FC930152
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930152 vs. ExPASy Swiss-Prot
Match: GRWD1_DICDI (Glutamate-rich WD repeat-containing protein 1 OS=Dictyostelium discoideum GN=grwd1 PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 3.504e-31 Identity = 76/205 (37.07%), Postives = 105/205 (51.22%), Query Frame = 3 Query: 108 PTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATXXXXXXXXXXXXXXXXXXXXXXXXXTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHXDEGYAIDW 722 P KVW+ GVD LEE E L D TAY+ +H+ + WPCLSF ++D LG RN++P+T Y VAG+QA++ N + + K ++L K P LQL + H G VNRIR+M Q +I A+W+D V +W+ +HL AL ++ETVA +PL H EGYA+DW Sbjct: 68 PKKVWRAGVDPLEEDEVLDYDSTAYDMMHSMSVEWPCLSFHPIKDELGAQRNKYPHTMYLVAGTQADEAKNNKVIIMKA-------KQLHKTKHDDEDSDDDEDSDDDEESDDEDDEDKDVDPELQLAFINHNGAVNRIRSMDQQSNIVATWSDNRSVYIWNIANHLKAL-DNETVAPK------QTAPLHTISNHSIEGYALDW 258
BLAST of FC930152 vs. ExPASy Swiss-Prot
Match: GRWD1_HUMAN (Glutamate-rich WD repeat-containing protein 1 OS=Homo sapiens GN=GRWD1 PE=1 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 8.650e-22 Identity = 68/208 (32.69%), Postives = 94/208 (45.19%), Query Frame = 3 Query: 108 PTKVWQPGVDK-LEEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATXXXXXXXXXXXXXXXXXXXXXXXXXTPILQLRKVAHQGCVNRIRA--MSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHXDEGYAIDW 722 P +V+ PG L EGEEL D AY H G PCLSFDI+RD LG R E P T Y AG+QAE N + + ++ N+ G KP P L+L V H G +NR+R + + P + W++ G V+V+ R L + E + +A + P+ F GH EG+A+DW Sbjct: 29 PAQVYLPGRGPPLREGEELVMDEEAYVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLTLYLCAGTQAESAQSNRLMMLRMHNLHG-------TKP------PPSEGSDEEEEEEDEEDEEERKPQLELAMVPHYGGINRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVEEPQALAAFLRDEQAQMKPIFSFAGHMGEGFALDW 222
BLAST of FC930152 vs. ExPASy Swiss-Prot
Match: RRB1_SCHPO (Ribosome assembly protein rrb1 OS=Schizosaccharomyces pombe GN=rrb1 PE=1 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.607e-21 Identity = 67/211 (31.75%), Postives = 97/211 (45.97%), Query Frame = 3 Query: 108 PTKV-WQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATXXXXXXXXXXXXXXXXXXXXXXXXXTPILQLRKVAHQGCVNRIR-----AMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHXDEGYAIDW 722 P+K+ W PG K+ E+L DP+ Y LH + WP LSFDIL+D+LG R +P+ Y V GSQA + N + V K+S + + + N A+ PIL+ + ++ +G NR+R A S + AS+ +TG V +WD HL +L + SPL H EGYA+DW Sbjct: 70 PSKIPWLPG-GKINADEKLVADPSVYEMLHNIQVKWPFLSFDILQDSLGEERRAWPHQMYLVGGSQALDSNDNELTVMKLSQLYKTQHD--ENDDAS------------------DNSDVEEDPILEHKSISTKGACNRVRSARRPANSSKESLLASFHETGKVHIWDIAPHLRSLDSPGVMVSR-----KENSPLYTVNRHKTEGYALDW 254
BLAST of FC930152 vs. ExPASy Swiss-Prot
Match: GRWD1_MOUSE (Glutamate-rich WD repeat-containing protein 1 OS=Mus musculus GN=Grwd1 PE=2 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.249e-20 Identity = 66/208 (31.73%), Postives = 98/208 (47.12%), Query Frame = 3 Query: 108 PTKVWQPGVDK-LEEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATXXXXXXXXXXXXXXXXXXXXXXXXXTPILQLRKVAHQGCVNRIRA--MSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHXDEGYAIDW 722 P++V+ PG L EGEEL D AY H G PCLSFDI+RD LG R E P + Y AG+QAE N + + ++ N+ G R P++ + P L+L V H G +NR+R + + P + W++ G V+V+ R L + + + +A + P+ F GH EG+A+DW Sbjct: 29 PSQVYLPGRGPPLSEGEELVMDEEAYVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLSLYLCAGTQAESAQSNRLMMLRMHNLHGTRPS--PSEGS-----------DDDEEDEDEEDEEEQKPQLELAMVPHYGGINRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVDDPQALAIFLRDEQARIKPIFSFAGHMGEGFALDW 222
BLAST of FC930152 vs. ExPASy Swiss-Prot
Match: GRWD1_BOVIN (Glutamate-rich WD repeat-containing protein 1 OS=Bos taurus GN=GRWD1 PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.631e-20 Identity = 66/206 (32.04%), Postives = 94/206 (45.63%), Query Frame = 3 Query: 114 KVWQPGVDK-LEEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATXXXXXXXXXXXXXXXXXXXXXXXXXTPILQLRKVAHQGCVNRIRA--MSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHXDEGYAIDW 722 +V+ PG L EGEEL D AY H G PCLSFDI+RD LG R E P T Y AG+QAE N + + ++ N+ G + P P P L+L V H G +NR+R + + P + W++ G V+V+ R L + + + +A + P+ F GH EG+A+DW Sbjct: 31 QVYLPGRGPPLREGEELVMDEEAYVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLTLYLCAGTQAESSQSNRLMMLRMHNLHGTK----PPPP---------EGSDDEEEEDDEEDEEERKPQLELAMVPHYGGINRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVDDPQALATFLRDEQTRMKPIFAFSGHMGEGFALDW 222
BLAST of FC930152 vs. ExPASy Swiss-Prot
Match: GRWD1_RAT (Glutamate-rich WD repeat-containing protein 1 OS=Rattus norvegicus GN=Grwd1 PE=2 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.130e-20 Identity = 66/208 (31.73%), Postives = 98/208 (47.12%), Query Frame = 3 Query: 108 PTKVWQPGVDK-LEEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATXXXXXXXXXXXXXXXXXXXXXXXXXTPILQLRKVAHQGCVNRIRA--MSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHXDEGYAIDW 722 P++V+ PG L EGEEL D AY H G PCLSFDI+RD LG R E P + Y AG+QAE N + + ++ N+ G R P++ + P L+L V H G +NR+R + + P + W++ G V+V+ R L + + + +A + P+ F GH EG+A+DW Sbjct: 29 PSQVYLPGRGPPLGEGEELVMDEEAYVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLSLYLCAGTQAESAQSNRLMMLRMHNLHGTRPP--PSEGS------------DDEDDEDEEDEEERKPQLELAMVPHYGGINRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVDDPQALAIFLRDEQARVKPIFSFAGHMGEGFALDW 221 The following BLAST results are available for this feature:
BLAST of FC930152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930152 ID=FC930152; Name=FC930152; organism=Citrus clementina; type=EST; length=729bpback to top |