FC930152

Overview
NameFC930152
Unique NameFC930152
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7420 contig Ccv1_Contig7420:313..1041. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930152 vs. ExPASy Swiss-Prot
Match: GRWD1_DICDI (Glutamate-rich WD repeat-containing protein 1 OS=Dictyostelium discoideum GN=grwd1 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.504e-31
Identity = 76/205 (37.07%), Postives = 105/205 (51.22%), Query Frame = 3
Query:  108 PTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATXXXXXXXXXXXXXXXXXXXXXXXXXTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHXDEGYAIDW 722
            P KVW+ GVD LEE E L  D TAY+ +H+  + WPCLSF  ++D LG  RN++P+T Y VAG+QA++   N + + K        ++L   K                             P LQL  + H G VNRIR+M Q  +I A+W+D   V +W+  +HL AL ++ETVA          +PL     H  EGYA+DW
Sbjct:   68 PKKVWRAGVDPLEEDEVLDYDSTAYDMMHSMSVEWPCLSFHPIKDELGAQRNKYPHTMYLVAGTQADEAKNNKVIIMKA-------KQLHKTKHDDEDSDDDEDSDDDEESDDEDDEDKDVDPELQLAFINHNGAVNRIRSMDQQSNIVATWSDNRSVYIWNIANHLKAL-DNETVAPK------QTAPLHTISNHSIEGYALDW 258          
BLAST of FC930152 vs. ExPASy Swiss-Prot
Match: GRWD1_HUMAN (Glutamate-rich WD repeat-containing protein 1 OS=Homo sapiens GN=GRWD1 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.650e-22
Identity = 68/208 (32.69%), Postives = 94/208 (45.19%), Query Frame = 3
Query:  108 PTKVWQPGVDK-LEEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATXXXXXXXXXXXXXXXXXXXXXXXXXTPILQLRKVAHQGCVNRIRA--MSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHXDEGYAIDW 722
            P +V+ PG    L EGEEL  D  AY   H    G PCLSFDI+RD LG  R E P T Y  AG+QAE    N + + ++ N+ G        KP                            P L+L  V H G +NR+R   + + P +   W++ G V+V+  R  L  + E + +A     +     P+  F GH  EG+A+DW
Sbjct:   29 PAQVYLPGRGPPLREGEELVMDEEAYVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLTLYLCAGTQAESAQSNRLMMLRMHNLHG-------TKP------PPSEGSDEEEEEEDEEDEEERKPQLELAMVPHYGGINRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVEEPQALAAFLRDEQAQMKPIFSFAGHMGEGFALDW 222          
BLAST of FC930152 vs. ExPASy Swiss-Prot
Match: RRB1_SCHPO (Ribosome assembly protein rrb1 OS=Schizosaccharomyces pombe GN=rrb1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.607e-21
Identity = 67/211 (31.75%), Postives = 97/211 (45.97%), Query Frame = 3
Query:  108 PTKV-WQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATXXXXXXXXXXXXXXXXXXXXXXXXXTPILQLRKVAHQGCVNRIR-----AMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHXDEGYAIDW 722
            P+K+ W PG  K+   E+L  DP+ Y  LH   + WP LSFDIL+D+LG  R  +P+  Y V GSQA   + N + V K+S +   + +   N  A+                          PIL+ + ++ +G  NR+R     A S    + AS+ +TG V +WD   HL +L     +           SPL     H  EGYA+DW
Sbjct:   70 PSKIPWLPG-GKINADEKLVADPSVYEMLHNIQVKWPFLSFDILQDSLGEERRAWPHQMYLVGGSQALDSNDNELTVMKLSQLYKTQHD--ENDDAS------------------DNSDVEEDPILEHKSISTKGACNRVRSARRPANSSKESLLASFHETGKVHIWDIAPHLRSLDSPGVMVSR-----KENSPLYTVNRHKTEGYALDW 254          
BLAST of FC930152 vs. ExPASy Swiss-Prot
Match: GRWD1_MOUSE (Glutamate-rich WD repeat-containing protein 1 OS=Mus musculus GN=Grwd1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.249e-20
Identity = 66/208 (31.73%), Postives = 98/208 (47.12%), Query Frame = 3
Query:  108 PTKVWQPGVDK-LEEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATXXXXXXXXXXXXXXXXXXXXXXXXXTPILQLRKVAHQGCVNRIRA--MSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHXDEGYAIDW 722
            P++V+ PG    L EGEEL  D  AY   H    G PCLSFDI+RD LG  R E P + Y  AG+QAE    N + + ++ N+ G R    P++ +                           P L+L  V H G +NR+R   + + P +   W++ G V+V+  R  L  + + + +A     +     P+  F GH  EG+A+DW
Sbjct:   29 PSQVYLPGRGPPLSEGEELVMDEEAYVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLSLYLCAGTQAESAQSNRLMMLRMHNLHGTRPS--PSEGS-----------DDDEEDEDEEDEEEQKPQLELAMVPHYGGINRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVDDPQALAIFLRDEQARIKPIFSFAGHMGEGFALDW 222          
BLAST of FC930152 vs. ExPASy Swiss-Prot
Match: GRWD1_BOVIN (Glutamate-rich WD repeat-containing protein 1 OS=Bos taurus GN=GRWD1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.631e-20
Identity = 66/206 (32.04%), Postives = 94/206 (45.63%), Query Frame = 3
Query:  114 KVWQPGVDK-LEEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATXXXXXXXXXXXXXXXXXXXXXXXXXTPILQLRKVAHQGCVNRIRA--MSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHXDEGYAIDW 722
            +V+ PG    L EGEEL  D  AY   H    G PCLSFDI+RD LG  R E P T Y  AG+QAE    N + + ++ N+ G +    P  P                            P L+L  V H G +NR+R   + + P +   W++ G V+V+  R  L  + + + +A     +     P+  F GH  EG+A+DW
Sbjct:   31 QVYLPGRGPPLREGEELVMDEEAYVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLTLYLCAGTQAESSQSNRLMMLRMHNLHGTK----PPPP---------EGSDDEEEEDDEEDEEERKPQLELAMVPHYGGINRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVDDPQALATFLRDEQTRMKPIFAFSGHMGEGFALDW 222          
BLAST of FC930152 vs. ExPASy Swiss-Prot
Match: GRWD1_RAT (Glutamate-rich WD repeat-containing protein 1 OS=Rattus norvegicus GN=Grwd1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.130e-20
Identity = 66/208 (31.73%), Postives = 98/208 (47.12%), Query Frame = 3
Query:  108 PTKVWQPGVDK-LEEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATXXXXXXXXXXXXXXXXXXXXXXXXXTPILQLRKVAHQGCVNRIRA--MSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHXDEGYAIDW 722
            P++V+ PG    L EGEEL  D  AY   H    G PCLSFDI+RD LG  R E P + Y  AG+QAE    N + + ++ N+ G R    P++ +                           P L+L  V H G +NR+R   + + P +   W++ G V+V+  R  L  + + + +A     +     P+  F GH  EG+A+DW
Sbjct:   29 PSQVYLPGRGPPLGEGEELVMDEEAYVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLSLYLCAGTQAESAQSNRLMMLRMHNLHGTRPP--PSEGS------------DDEDDEDEEDEEERKPQLELAMVPHYGGINRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVDDPQALAIFLRDEQARVKPIFSFAGHMGEGFALDW 221          
The following BLAST results are available for this feature:
BLAST of FC930152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GRWD1_DICDI3.504e-3137.07Glutamate-rich WD repeat-containing protein 1 OS=D... [more]
GRWD1_HUMAN8.650e-2232.69Glutamate-rich WD repeat-containing protein 1 OS=H... [more]
RRB1_SCHPO5.607e-2131.75Ribosome assembly protein rrb1 OS=Schizosaccharomy... [more]
GRWD1_MOUSE1.249e-2031.73Glutamate-rich WD repeat-containing protein 1 OS=M... [more]
GRWD1_BOVIN1.631e-2032.04Glutamate-rich WD repeat-containing protein 1 OS=B... [more]
GRWD1_RAT2.130e-2031.73Glutamate-rich WD repeat-containing protein 1 OS=R... [more]
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Properties
Property NameValue
Genbank descriptionC34004D01EF PostHarvC1 Citrus clementina cDNA clone C34004D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930152 ID=FC930152; Name=FC930152; organism=Citrus clementina; type=EST; length=729bp
GAAGTGATAAAATGGTTCGCAGCATCAAGAACCCAAAGAAGGCCAAAAGA
AAGAACAAGGACTCAAAAAAAGGAAATGGGTCATCTTCGTCTTCAATTCC
AAGTTTACCAACAAAGGTGTGGCAACCAGGAGTTGACAAGTTAGAGGAAG
GAGAGGAGCTTCAGTGTGACCCTACTGCCTACAACTCCCTTCACGCCTTT
CACATTGGCTGGCCTTGTTTAAGCTTTGATATCTTGCGTGATACGTTGGG
TTTAGTGCGGAATGAGTTTCCATACACAGCTTATTTTGTTGCTGGGTCTC
AGGCAGAGAAACCTTCTTGGAACTCTATTGGAGTATTTAAAGTCTCTAAC
ATTTCTGGGAAGAGACGTGAATTAGTACCTAATAAACCTGCTACTGGTGA
TGAAGATGCGGACGGTGAAAGTAGTGACAGTGATGACGATAGTGACGATG
AGGAGGAAGGTGGTTCTGGGACACCAATTTTGCAGTTGCGCAAGGTAGCT
CATCAAGGATGTGTCAATCGTATACGTGCCATGTCACAAAATCCCCATAT
ATGTGCATCCTGGGCAGATACTGGTCATGTGCAGGTATGGGACTTCCGAT
CTCATCTAAATGCTTTAGCGGAATCAGAAACGGTAGCTGGCCATGGAGCT
CCTCAAGTTTTAAATCAGAGCCCACTAGTTAAGTTTGGCGGCCACNAAGA
TGAGGGCTATGCTATAGATTGGAAATCCG
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