FC930151

Overview
NameFC930151
Unique NameFC930151
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length573
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7082 contig Ccv1_Contig7082:86..659. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930151 vs. ExPASy Swiss-Prot
Match: ATP4_ARATH (ATP synthase subunit delta', mitochondrial OS=Arabidopsis thaliana GN=At5g47030 PE=1 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.558e-74
Identity = 119/142 (83.80%), Postives = 134/142 (94.37%), Query Frame = 2
Query:  137 PRPQTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSALT 562
            PRP TP+SIP+KLTVNFVLPY SEL+ KEVDMVI+PASTGQMGVLPGHVPTIAELKPG++SVH+G D KKYF+SSGFAF+HANSVADIIAVEAVP+D IDPS VQKGLAEF QKL+SATTDLEKAEAQIGV+VHSA+N+AL+
Sbjct:   61 PRPSTPSSIPTKLTVNFVLPYTSELTGKEVDMVIIPASTGQMGVLPGHVPTIAELKPGIMSVHEGTDVKKYFLSSGFAFLHANSVADIIAVEAVPLDHIDPSQVQKGLAEFQQKLASATTDLEKAEAQIGVEVHSAINAALS 202          

HSP 2 Score: 55.8398 bits (133), Expect = 1.558e-74
Identity = 24/39 (61.54%), Postives = 34/39 (87.18%), Query Frame = 3
Query:   18 SRAFSSQVPAAPAVDSTFVESWKKVNPNMEPPKTPSVYM 134
            +RAFS+++P+   +DSTFVE+WKKV PNM+PP+TPS +M
Sbjct:   23 TRAFSTELPST--LDSTFVEAWKKVAPNMDPPQTPSAFM 59          
BLAST of FC930151 vs. ExPASy Swiss-Prot
Match: ATP4_IPOBA (ATP synthase subunit delta', mitochondrial OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 5.879e-74
Identity = 118/142 (83.10%), Postives = 133/142 (93.66%), Query Frame = 2
Query:  137 PRPQTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSALT 562
            PRP TP+SIPSKLTVNFVLPY+SEL+ KEVDMVI+PA+TGQMGVLPGHV TIAELKPGV+SVH+GND  KYFVS GFAFIHANS ADIIAVEAVP+D+ID +LVQKGLAEF QKL++A+TD+EKAEAQIGVDVHSALN+ALT
Sbjct:   58 PRPATPSSIPSKLTVNFVLPYSSELAGKEVDMVIIPATTGQMGVLPGHVATIAELKPGVMSVHEGNDVSKYFVSGGFAFIHANSFADIIAVEAVPLDRIDANLVQKGLAEFTQKLNTASTDVEKAEAQIGVDVHSALNAALT 199          

HSP 2 Score: 59.3066 bits (142), Expect = 5.879e-74
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 3
Query:   21 RAFSSQVPAAPAVDSTFVESWKKVNPNMEPPKTPSVYM 134
            R FS+ +PA  A DSTFVE+WKK+ PN++PPKTPS YM
Sbjct:   19 RPFSTDLPAETAADSTFVEAWKKLIPNVDPPKTPSAYM 56          
BLAST of FC930151 vs. ExPASy Swiss-Prot
Match: ATP4_PEA (ATP synthase subunit delta', mitochondrial OS=Pisum sativum PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 3.131e-66
Identity = 111/141 (78.72%), Postives = 127/141 (90.07%), Query Frame = 2
Query:  140 RPQTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSALT 562
            RP  P++IP+KLTVNFVLPY+S+L+AKEVD VI+PA+TG+MGVLPGHV TIAELKPGVL+V +G DT KYFVSSGF FIHANSVADIIAVEAVP++Q+D  LVQKGL EF QKL+SATTDLEK EAQIG+DV SALNSALT
Sbjct:   56 RPPVPSTIPTKLTVNFVLPYSSQLAAKEVDSVIIPATTGEMGVLPGHVATIAELKPGVLTVQEGTDTTKYFVSSGFRFIHANSVADIIAVEAVPVNQLDRDLVQKGLQEFTQKLNSATTDLEKREAQIGIDVDSALNSALT 196          

HSP 2 Score: 50.447 bits (119), Expect = 3.131e-66
Identity = 22/44 (50.00%), Postives = 34/44 (77.27%), Query Frame = 3
Query:    3 SAVTRSRAFSSQVPAAPAVDSTFVESWKKVNPNMEPPKTPSVYM 134
            S  + +R FS+ V A PA +S+FVE+W+KV+PN++PPKTP  ++
Sbjct:   11 SRASATRRFSTDV-ATPATNSSFVEAWRKVSPNIDPPKTPLEFL 53          
BLAST of FC930151 vs. ExPASy Swiss-Prot
Match: ATPD_AGABI (ATP synthase subunit delta, mitochondrial OS=Agaricus bisporus GN=atpD PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.078e-21
Identity = 50/133 (37.59%), Postives = 82/133 (61.65%), Query Frame = 2
Query:  161 IPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL 559
            I  KL ++  LP+ +  S+++V  V +PA +G MG+L  HVP+I  L+PGV+ V + + ++K+FVS GFA +H N+   I  VEA P++      ++  L E N+  + + ++ +K EAQI  +V+ AL  AL
Sbjct:   28 ISDKLKLSLALPHKAIFSSQDVVQVNIPAESGDMGILSSHVPSIEPLRPGVVEVVEDSGSQKWFVSGGFATVHPNNRLTINVVEAAPLEDFSIEAIRANLQEANKVAAGSGSEADKMEAQIEAEVYEALQHAL 160          
BLAST of FC930151 vs. ExPASy Swiss-Prot
Match: ATPD_KLULA (ATP synthase subunit delta, mitochondrial OS=Kluyveromyces lactis GN=ATP16 PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.037e-20
Identity = 54/129 (41.86%), Postives = 81/129 (62.79%), Query Frame = 2
Query:  173 LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL 559
            L + F LP+ +  S   V  V +PA +GQ+G+L  HVPT+ +L PGV+ V +G+ +KK+FVS GFA +  +S   I +VEA P++   P  V+  LAE  + +SSA  ++  AEA I ++V  AL +AL
Sbjct:   31 LKLQFALPHQTLFSGTPVTQVNLPAKSGQIGILANHVPTVEQLVPGVVEVLEGSSSKKFFVSGGFATVQPDSTLAITSVEAFPLESFSPENVRSLLAEAQKNVSSA-DEVAAAEAAIQLEVLEALQAAL 158          
BLAST of FC930151 vs. ExPASy Swiss-Prot
Match: ATPD_DICDI (ATP synthase subunit delta, mitochondrial OS=Dictyostelium discoideum GN=atp5D PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.016e-20
Identity = 49/126 (38.89%), Postives = 77/126 (61.11%), Query Frame = 2
Query:  173 LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSV-HDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSAL 547
            LT + + P+ +    K+  +V +P + G  GV   HVP IAELKPGV+ + H+  D +K+F+S GFAF++ ++   I  +EAVPIDQ+D   V+ GLA + Q  + A  +  KA A IG++ +  +
Sbjct:   37 LTFSLLSPHQTIYKDKKAQLVTLPGAKGIFGVAKNHVPRIAELKPGVIQINHENGDLEKFFISGGFAFVNPDASCYINTIEAVPIDQLDAEEVKNGLARYTQLYNDAQEENAKAVALIGLETYQQM 162          
BLAST of FC930151 vs. ExPASy Swiss-Prot
Match: ATPD_ASHGO (ATP synthase subunit delta, mitochondrial OS=Ashbya gossypii GN=ATP16 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.146e-19
Identity = 53/129 (41.09%), Postives = 77/129 (59.69%), Query Frame = 2
Query:  173 LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL 559
            L +NF LP+ +  +   V  V +P  TGQ+G+L  HVP + +L PGV+ V +G+++KK+FVS GFA +  +S   I +VEA P+D      V+  LAE  QK + A      AEA I ++V  AL +AL
Sbjct:   30 LKLNFALPHETLFAGTAVKQVNLPVKTGQIGILANHVPIVEQLVPGVVEVLEGSESKKFFVSGGFATVQPDSTLSITSVEAFPLDSFSAENVRALLAE-AQKNAGAADSRVAAEASIQIEVLEALQAAL 157          
BLAST of FC930151 vs. ExPASy Swiss-Prot
Match: ATPD_YEAST (ATP synthase subunit delta, mitochondrial OS=Saccharomyces cerevisiae GN=ATP16 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.955e-19
Identity = 52/131 (39.69%), Postives = 80/131 (61.07%), Query Frame = 2
Query:  167 SKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL 559
            S L + F LP+ +  S  EV  V +PA +G++GVL  HVPT+ +L PGV+ V +G+++KK+F+S GFA +  +S   + A+EA P++      ++  LAE  + +SS+    E AEA I V+V   L S L
Sbjct:   30 SGLKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNLLAEAKKNVSSSDA-REAAEAAIQVEVLENLQSVL 159          
BLAST of FC930151 vs. ExPASy Swiss-Prot
Match: ATPD_BOVIN (ATP synthase subunit delta, mitochondrial OS=Bos taurus GN=ATP5D PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 6.289e-18
Identity = 49/139 (35.25%), Postives = 76/139 (54.68%), Query Frame = 2
Query:  146 QTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVH-DGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL 559
            Q P + P +++  F  P     ++  V  V VP  TG  G+L  HVPT+  L+PG++ VH +   T KYFVSSG   ++A+S   ++A EAV +D +D    +  L +   +L  A  +  +AE QI ++ + AL  AL
Sbjct:   29 QAPAAGPGQMSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEALVKAL 167          
BLAST of FC930151 vs. ExPASy Swiss-Prot
Match: ATPD_MOUSE (ATP synthase subunit delta, mitochondrial OS=Mus musculus GN=Atp5d PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.073e-17
Identity = 49/137 (35.77%), Postives = 75/137 (54.74%), Query Frame = 2
Query:  152 PTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVH-DGNDTKKYFVSSGFAFIHANSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALNSAL 559
            P + P +++  F  P      +  V  V VP  TG  G+L  HVPT+  L+PG++ VH +   T KYFVSSG   ++A+S   ++A EAV +D +D    +  L +   +LS A  +  +AE QI ++ + AL  AL
Sbjct:   31 PAAGPGQMSFTFASPTQVFFDSANVKQVDVPTLTGAFGILASHVPTLQVLRPGLVVVHTEDGTTTKYFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAARANLEKAQSELSGAADEAARAEIQIRIEANEALVKAL 167          
The following BLAST results are available for this feature:
BLAST of FC930151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
ATP4_ARATH1.558e-7483.80ATP synthase subunit delta', mitochondrial OS=Arab... [more]
ATP4_IPOBA5.879e-7483.10ATP synthase subunit delta', mitochondrial OS=Ipom... [more]
ATP4_PEA3.131e-6678.72ATP synthase subunit delta', mitochondrial OS=Pisu... [more]
ATPD_AGABI6.078e-2137.59ATP synthase subunit delta, mitochondrial OS=Agari... [more]
ATPD_KLULA1.037e-2041.86ATP synthase subunit delta, mitochondrial OS=Kluyv... [more]
ATPD_DICDI3.016e-2038.89ATP synthase subunit delta, mitochondrial OS=Dicty... [more]
ATPD_ASHGO1.146e-1941.09ATP synthase subunit delta, mitochondrial OS=Ashby... [more]
ATPD_YEAST1.955e-1939.69ATP synthase subunit delta, mitochondrial OS=Sacch... [more]
ATPD_BOVIN6.289e-1835.25ATP synthase subunit delta, mitochondrial OS=Bos t... [more]
ATPD_MOUSE1.073e-1735.77ATP synthase subunit delta, mitochondrial OS=Mus m... [more]

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Properties
Property NameValue
Genbank descriptionC34004C12EF PostHarvC1 Citrus clementina cDNA clone C34004C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930151 ID=FC930151; Name=FC930151; organism=Citrus clementina; type=EST; length=573bp
CCAGCGCGGTGACAAGGTCTCGCGCCTTCTCATCGCAGGTCCCAGCCGCG
CCCGCCGTTGATTCGACTTTCGTTGAGTCATGGAAGAAAGTGAATCCAAA
CATGGAGCCGCCAAAGACTCCATCGGTTTACATGACCCTCGCCCACAAAC
CCCCACTTCAATCCCCTCCAAGCTCACCGTCAACTTCGTCCTTCCCTACG
CCTCTGAGCTCTCCGCTAAGGAGGTCGATATGGTTATAGTTCCAGCATCA
ACTGGGCAAATGGGTGTTCTGCCTGGACATGTACCTACAATTGCAGAACT
AAAGCCTGGAGTCTTATCGGTTCATGATGGGAATGATACCAAGAAATACT
TTGTTAGCAGTGGGTTTGCATTTATCCATGCAAACTCTGTTGCTGACATA
ATTGCTGTTGAGGCTGTGCCAATCGACCAAATTGACCCCAGCTTGGTCCA
GAAGGGCCTTGCAGAGTTCAACCAGAAGCTCAGTTCAGCTACAACTGACC
TGGAGAAAGCTGAAGCTCAGATAGGTGTTGATGTTCACAGTGCACTCAAC
TCTGCTCTCACAGCTAATTTCTC
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