FC930149
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930149 vs. ExPASy Swiss-Prot
Match: NGDN_BOVIN (Neuroguidin OS=Bos taurus GN=NGDN PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 7.701e-23 Identity = 61/158 (38.61%), Postives = 89/158 (56.33%), Query Frame = 1 Query: 202 ERVKKEAPQLAALLKEMKEGLDKLRSKVQTLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLVSKTDMXTED 675 E ++ + P ALLK ++E + + ++VQTL KV+ YPT G+S LE K LLL Y + + +L KA G S++ HP V LVEIR LEK+RP+D+KL+YQI KL V G+ E D L+++P+P ++SK E+ Sbjct: 5 EVLESDLPNAVALLKNLQEQVMAVTAQVQTLTKKVQAKAYPTEKGLSLLEVKDQLLLMYLMDLSHLILDKASGGSLQGHPAVLRLVEIRTVLEKLRPLDQKLKYQIDKLVKTAVTGSLSE---------------NDPLRFKPHPSNMMSKLSSEDEE 147
BLAST of FC930149 vs. ExPASy Swiss-Prot
Match: NGDN_MOUSE (Neuroguidin OS=Mus musculus GN=Ngdn PE=1 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.519e-22 Identity = 58/158 (36.71%), Postives = 87/158 (55.06%), Query Frame = 1 Query: 202 ERVKKEAPQLAALLKEMKEGLDKLRSKVQTLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLVSKTDMXTED 675 E ++ + LLK ++E + + +++Q L TKV+ Y T G+S+LE K LLL Y + + +L KA G S++ HP V LVEIR LEK+RP+D+KL+YQI KL V G+ E D L+++P+P +VSK E+ Sbjct: 5 EVLESDVSSSITLLKNLQEQVMAVTAQIQALTTKVRAGTYSTEKGLSFLEVKDQLLLMYLMDLSHLILDKASGASLQGHPAVLRLVEIRTVLEKLRPLDQKLKYQIDKLVKTAVTGSLSE---------------NDPLRFKPHPSNMVSKLSSEDEE 147
BLAST of FC930149 vs. ExPASy Swiss-Prot
Match: NGDN_HUMAN (Neuroguidin OS=Homo sapiens GN=NGDN PE=1 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 7.208e-21 Identity = 56/156 (35.90%), Postives = 87/156 (55.77%), Query Frame = 1 Query: 208 VKKEAPQLAALLKEMKEGLDKLRSKVQTLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLVSKTDMXTED 675 ++ + P LLK ++E + + ++V++L KV+ YPT G+S+LE K LLL Y + + +L KA G S++ H V LVEIR LEK+RP+D+KL+YQI KL V G+ E D L+++P+P ++SK E+ Sbjct: 7 LESDLPSAVTLLKNLQEQVMAVTAQVKSLTQKVQAGAYPTEKGLSFLEVKDQLLLMYLMDLTHLILDKASGGSLQGHDAVLRLVEIRTVLEKLRPLDQKLKYQIDKLIKTAVTGSLSE---------------NDPLRFKPHPSNMMSKLSSEDEE 147
BLAST of FC930149 vs. ExPASy Swiss-Prot
Match: NGDN_XENTR (Neuroguidin OS=Xenopus tropicalis GN=ngdn PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.969e-20 Identity = 56/151 (37.09%), Postives = 84/151 (55.63%), Query Frame = 1 Query: 202 ERVKKEAPQLAALLKEMKEGLDKLRSKVQTLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLVSK 654 E + ++ P L + +++ + K+ + VQ L KV+ Y T G+S+LE K LLL Y Q + + +L K G SI+ +P + LVE+R LEK+RPID+KL+YQI KL V G+ E D L+++PNP L+SK Sbjct: 6 EIILEDVPASVNLFRTLQDQVTKVTAHVQALTQKVRSGIYNTDKGLSFLELKDQLLLFYLQDLTHLMLEKTNGKSIKGNPGILRLVELRTVLEKMRPIDQKLKYQIDKLVRASVTGSLGE---------------NDPLRFKPNPQNLISK 141
BLAST of FC930149 vs. ExPASy Swiss-Prot
Match: NGDN_DANRE (Neuroguidin OS=Danio rerio GN=ngdn PE=2 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.359e-19 Identity = 57/168 (33.93%), Postives = 91/168 (54.17%), Query Frame = 1 Query: 190 SISDERVKKEAPQLAALLKEMKEGLDKLRSKVQTLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLVSK---TDMXTEDGAG 684 ++ ++ + ++ P LL + E + + S V+ LI KV+ Y T G+S+L+ ++ LLL Y Q I + + K +G S++++ + LV IR LEK+RP+D+KL+YQI KL V G+ E D L +RPNP LVSK ++ +DG G Sbjct: 5 AVGNDVIDRDLPTAVRLLNSLTEQIVSVTSHVRELIKKVREKAYQTSKGLSFLDLRYHLLLFYLQDITHLISLKTEGESLKDNSAIHRLVTIRTVLEKMRPLDQKLKYQIDKLVRTAVTGSLSE---------------NDPLHFRPNPQSLVSKLSESEDSDDDGVG 157
BLAST of FC930149 vs. ExPASy Swiss-Prot
Match: NGDNB_XENLA (Neuroguidin-B (Fragment) OS=Xenopus laevis GN=ngdn-B PE=1 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.028e-19 Identity = 55/149 (36.91%), Postives = 83/149 (55.70%), Query Frame = 1 Query: 208 VKKEAPQLAALLKEMKEGLDKLRSKVQTLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLVSK 654 + ++ P L +++ + K+ + VQ L KV+ + Y T G+S+LE K LLL Y Q + + +L K G SI+ +P + LVE+R LEK+RPID+KL+YQI KL V G+ E D L+++PNP L+SK Sbjct: 7 ILEDVPGSVNLFNTLQDQITKVTAHVQDLTQKVRSSIYNTDKGLSFLELKDQLLLFYLQDLTHLMLEKTNGKSIKGNPGILRLVELRTVLEKMRPIDQKLKYQIDKLVKAAVTGSLGE---------------NDPLRFKPNPQNLMSK 140
BLAST of FC930149 vs. ExPASy Swiss-Prot
Match: NGDNA_XENLA (Neuroguidin-A OS=Xenopus laevis GN=ngdn-A PE=1 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.955e-19 Identity = 55/149 (36.91%), Postives = 82/149 (55.03%), Query Frame = 1 Query: 208 VKKEAPQLAALLKEMKEGLDKLRSKVQTLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLVSK 654 + ++ P L +++ + K+ + VQ L KV+ Y T G+S+LE K LLL Y Q + + +L K G SI+ +P + LVE+R LEK+RPID+KL+YQI KL V G+ E D L+++PNP L+SK Sbjct: 8 ILEDVPGSVNLFNTLQDQITKVTAHVQDLTQKVRSGIYNTDKGLSFLELKDQLLLFYLQDLTHLMLEKTNGKSIKGNPGILRLVELRTVLEKMRPIDQKLKYQIDKLVKAAVTGSLGE---------------NDPLRFKPNPQNLMSK 141
BLAST of FC930149 vs. ExPASy Swiss-Prot
Match: SAS10_RAT (Something about silencing protein 10 OS=Rattus norvegicus GN=Utp3 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.008e-14 Identity = 41/124 (33.06%), Postives = 74/124 (59.68%), Query Frame = 1 Query: 208 VKKEAPQLAALLKEMKEGLDKLRSKVQTLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSA 579 ++KE+P+L L++++K L +++ +++ LI V+ P G YL+ K+ L LNYC +I +YL+ KA+ + HPV+ LV R + K+ +D+KL +I+ L + + G + +NP A Sbjct: 215 LRKESPELLELIEDLKVKLTEVKDELEPLIQLVEKGVIPPGKGSQYLKTKYNLYLNYCANISFYLILKARRVPAHGHPVIERLVTYRNLINKLSVVDQKLSSEIRHLLTAKEGAGK-KDLNPKA 337
BLAST of FC930149 vs. ExPASy Swiss-Prot
Match: SAS10_MOUSE (Something about silencing protein 10 OS=Mus musculus GN=Utp3 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.246e-14 Identity = 38/113 (33.63%), Postives = 70/113 (61.95%), Query Frame = 1 Query: 208 VKKEAPQLAALLKEMKEGLDKLRSKVQTLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVG 546 +KKE+P+L L+++++ L +++ +++ L+ V+ PT G YL+ K+ L LNYC +I +YL+ KA+ + HPV+ LV R + K+ +D+KL +I+ L + + G Sbjct: 215 LKKESPELLELIEDLQAKLTEVKDELEPLLQLVEKGVIPTGRGSEYLKTKYNLYLNYCANISFYLILKARRVPAHGHPVIERLVTYRNLINKLSVVDQKLSSEIRHLLTAKDG 327
BLAST of FC930149 vs. ExPASy Swiss-Prot
Match: SAS10_HUMAN (Something about silencing protein 10 OS=Homo sapiens GN=UTP3 PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.456e-13 Identity = 36/111 (32.43%), Postives = 68/111 (61.26%), Query Frame = 1 Query: 208 VKKEAPQLAALLKEMKEGLDKLRSKVQTLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEEHPVVRSLVEIRLFLEKIRPIDRKLQYQIQKLTSVR 540 ++KE+P+L L++++K L +++ +++ L+ V+ P G YL K+ L LNYC +I +YL+ KA+ + HPV+ LV R + K+ +D+KL +I+ L +++ Sbjct: 219 LRKESPELLELIEDLKVKLTEVKDELEPLLELVEQGIIPPGKGSQYLRTKYNLYLNYCSNISFYLILKARRVPAHGHPVIERLVTYRNLINKLSVVDQKLSSEIRHLLTLK 329 The following BLAST results are available for this feature:
BLAST of FC930149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930149 ID=FC930149; Name=FC930149; organism=Citrus clementina; type=EST; length=721bpback to top |