FC930157

Overview
NameFC930157
Unique NameFC930157
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10263 contig Ccv1_Contig10263:3..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930157 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.059e-20
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 1
Query:  454 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQSR 603
            +IINDRETGRSRGFGFVTF+DEKSMRDAIEGMNGQ LDGRNITVNEAQSR
Sbjct:   36 KIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQSR 85          
BLAST of FC930157 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.631e-19
Identity = 45/50 (90.00%), Postives = 50/50 (100.00%), Query Frame = 1
Query:  454 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQSR 603
            +IINDRETGRSRGFGFVTF+DEKSM+DAIEGMNGQ+LDGR+ITVNEAQSR
Sbjct:   38 KIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSR 87          
BLAST of FC930157 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.631e-19
Identity = 45/50 (90.00%), Postives = 50/50 (100.00%), Query Frame = 1
Query:  454 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQSR 603
            +IINDRETGRSRGFGFVTF+DEKSM+DAIEGMNGQ+LDGR+ITVNEAQSR
Sbjct:   38 KIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSR 87          
BLAST of FC930157 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.861e-19
Identity = 44/50 (88.00%), Postives = 50/50 (100.00%), Query Frame = 1
Query:  454 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQSR 603
            +IINDRETGRSRGFGFVTF+DEK+M+DAIEGMNGQ+LDGR+ITVNEAQSR
Sbjct:   38 KIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87          
BLAST of FC930157 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.462e-17
Identity = 42/50 (84.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:  454 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQSR 603
            +IINDRETGRSRGFGFVTF+DEKSM+DAI+ MNG+ LDGR ITVNEAQSR
Sbjct:   36 KIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQSR 85          
BLAST of FC930157 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.164e-17
Identity = 42/50 (84.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:  454 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQSR 603
            +IINDRE+GRSRGFGFVTF+DEK+MRDAIE MNG+ LDGR ITVNEAQSR
Sbjct:   36 KIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85          
BLAST of FC930157 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.065e-16
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 1
Query:  454 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQSR 603
            +II DRETGRSRGFGFVTF  +++MR AIE MNGQ+LDGRNITVNEAQSR
Sbjct:   36 KIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSR 85          
BLAST of FC930157 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.765e-15
Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 1
Query:  454 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQSR 603
            ++I DRETGRSRGFGFVTF  E+SM DAIE MNG+ LDGRNITVN+AQSR
Sbjct:   38 KVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSR 87          
BLAST of FC930157 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.305e-15
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 1
Query:  454 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQSR 603
            ++I DRETGRSRGFGFVTF  E SM DAIE MNG+ LDGRNITVN+AQSR
Sbjct:   38 KVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQSR 87          
BLAST of FC930157 vs. ExPASy Swiss-Prot
Match: GRP1_SORBI (Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.134e-15
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 1
Query:  454 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQSR 603
            +II DRET RSRGFGFVTF  E++MR AIEGMNG+ LDGRNITVNEAQSR
Sbjct:   17 KIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQSR 66          
The following BLAST results are available for this feature:
BLAST of FC930157 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
GRP1_DAUCA4.059e-2094.00Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
GRP2_SINAL2.631e-1990.00Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... [more]
GRP1_SINAL2.631e-1990.00Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
GRP7_ARATH5.861e-1988.00Glycine-rich RNA-binding protein 7 OS=Arabidopsis ... [more]
GRP10_BRANA2.462e-1784.00Glycine-rich RNA-binding protein 10 OS=Brassica na... [more]
GRP8_ARATH7.164e-1784.00Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]
GRP_HORVU6.065e-1680.00Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
GRP2_SORBI1.765e-1578.00Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
GRPA_MAIZE2.305e-1578.00Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP1_SORBI5.134e-1580.00Glycine-rich RNA-binding protein 1 (Fragment) OS=S... [more]
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Properties
Property NameValue
Genbank descriptionC34004D06EF PostHarvC1 Citrus clementina cDNA clone C34004D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930157 ID=FC930157; Name=FC930157; organism=Citrus clementina; type=EST; length=666bp
GACCCGCAGCGGTGCTGTCTCCTAGATTTTTCTTGTAATTCCTTCTTAGT
CCCCATTTCAAGTTTTCTCCTAATGGCTTCAGCCGATGTCGAGTTTCGGT
GCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTCCATGAG
GCCTTCAGTGCTTACGGCGATATCCTTGAATCGAAGGTCCGTTTGAACCA
GATCCGACCCGATCCACGATTCGGCTTGTTCTGATCTGTGATTCGTGTGC
TCTGTGATCTGTTTCTGTTACTCTGTTACTGTTCTCTGTTACTACTGTTA
CTCTATTATTACTATGCCTAAATCGGTACGTTCATCTTCATCTTTTTATT
AAGACGAAGGGCCCGATCGGATTTATTATTATTTTTATTGTTATTAAGTT
TCCAGATCTGAGATGAATTTGCTAAATTATTTTTTTGTTTATCCTCGCTA
ATTCAGATTATTAACGATCGCGAGACTGGAAGATCCAGAGGATTTGGATT
CGTTACCTTCCGCGATGAGAAGTCGATGAGGGACGCAATCGAAGGCATGA
ACGGCCAGAATCTGGACGGCCGTAACATAACAGTCAACGAGGCCCAGTCC
CGTGCAATCGGTGACGGTGGCGGTGGCGGTTACTGAAGCCGTGGCGGTGG
TGGATATGGAGGTGGT
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