FC930149

Overview
NameFC930149
Unique NameFC930149
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10253 contig Ccv1_Contig10253:6..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930149 vs. ExPASy Swiss-Prot
Match: NGDN_BOVIN (Neuroguidin OS=Bos taurus GN=NGDN PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.701e-23
Identity = 61/158 (38.61%), Postives = 89/158 (56.33%), Query Frame = 1
Query:  202 ERVKKEAPQLAALLKEMKEGLDKLRSKVQTLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLVSKTDMXTED 675
            E ++ + P   ALLK ++E +  + ++VQTL  KV+   YPT  G+S LE K  LLL Y   + + +L KA G S++ HP V  LVEIR  LEK+RP+D+KL+YQI KL    V G+  E                D L+++P+P  ++SK     E+
Sbjct:    5 EVLESDLPNAVALLKNLQEQVMAVTAQVQTLTKKVQAKAYPTEKGLSLLEVKDQLLLMYLMDLSHLILDKASGGSLQGHPAVLRLVEIRTVLEKLRPLDQKLKYQIDKLVKTAVTGSLSE---------------NDPLRFKPHPSNMMSKLSSEDEE 147          
BLAST of FC930149 vs. ExPASy Swiss-Prot
Match: NGDN_MOUSE (Neuroguidin OS=Mus musculus GN=Ngdn PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.519e-22
Identity = 58/158 (36.71%), Postives = 87/158 (55.06%), Query Frame = 1
Query:  202 ERVKKEAPQLAALLKEMKEGLDKLRSKVQTLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLVSKTDMXTED 675
            E ++ +      LLK ++E +  + +++Q L TKV+   Y T  G+S+LE K  LLL Y   + + +L KA G S++ HP V  LVEIR  LEK+RP+D+KL+YQI KL    V G+  E                D L+++P+P  +VSK     E+
Sbjct:    5 EVLESDVSSSITLLKNLQEQVMAVTAQIQALTTKVRAGTYSTEKGLSFLEVKDQLLLMYLMDLSHLILDKASGASLQGHPAVLRLVEIRTVLEKLRPLDQKLKYQIDKLVKTAVTGSLSE---------------NDPLRFKPHPSNMVSKLSSEDEE 147          
BLAST of FC930149 vs. ExPASy Swiss-Prot
Match: NGDN_HUMAN (Neuroguidin OS=Homo sapiens GN=NGDN PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.208e-21
Identity = 56/156 (35.90%), Postives = 87/156 (55.77%), Query Frame = 1
Query:  208 VKKEAPQLAALLKEMKEGLDKLRSKVQTLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLVSKTDMXTED 675
            ++ + P    LLK ++E +  + ++V++L  KV+   YPT  G+S+LE K  LLL Y   + + +L KA G S++ H  V  LVEIR  LEK+RP+D+KL+YQI KL    V G+  E                D L+++P+P  ++SK     E+
Sbjct:    7 LESDLPSAVTLLKNLQEQVMAVTAQVKSLTQKVQAGAYPTEKGLSFLEVKDQLLLMYLMDLTHLILDKASGGSLQGHDAVLRLVEIRTVLEKLRPLDQKLKYQIDKLIKTAVTGSLSE---------------NDPLRFKPHPSNMMSKLSSEDEE 147          
BLAST of FC930149 vs. ExPASy Swiss-Prot
Match: NGDN_XENTR (Neuroguidin OS=Xenopus tropicalis GN=ngdn PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.969e-20
Identity = 56/151 (37.09%), Postives = 84/151 (55.63%), Query Frame = 1
Query:  202 ERVKKEAPQLAALLKEMKEGLDKLRSKVQTLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLVSK 654
            E + ++ P    L + +++ + K+ + VQ L  KV+   Y T  G+S+LE K  LLL Y Q + + +L K  G SI+ +P +  LVE+R  LEK+RPID+KL+YQI KL    V G+  E                D L+++PNP  L+SK
Sbjct:    6 EIILEDVPASVNLFRTLQDQVTKVTAHVQALTQKVRSGIYNTDKGLSFLELKDQLLLFYLQDLTHLMLEKTNGKSIKGNPGILRLVELRTVLEKMRPIDQKLKYQIDKLVRASVTGSLGE---------------NDPLRFKPNPQNLISK 141          
BLAST of FC930149 vs. ExPASy Swiss-Prot
Match: NGDN_DANRE (Neuroguidin OS=Danio rerio GN=ngdn PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.359e-19
Identity = 57/168 (33.93%), Postives = 91/168 (54.17%), Query Frame = 1
Query:  190 SISDERVKKEAPQLAALLKEMKEGLDKLRSKVQTLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLVSK---TDMXTEDGAG 684
            ++ ++ + ++ P    LL  + E +  + S V+ LI KV+   Y T  G+S+L+ ++ LLL Y Q I + +  K +G S++++  +  LV IR  LEK+RP+D+KL+YQI KL    V G+  E                D L +RPNP  LVSK   ++   +DG G
Sbjct:    5 AVGNDVIDRDLPTAVRLLNSLTEQIVSVTSHVRELIKKVREKAYQTSKGLSFLDLRYHLLLFYLQDITHLISLKTEGESLKDNSAIHRLVTIRTVLEKMRPLDQKLKYQIDKLVRTAVTGSLSE---------------NDPLHFRPNPQSLVSKLSESEDSDDDGVG 157          
BLAST of FC930149 vs. ExPASy Swiss-Prot
Match: NGDNB_XENLA (Neuroguidin-B (Fragment) OS=Xenopus laevis GN=ngdn-B PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.028e-19
Identity = 55/149 (36.91%), Postives = 83/149 (55.70%), Query Frame = 1
Query:  208 VKKEAPQLAALLKEMKEGLDKLRSKVQTLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLVSK 654
            + ++ P    L   +++ + K+ + VQ L  KV+ + Y T  G+S+LE K  LLL Y Q + + +L K  G SI+ +P +  LVE+R  LEK+RPID+KL+YQI KL    V G+  E                D L+++PNP  L+SK
Sbjct:    7 ILEDVPGSVNLFNTLQDQITKVTAHVQDLTQKVRSSIYNTDKGLSFLELKDQLLLFYLQDLTHLMLEKTNGKSIKGNPGILRLVELRTVLEKMRPIDQKLKYQIDKLVKAAVTGSLGE---------------NDPLRFKPNPQNLMSK 140          
BLAST of FC930149 vs. ExPASy Swiss-Prot
Match: NGDNA_XENLA (Neuroguidin-A OS=Xenopus laevis GN=ngdn-A PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.955e-19
Identity = 55/149 (36.91%), Postives = 82/149 (55.03%), Query Frame = 1
Query:  208 VKKEAPQLAALLKEMKEGLDKLRSKVQTLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLVSK 654
            + ++ P    L   +++ + K+ + VQ L  KV+   Y T  G+S+LE K  LLL Y Q + + +L K  G SI+ +P +  LVE+R  LEK+RPID+KL+YQI KL    V G+  E                D L+++PNP  L+SK
Sbjct:    8 ILEDVPGSVNLFNTLQDQITKVTAHVQDLTQKVRSGIYNTDKGLSFLELKDQLLLFYLQDLTHLMLEKTNGKSIKGNPGILRLVELRTVLEKMRPIDQKLKYQIDKLVKAAVTGSLGE---------------NDPLRFKPNPQNLMSK 141          
BLAST of FC930149 vs. ExPASy Swiss-Prot
Match: SAS10_RAT (Something about silencing protein 10 OS=Rattus norvegicus GN=Utp3 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.008e-14
Identity = 41/124 (33.06%), Postives = 74/124 (59.68%), Query Frame = 1
Query:  208 VKKEAPQLAALLKEMKEGLDKLRSKVQTLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSA 579
            ++KE+P+L  L++++K  L +++ +++ LI  V+    P   G  YL+ K+ L LNYC +I +YL+ KA+ +    HPV+  LV  R  + K+  +D+KL  +I+ L + + G    + +NP A
Sbjct:  215 LRKESPELLELIEDLKVKLTEVKDELEPLIQLVEKGVIPPGKGSQYLKTKYNLYLNYCANISFYLILKARRVPAHGHPVIERLVTYRNLINKLSVVDQKLSSEIRHLLTAKEGAGK-KDLNPKA 337          
BLAST of FC930149 vs. ExPASy Swiss-Prot
Match: SAS10_MOUSE (Something about silencing protein 10 OS=Mus musculus GN=Utp3 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.246e-14
Identity = 38/113 (33.63%), Postives = 70/113 (61.95%), Query Frame = 1
Query:  208 VKKEAPQLAALLKEMKEGLDKLRSKVQTLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVG 546
            +KKE+P+L  L+++++  L +++ +++ L+  V+    PT  G  YL+ K+ L LNYC +I +YL+ KA+ +    HPV+  LV  R  + K+  +D+KL  +I+ L + + G
Sbjct:  215 LKKESPELLELIEDLQAKLTEVKDELEPLLQLVEKGVIPTGRGSEYLKTKYNLYLNYCANISFYLILKARRVPAHGHPVIERLVTYRNLINKLSVVDQKLSSEIRHLLTAKDG 327          
BLAST of FC930149 vs. ExPASy Swiss-Prot
Match: SAS10_HUMAN (Something about silencing protein 10 OS=Homo sapiens GN=UTP3 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.456e-13
Identity = 36/111 (32.43%), Postives = 68/111 (61.26%), Query Frame = 1
Query:  208 VKKEAPQLAALLKEMKEGLDKLRSKVQTLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVR 540
            ++KE+P+L  L++++K  L +++ +++ L+  V+    P   G  YL  K+ L LNYC +I +YL+ KA+ +    HPV+  LV  R  + K+  +D+KL  +I+ L +++
Sbjct:  219 LRKESPELLELIEDLKVKLTEVKDELEPLLELVEQGIIPPGKGSQYLRTKYNLYLNYCSNISFYLILKARRVPAHGHPVIERLVTYRNLINKLSVVDQKLSSEIRHLLTLK 329          
The following BLAST results are available for this feature:
BLAST of FC930149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
NGDN_BOVIN7.701e-2338.61Neuroguidin OS=Bos taurus GN=NGDN PE=2 SV=1[more]
NGDN_MOUSE6.519e-2236.71Neuroguidin OS=Mus musculus GN=Ngdn PE=1 SV=1[more]
NGDN_HUMAN7.208e-2135.90Neuroguidin OS=Homo sapiens GN=NGDN PE=1 SV=1[more]
NGDN_XENTR7.969e-2037.09Neuroguidin OS=Xenopus tropicalis GN=ngdn PE=2 SV=... [more]
NGDN_DANRE1.359e-1933.93Neuroguidin OS=Danio rerio GN=ngdn PE=2 SV=1[more]
NGDNB_XENLA3.028e-1936.91Neuroguidin-B (Fragment) OS=Xenopus laevis GN=ngdn... [more]
NGDNA_XENLA3.955e-1936.91Neuroguidin-A OS=Xenopus laevis GN=ngdn-A PE=1 SV=... [more]
SAS10_RAT1.008e-1433.06Something about silencing protein 10 OS=Rattus nor... [more]
SAS10_MOUSE2.246e-1433.63Something about silencing protein 10 OS=Mus muscul... [more]
SAS10_HUMAN1.456e-1332.43Something about silencing protein 10 OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionC34004C10EF PostHarvC1 Citrus clementina cDNA clone C34004C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930149 ID=FC930149; Name=FC930149; organism=Citrus clementina; type=EST; length=721bp
GATCCAGTCTTCGTTCTTTGTTACTTCGGTGAGTAGCAAGCCGATGCGCT
AATTTCCATAAGAATTCCGTACAACTTAAACGTAACTCTATTTTATACGC
ATCTTAAAATTTACAAAAACTTAGCTGCAGAACGGCGAAGAGCTGGTGGT
TATTATTTATAAATCATGGAGGAGGCTACCGGCAACCACTCGATCTCTGA
CGAAAGAGTGAAGAAAGAAGCGCCTCAGTTGGCGGCGTTGTTAAAAGAAA
TGAAAGAAGGGTTGGATAAACTGAGGAGTAAAGTACAAACTCTAATTACA
AAGGTGAAAGGGAATAATTATCCGACAGTGGATGGAATTAGCTATCTTGA
AGCCAAGCACTTGCTGCTTCTTAATTACTGCCAATCAATTGTCTATTATT
TACTTCGTAAGGCTAAGGGTTTGTCGATTGAGGAACATCCTGTTGTTCGG
AGCCTTGTCGAAATTAGATTATTTTTAGAGAAGATTCGTCCGATTGACAG
GAAGCTTCAGTACCAAATTCAGAAGCTTACAAGTGTAAGGGTTGGTGGGA
ATGCAATAGAGCCAGTGAATCCAAGTGCAAATGAGTCGGGTGAGCCGCAA
AAGACGGAAGATTTATTGAAATATCGACCTAACCCAGACATGCTTGTCAG
CAAAACTGATATGANCACTGAGGATGGTGCTGGTGTGTATAAACCCCCAA
ATTTGCTCCTGCTTCATGGAT
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