FC930155

Overview
NameFC930155
Unique NameFC930155
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930155_ssr37 microsatellite FC930155_ssr37:37..54. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14467 contig Ccv1_Contig14467:1..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930155 vs. ExPASy Swiss-Prot
Match: CHAC2_DANRE (Cation transport regulator-like protein 2 OS=Danio rerio GN=chac2 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.558e-28
Identity = 73/178 (41.01%), Postives = 100/178 (56.18%), Query Frame = 3
Query:  180 WVFGYGSLVWNPGFEYDEKILGFIEDYRRVFDLTCIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHE--DDYIIELGNEVR 707
            WVFGYGSL+W   F Y++K +GF++ + R F     DHRG P  P R  TL +  E   WGVAY +  G E+E    EYL+ RE        V F+ + E  QP +   +++  + D   N  YLGPAPLE +A+QI  +VGP G N DYLF+L  A+  +  E  DD++  L   V+
Sbjct:    2 WVFGYGSLIWKVDFPYEDKRVGFVKGFSRRFWQGSTDHRGVPGKPGRVVTLIEDPEGCVWGVAYKLPSGQEQE--VKEYLDYREKGGYGVITVTFHPKDEQQQP-MQDTLLYIGSCD---NPNYLGPAPLETIAQQIVKSVGPSGKNTDYLFELADALRQLVPEDLDDHLFSLERLVK 173          
BLAST of FC930155 vs. ExPASy Swiss-Prot
Match: CHAC2_XENLA (Cation transport regulator-like protein 2 OS=Xenopus laevis GN=chac2 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.731e-28
Identity = 76/178 (42.70%), Postives = 100/178 (56.18%), Query Frame = 3
Query:  180 WVFGYGSLVWNPGFEYDEKILGFIEDYRRVFDLTCIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHE--DDYIIELGNEVR 707
            WVFGYGSL+W   F Y EK++G+I  Y R F     DHRG P  P R  TL +  E   WGVAY +  G E+E  A  YL+ RE      + V FY +    QP    V+++  T D   N  YLGPAPLE++A QI  AVGP G N +YLF+L  ++ ++  E  D+++  L   VR
Sbjct:    2 WVFGYGSLIWKVDFPYVEKLVGYIMCYSRRFWQGSTDHRGVPGKPGRVVTLVEDPEGCVWGVAYRLPEGKEEEVKA--YLDFREKGGYRTSTVVFYPKDPSIQP--FNVLLYIGTCD---NPNYLGPAPLEDIAEQILNAVGPSGRNTEYLFELANSLRNLVPEDADEHLFSLEKLVR 172          
BLAST of FC930155 vs. ExPASy Swiss-Prot
Match: CHAC2_CHICK (Cation transport regulator-like protein 2 OS=Gallus gallus GN=chac2 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.731e-28
Identity = 74/165 (44.85%), Postives = 92/165 (55.76%), Query Frame = 3
Query:  180 WVFGYGSLVWNPGFEYDEKILGFIEDYRRVFDLTCIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHED 674
            WVFGYGSL+W   F Y EK++G I  Y R F     DHRG P  P R  TL +  E   WGVAY +  G E E  A  YL+ RE      T V FY +    +P    V+++  T D   N  YLGPAPL+E+A QI  AVGP G N +YLF+L  +M ++  ED
Sbjct:    2 WVFGYGSLIWKVDFPYQEKMVGRIRGYSRRFWQGSTDHRGVPGKPGRVVTLVEDPEGCVWGVAYRLPAGQECEVKA--YLDFREKGGYRTTTVVFYPKDSSIKP--FDVLLYIGTRD---NPNYLGPAPLQEIAEQIIDAVGPSGRNTEYLFELANSMRNLVPED 159          
BLAST of FC930155 vs. ExPASy Swiss-Prot
Match: CHAC2_HUMAN (Cation transport regulator-like protein 2 OS=Homo sapiens GN=CHAC2 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.116e-26
Identity = 72/178 (40.45%), Postives = 100/178 (56.18%), Query Frame = 3
Query:  180 WVFGYGSLVWNPGFEYDEKILGFIEDYRRVFDLTCIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHE--DDYIIELGNEVR 707
            WVFGYGSL+W   F Y +K++G+I +Y R F     DHRG P  P R  TL +      WGVAY +  G E+E  A  YL+ RE      T V FY +   ++P    V+++  T D   N  YLGPAPLE++A QI  A GP G N +YLF+L  ++ ++  E  D+++  L   V+
Sbjct:    2 WVFGYGSLIWKVDFPYQDKLVGYITNYSRRFWQGSTDHRGVPGKPGRVVTLVEDPAGCVWGVAYRLPVGKEEEVKA--YLDFREKGGYRTTTVIFYPKDPTTKP--FSVLLYIGTCD---NPDYLGPAPLEDIAEQIFNAAGPSGRNTEYLFELANSIRNLVPEEADEHLFALEKLVK 172          
BLAST of FC930155 vs. ExPASy Swiss-Prot
Match: CHAC2_RAT (Cation transport regulator-like protein 2 OS=Rattus norvegicus GN=Chac2 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.458e-26
Identity = 69/165 (41.82%), Postives = 92/165 (55.76%), Query Frame = 3
Query:  180 WVFGYGSLVWNPGFEYDEKILGFIEDYRRVFDLTCIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHED 674
            WVFGYGSL+W   F Y +K++G+I +Y R F     DHRG P  P R  TL +      WGVAY +  G E+E     YL+ RE      T V FY +   ++P    V+++  T D   N  YLGPAPLE++A QI  A GP G N +YLF+L  ++  +  ED
Sbjct:    2 WVFGYGSLIWKVDFPYQDKLVGYITNYSRRFWQGSTDHRGVPGKPGRVVTLVEDPGGSVWGVAYKLPVGKEEE--VKTYLDFREKGGYRTTTVIFYPKDSTTKP--FSVLLYIGTCD---NPNYLGPAPLEDIAEQIFNAAGPSGRNTEYLFELADSIRKLVPED 159          
BLAST of FC930155 vs. ExPASy Swiss-Prot
Match: CHAC2_MOUSE (Cation transport regulator-like protein 2 OS=Mus musculus GN=Chac2 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.458e-26
Identity = 69/165 (41.82%), Postives = 92/165 (55.76%), Query Frame = 3
Query:  180 WVFGYGSLVWNPGFEYDEKILGFIEDYRRVFDLTCIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHED 674
            WVFGYGSL+W   F Y +K++G+I +Y R F     DHRG P  P R  TL +      WGVAY +  G E+E     YL+ RE      T V FY +   ++P    V+++  T D   N  YLGPAPLE++A QI  A GP G N +YLF+L  ++  +  ED
Sbjct:    2 WVFGYGSLIWKVDFPYQDKLVGYITNYSRRFWQGSTDHRGVPGKPGRVVTLVEDPGGSVWGVAYKLPVGKEEE--VKTYLDFREKGGYRTTTVIFYPKDSTTKP--FSVLLYIGTCD---NPNYLGPAPLEDIAEQIFNAAGPSGRNTEYLFELADSVRKLVPED 159          
BLAST of FC930155 vs. ExPASy Swiss-Prot
Match: CHAC1_MOUSE (Cation transport regulator-like protein 1 OS=Mus musculus GN=Chac1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.186e-24
Identity = 68/161 (42.24%), Postives = 87/161 (54.04%), Query Frame = 3
Query:  180 WVFGYGSLVWNPGFEYDEKILGFIEDYRRVFDLTCIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERREC---EYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAM 653
            W+FGYGSLVW P F Y +  +GF+  Y R F      HRG+ + P R  TL +  E   WGVAY VRG  E+   A++YL  RE     YD+K  V FY +  P QP     + + +TP    N  YLGPAP E +A QI    G  G+N +YL +L   M
Sbjct:   35 WIFGYGSLVWKPDFAYSDSRVGFVRGYSRRFWQGDTFHRGSDKMPGRVVTLLEDHEGCTWGVAYQVRG--EQVNEALKYLNVREAVLGGYDTKE-VTFYPQDTPDQPLT--ALAYVATP---QNPGYLGPAPEEVIATQILACRGFSGHNLEYLLRLADFM 187          
BLAST of FC930155 vs. ExPASy Swiss-Prot
Match: CHAC1_HUMAN (Cation transport regulator-like protein 1 OS=Homo sapiens GN=CHAC1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.509e-23
Identity = 67/161 (41.61%), Postives = 87/161 (54.04%), Query Frame = 3
Query:  180 WVFGYGSLVWNPGFEYDEKILGFIEDYRRVFDLTCIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERREC---EYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAM 653
            W+FGYGSLVW P F Y +  +GF+  Y R F      HRG+ + P R  TL +  E   WGVAY V+G  E+   A++YL  RE     YD+K  V FY +  P QP     + + +TP    N  YLGPAP E +A QI    G  G+N +YL +L   M
Sbjct:   34 WIFGYGSLVWRPDFAYSDSRVGFVRGYSRRFWQGDTFHRGSDKMPGRVVTLLEDHEGCTWGVAYQVQG--EQVSKALKYLNVREAVLGGYDTKE-VTFYPQDAPDQP--LKALAYVATP---QNPGYLGPAPEEAIATQILACRGFSGHNLEYLLRLADFM 186          
BLAST of FC930155 vs. ExPASy Swiss-Prot
Match: CHAC2_BOVIN (Cation transport regulator-like protein 2 OS=Bos taurus GN=CHAC2 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.574e-23
Identity = 67/165 (40.61%), Postives = 88/165 (53.33%), Query Frame = 3
Query:  180 WVFGYGSLVWNPGFEYDEKILGFIEDYRRVFDLTCIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHED 674
            WVFGYGSL+W   F Y +K++G+I  Y R F     DHRG P   +             WGVAY +  G E+E  A  YL+ RE      T V FY +   ++P    V+++  T D   N  YLGPAPLE++A QI  A GP G N +YLF+L  +M  +  ED
Sbjct:    2 WVFGYGSLIWKVDFPYQDKLVGYISGYSRRFWQGSTDHRGVPGKGS------------VWGVAYKLPVGKEEEVKA--YLDFREKGGYRTTTVIFYPKDSTTEP--FSVLLYIGTRD---NPNYLGPAPLEDIAEQIFNAAGPSGKNTEYLFELANSMRSLVPED 147          
BLAST of FC930155 vs. ExPASy Swiss-Prot
Match: CHAC1_DANRE (Cation transport regulator-like protein 1 OS=Danio rerio GN=chac1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.780e-23
Identity = 64/164 (39.02%), Postives = 87/164 (53.05%), Query Frame = 3
Query:  168 KMVFWVFGYGSLVWNPGFEYDEKILGFIEDYRRVFDLTCIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDS--KTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAM 653
            K   W+FGYGSLVW P F+Y    +G+I+ Y+R F      HRG  + P R  TL +  +   WGVA+ V G   +E  +++YL  RE          VDF+  G    P     +V+ +TPD   N  YLGPA  EE+A QIA   G  G+N +YL +L + M
Sbjct:   10 KSSLWIFGYGSLVWKPDFKYKRSKVGYIKGYKRRFWHGDNFHRGDDEMPGRVVTLIEEDDVCTWGVAFEVTGSQMEE--SLKYLNVREAVRGGYLTRAVDFFPRGTNQPP--VQALVYIATPD---NPIYLGPASTEEIASQIAVCKGNSGHNIEYLLRLAEFM 166          
The following BLAST results are available for this feature:
BLAST of FC930155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CHAC2_DANRE1.558e-2841.01Cation transport regulator-like protein 2 OS=Danio... [more]
CHAC2_XENLA7.731e-2842.70Cation transport regulator-like protein 2 OS=Xenop... [more]
CHAC2_CHICK7.731e-2844.85Cation transport regulator-like protein 2 OS=Gallu... [more]
CHAC2_HUMAN1.116e-2640.45Cation transport regulator-like protein 2 OS=Homo ... [more]
CHAC2_RAT1.458e-2641.82Cation transport regulator-like protein 2 OS=Rattu... [more]
CHAC2_MOUSE1.458e-2641.82Cation transport regulator-like protein 2 OS=Mus m... [more]
CHAC1_MOUSE5.186e-2442.24Cation transport regulator-like protein 1 OS=Mus m... [more]
CHAC1_HUMAN1.509e-2341.61Cation transport regulator-like protein 1 OS=Homo ... [more]
CHAC2_BOVIN2.574e-2340.61Cation transport regulator-like protein 2 OS=Bos t... [more]
CHAC1_DANRE9.780e-2339.02Cation transport regulator-like protein 1 OS=Danio... [more]

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Properties
Property NameValue
Genbank descriptionC34004D04EF PostHarvC1 Citrus clementina cDNA clone C34004D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930155 ID=FC930155; Name=FC930155; organism=Citrus clementina; type=EST; length=708bp
GGCTCGTGTCTCAATTGCACCCACACGAGAGACGGGGAGAGAGAGAGAGA
GAGAGGAAGCGAAGAGAAATAGAAAGAGAGAATACAGAATCCTAACCTTA
GGCGTTTTAGCTTGTTTCGTTTCCCTCTTTTGCTTCAAGTTTCTTCCTTT
CTCCCGCGATTTCCTTGAAAATGGTGTTCTGGGTTTTTGGGTATGGATCA
TTGGTGTGGAACCCAGGGTTTGAATATGATGAGAAAATTTTAGGCTTCAT
CGAGGACTACAGGCGCGTGTTTGATCTTACATGCATTGATCACAGGGGTA
CACCTCAACACCCGGCTAGAACTTGCACGCTGGAAAAATCTCAAGAAACC
ATTTGTTGGGGTGTTGCTTATTGTGTCCGAGGAGGTCCTGAAAAGGAAAG
ACTCGCTATGGAGTATTTGGAACGAAGAGAATGCGAGTACGACTCTAAGA
CCCTTGTAGACTTTTACAGGGAAGGGGAGCCTTCACAGCCGGCTCTAACT
GGGGTTATAGTTTTCACGTCTACTCCAGACAAAGTATCAAACAAGTATTA
TCTGGGGCCTGCTCCATTGGAGGAAATGGCTAGGCAAATTGCAACGGCTG
TCGGACCCTGTGGAAACAATAGAGACTACCTTTTCAAGTTGGAGAAGGCC
ATGTTTGATATTGGTCATGAGGACGACTACATAATAGAGCTGGGCAATGA
AGTGAGGA
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