXXXXXXXXXXXXXXXXXXXXXXWWKGCFRPKYTSERE-LRGLDLQTGSFTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTAL 621
            I + AGGVGKP ++    V  NG T++I L W GKGT  IP RGVYGPLISAI++  P+F+  +G    +                         G    K   E E LRGLDLQTGSFTL+QIK ATN+FD  NKIGEGGFGPVYKG+LADG  IAVKQLS+KSKQGNREFV EIG ISALQHP+LVKLYGCCIEG +LLL+YEYLEN +L
Sbjct:  538 IAQRAGGVGKPFLRQVDEVQVNGSTLEIHLKWTGKGTNVIPTRGVYGPLISAITV-TPNFKVDTGKPLSNGVVAGIVIAACVAFGLLVLVILRLTGYLGGKEVDENEELRGLDLQTGSFTLKQIKRATNNFDPENKIGEGGFGPVYKGVLADGMTIAVKQLSSKSKQGNREFVTEIGMISALQHPNLVKLYGCCIEGKELLLVYEYLENNSL 748          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: RKF1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.488e-52
Identity = 110/210 (52.38%), Postives = 137/210 (65.24%), Query Frame = 1
Query:    1 IEEEAGGVGKPIVKPFSAVVTNGTMDIRLYWAGKGTTEIPERGVYGPLISAISL---HNPDFEGSSGISXXXXXXXXXXXXXXXXXXXXXXWWKGCFRPKYTSERELRGLDLQTGSFTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTAL 621
            I +EA G   PI+KP +A VTN  + IRL WAGKGTT IP RGVYGP+ISAIS+     P     +G+S                      W  GC        ++    +L +G+FTLRQIK AT+ F+  NKIGEGGFG V+KG+LADG ++AVKQLS+KS+QGNREF+NEIG IS LQHP+LVKL+G C+E  QLLL YEY+EN +L
Sbjct:  553 IMDEAKGAQTPIIKPLTAYVTNHFLTIRLSWAGKGTTRIPTRGVYGPIISAISIVSDSKPCERPKTGMSPGAYIAIGIGAPCLIIFILGFLWICGCLPRCGRQRKDPYEEELPSGTFTLRQIKFATDDFNPTNKIGEGGFGAVFKGVLADGRVVAVKQLSSKSRQGNREFLNEIGAISCLQHPNLVKLHGFCVERAQLLLAYEYMENNSL 762          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: Y5614_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 3.744e-38
Identity = 92/228 (40.35%), Postives = 127/228 (55.70%), Query Frame = 1
Query:   28 KPIVKPFSAVVTNGTMDIRLYWAGKGTTEIPERGVYGPLISAISLHNPDF----------EGSSGISXXXXXXXXXXXXXXXXXXXXXXWWKGCFRPKYTSERELRGLDLQTGSFTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTALLELCLVLKSIG*SWIGQXDI 681
            + + + + A V+   ++I L+WAGKGT  IP +G YGPLISA+    PDF          +G S                           K   R +YT + E+  +D++  +FT  ++K+AT  FD +NK+GEGGFGPVYKG L DG  +AVK LS  S+QG  +FV EI  ISA+QH +LVKLYGCC EG   LL+YEYL N +L +     K++   W  + +I
Sbjct:  570 RAVQREYKANVSQNHLEIHLFWAGKGTCCIPIQGAYGPLISAVGA-TPDFTPTVGNRPPSKGKSMTGTIVGVIVGVGLLSIISGVVIFIIRKR--RKRYTDDEEILSMDVKPYTFTYSELKSATQDFDPSNKLGEGGFGPVYKGKLNDGREVAVKLLSVGSRQGKGQFVAEIVAISAVQHRNLVKLYGCCYEGEHRLLVYEYLPNGSLDQALFGEKTLHLDWSTRYEI 794          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: Y1561_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.089e-37
Identity = 90/228 (39.47%), Postives = 128/228 (56.14%), Query Frame = 1
Query:   28 KPIVKPFSAVVTNGTMDIRLYWAGKGTTEIPERGVYGPLISAISLHNPDF----------EGSSGISXXXXXXXXXXXXXXXXXXXXXXWWKGCFRPKYTSERELRGLDLQTGSFTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTALLELCLVLKSIG*SWIGQXDI 681
            + + + + A V+   +++ L+WAGKGT  IP +G YGPLISA+S   PDF          +G +                           K   R +YT + EL G+D++   FT  ++K+AT  FD +NK+GEGGFGPVYKG L DG ++AVK LS  S+QG  +FV EI  IS++ H +LVKLYGCC EG   +L+YEYL N +L +     K++   W  + +I
Sbjct:  571 RAVQRVYKANVSENHLEVHLFWAGKGTCCIPIQGAYGPLISAVSA-TPDFTPTVANKPPSKGKNRTGTIVGVIVGVGLLSILAGVVMFTIRKR--RKRYTDDEELLGMDVKPYIFTYSELKSATQDFDPSNKLGEGGFGPVYKGNLNDGRVVAVKLLSVGSRQGKGQFVAEIVAISSVLHRNLVKLYGCCFEGEHRMLVYEYLPNGSLDQALFGDKTLHLDWSTRYEI 795          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: SRK6_BRAOE (Putative serine/threonine-protein kinase receptor OS=Brassica oleracea var. acephala GN=SRK6 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.103e-25
Identity = 56/113 (49.56%), Postives = 76/113 (67.26%), Query Frame = 1
Query:  295 TSERELRGL----DLQTGSFTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTAL 621
            +S+RE  G     +L+     +  +  AT +F   NK+G+GGFG VYKG L DG  IAVK+LS  S QG  EF+NE+  I+ LQH +LV++ GCCIEG++ +LIYEYLEN +L
Sbjct:  497 SSKREFSGEYKFEELELPLIEMETVVKATENFSSCNKLGQGGFGIVYKGRLLDGKEIAVKRLSKTSVQGTDEFMNEVTLIARLQHINLVQVLGCCIEGDEKMLIYEYLENLSL 609          

HSP 2 Score: 30.4166 bits (67), Expect = 1.103e-25
Identity = 17/34 (50.00%), Postives = 21/34 (61.76%), Query Frame = 3
Query:  615 SLARALFGPEEHRLKLDWPXRHNICIGIARGLAY 716
            SL   LFG +  R KL+W  R +I  G+ARGL Y
Sbjct:  608 SLDSYLFG-KTRRSKLNWNERFDITNGVARGLLY 640          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: CRK27_ARATH (Cysteine-rich receptor-like protein kinase 27 OS=Arabidopsis thaliana GN=CRK27 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 2.442e-25
Identity = 54/111 (48.65%), Postives = 72/111 (64.86%), Query Frame = 1
Query:  289 KYTSERELRGLDLQTGSFTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTAL 621
            K  +E E    D  +  F    I+ AT+ F + NKIGEGGFG VYKG L DG  IAVK+LS  S QGN EF  E+  ++ LQH +LVKL+G  I+ ++ LL+YE++ NT+L
Sbjct:  306 KENAENEFESTD--SLHFDFETIRVATDDFSLTNKIGEGGFGVVYKGHLPDGLEIAVKRLSIHSGQGNAEFKTEVLLMTKLQHKNLVKLFGFSIKESERLLVYEFIPNTSL 414          

HSP 2 Score: 36.5798 bits (83), Expect = 2.442e-25
Identity = 17/34 (50.00%), Postives = 24/34 (70.59%), Query Frame = 3
Query:  615 SLARALFGPEEHRLKLDWPXRHNICIGIARGLAY 716
            SL R LF P + + +LDW  R+NI +G++RGL Y
Sbjct:  413 SLDRFLFDPIKQK-QLDWEKRYNIIVGVSRGLLY 445          
BLAST of FC930112 vs. ExPASy Swiss-Prot
Match: CRK21_ARATH (Cysteine-rich receptor-like protein kinase 21 OS=Arabidopsis thaliana GN=CRK21 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.378e-25
Identity = 46/94 (48.94%), Postives = 65/94 (69.15%), Query Frame = 1
Query:  340 FTLRQIKAATNHFDVANKIGEGGFGPVYKGLLADGTLIAVKQLSAKSKQGNREFVNEIGTISALQHPHLVKLYGCCIEGNQLLLIYEYLENTAL 621
            F  R IKAAT++F  +NK+G GGFG VYKG+  +GT +A K+LS  S QG  EF NE+  ++ LQH +LV L G  +EG + +L+YE++ N +L
Sbjct:  351 FDFRAIKAATSNFHKSNKLGHGGFGAVYKGMFPNGTEVAAKRLSKPSDQGEPEFKNEVLLVARLQHKNLVGLLGFSVEGEEKILVYEFVPNKSL 444          

HSP 2 Score: 38.5058 bits (88), Expect = 5.378e-25
Identity = 19/34 (55.88%), Postives = 23/34 (67.65%), Query Frame = 3
Query:  615 SLARALFGPEEHRLKLDWPXRHNICIGIARGLAY 716
            SL   LF P + R++LDWP RHNI  GI RG+ Y
Sbjct:  443 SLDHFLFDPIK-RVQLDWPRRHNIIEGITRGILY 475          
The following BLAST results are available for this feature:
BLAST of FC930112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
Y1534_ARATH5.353e-6854.98Probable LRR receptor-like serine/threonine-protei... [more]
Y1765_ARATH9.158e-6160.95Probable LRR receptor-like serine/threonine-protei... [more]
Y5343_ARATH7.752e-6059.91Probable LRR receptor-like serine/threonine-protei... [more]
Y5344_ARATH8.571e-5959.43Probable LRR receptor-like serine/threonine-protei... [more]
RKF1_ARATH3.488e-5252.38Probable LRR receptor-like serine/threonine-protei... [more]
Y5614_ARATH3.744e-3840.35Probable LRR receptor-like serine/threonine-protei... [more]
Y1561_ARATH1.089e-3739.47Probable LRR receptor-like serine/threonine-protei... [more]
SRK6_BRAOE1.103e-2549.56Putative serine/threonine-protein kinase receptor ... [more]
CRK27_ARATH2.442e-2548.65Cysteine-rich receptor-like protein kinase 27 OS=A... [more]
CRK21_ARATH5.378e-2548.94Cysteine-rich receptor-like protein kinase 21 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC34003H08EF PostHarvC1 Citrus clementina cDNA clone C34003H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930112 ID=FC930112; Name=FC930112; organism=Citrus clementina; type=EST; length=716bp
ATTGAGGAGGAAGCTGGTGGAGTTGGTAAACCAATTGTGAAACCATTTTC
TGCTGTCGTGACCAATGGGACCATGGATATCCGTCTCTATTGGGCAGGGA
AAGGGACAACTGAAATTCCTGAGAGAGGAGTTTATGGTCCTCTCATATCG
GCTATTTCTCTTCATAACCCTGATTTCGAAGGAAGCAGTGGCATATCAGT
AGGCACCGTGCTCGGAATTGTAGCGGCTGCAGCAGTTGTGATAATCCTAG
TTGTGGGTATCCTTTGGTGGAAGGGCTGTTTTAGACCAAAATATACATCG
GAACGAGAGCTGAGGGGTCTAGACTTGCAAACTGGTTCTTTTACCTTGAG
GCAAATTAAAGCTGCCACAAACCACTTTGATGTTGCTAACAAGATTGGTG
AAGGTGGTTTTGGCCCTGTTTACAAGGGCCTTTTGGCAGATGGCACTCTA
ATTGCTGTCAAGCAGCTTTCTGCCAAATCAAAGCAAGGAAATAGAGAGTT
CGTTAATGAGATTGGCACGATTTCTGCTTTGCAACACCCTCATCTTGTAA
AGCTTTATGGATGTTGCATTGAAGGAAATCAATTGTTATTGATATACGAG
TACTTGGAAAACACAGCCTTGCTAGAGCTTTGTTTGGTCCTGAAGAGCAT
CGGTTGAAGTTGGATTGGCCAANCAGACATAATATTTGCATCGGTATAGC
TAGAGGTTTAGCTTAT
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