FC930148

Overview
NameFC930148
Unique NameFC930148
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length783
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7853 contig Ccv1_Contig7853:187..969. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC930148 vs. ExPASy Swiss-Prot
Match: MYBJ_DICDI (Myb-like protein J OS=Dictyostelium discoideum GN=mybJ PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.336e-13
Identity = 41/92 (44.57%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:  439 SNRRCERKKGVPWTKEEHRLFLIGLQKLGKGDWRGIARNYVMSRTPTQVASHAQKYFIRQSNATRRKRRSSLFDMVADDMATDTHWCQKSNN 714
            + ++   K+G  WTKEEH  FL G+Q  GKG W+ IA+ +V +RTPTQ+ SHAQKY++RQ   T+ KR  S+ D+   D+  D       NN
Sbjct:  369 TGKKTSLKQG--WTKEEHIRFLNGIQIHGKGAWKEIAQ-FVGTRTPTQIQSHAQKYYLRQKQETKNKR--SIHDLSLQDLIDDNLNNSNKNN 455
The following BLAST results are available for this feature:
BLAST of FC930148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MYBJ_DICDI8.336e-1344.57Myb-like protein J OS=Dictyostelium discoideum GN=... [more]
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Properties
Property NameValue
Genbank descriptionC34004C09EF PostHarvC1 Citrus clementina cDNA clone C34004C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930148 ID=FC930148; Name=FC930148; organism=Citrus clementina; type=EST; length=783bp
GTCCATGCAAAGCAATATCACACGCACACCCTCTCTACCCCCTCAAAATT
TCCAAGATAATTATAATTTAAATAGTCAATTTAATTAATTTATTAGAGAT
ATCCGAATTTTATCGAGTCGCGGCAGCGGTAACCGGCGATGACGCGGCGC
TGCTCGCATTGCAGCAACAACGGGCACAACTCGCGAACGTGTCCCACGCG
GGGCGGCGGCTCGTCGCCGGGCGTGGGCGGCCTGAAGTTGTTTGGCGTCC
GGCTTACGGATGGCTCGATAATCAAGAAGAGCGCGAGCATGGGGAACTTA
TCGGCGTTGCACTACCATAGCTCCTCGTCGGCAGCCGCTTCGCCGAATCC
TGACTCCCCGTTATCGGATCACGTGCGTGACCCGACTCACTTGACCGAAG
GTTACTTGTCGGATGACCCAGCGCACGGGTCTGGTTCATCGAATCGGCGT
TGCGAGAGAAAGAAAGGTGTCCCATGGACAAAAGAGGAGCATCGCCTGTT
TCTAATTGGCCTTCAGAAATTAGGGAAGGGAGACTGGCGTGGTATAGCAC
GAAATTATGTCATGTCCAGGACTCCAACCCAGGTGGCAAGTCATGCTCAG
AAGTATTTTATCCGGCAGAGTAATGCTACTCGAAGAAAGAGGCGCTCCAG
TCTTTTTGACATGGTTGCGGATGATATGGCCACAGATACCCACTGGTGCC
AGAAGAGCAATAATGCTCCATCTCCCTCTGCAGAGATCTGACATACAGCT
CACACCTCTCTAATCTTCTCTGATACCGATTGA
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