FC930158

Overview
NameFC930158
Unique NameFC930158
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9401 contig Ccv1_Contig9401:6..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930158 vs. ExPASy Swiss-Prot
Match: AOC3_ARATH (Allene oxide cyclase 3, chloroplastic OS=Arabidopsis thaliana GN=AOC3 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.957e-61
Identity = 127/207 (61.35%), Postives = 149/207 (71.98%), Query Frame = 2
Query:   74 ASASSLKPIXXXXXXXXXXXXXXETQRLLGFKSSFSSHHRNLSLSTTHQDVSRRS----SKNNVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQL 682
            ++A SL+ I                  LLGF  SF    +NL +S+   D S RS    SKN   T+AFF+N    + ++SRP+  K+QEL VYE+NE DRNSPA+LKL +KP  L +GDLVPFTNKLYTGDL+KR+GITAGLCVLI+H PEK GDRFEA YSFYFGDYGH+SVQG YLTYEDT+LAVTGGSGIFEG YGQVKL QL
Sbjct:    5 SAAMSLESISMTTLNNLSRNHQSHRSSLLGFSRSF----QNLGISSNGPDFSSRSRSTTSKNLNVTRAFFWNW-GKKTENSRPS--KIQELNVYELNEGDRNSPAVLKLGKKPTELCLGDLVPFTNKLYTGDLKKRVGITAGLCVLIQHVPEKSGDRFEASYSFYFGDYGHLSVQGQYLTYEDTFLAVTGGSGIFEGAYGQVKLRQL 204          
BLAST of FC930158 vs. ExPASy Swiss-Prot
Match: AOC4_ARATH (Allene oxide cyclase 4, chloroplastic OS=Arabidopsis thaliana GN=AOC4 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.794e-58
Identity = 118/176 (67.05%), Postives = 132/176 (75.00%), Query Frame = 2
Query:  158 LGFKSSFSSHHRNLSLSTTHQDVSRRSSKNNVTTKAFFFNK-PSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQL 682
            LGF  SF     N  +S+    +S R+     +T  FF     SS  D SRP   K+QEL VYE NE DRNSPA+LKL +KP+ L +GDLVPFTNKLYTGDL KRIGITAGLCVLI+H PEKKGDRFEA YSFYFGDYGHISVQG YLTYEDT+LA+TGGSG+FEG YGQVKL QL
Sbjct:   31 LGFSRSF----HNQRISSNSPGLSTRARSTTSSTGGFFRTICSSSSNDYSRPT--KIQELNVYEFNEGDRNSPAVLKLGKKPDQLCLGDLVPFTNKLYTGDLTKRIGITAGLCVLIQHVPEKKGDRFEASYSFYFGDYGHISVQGPYLTYEDTFLAITGGSGVFEGAYGQVKLRQL 200          
BLAST of FC930158 vs. ExPASy Swiss-Prot
Match: AOC2_ARATH (Allene oxide cyclase 2, chloroplastic OS=Arabidopsis thaliana GN=AOC2 PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.180e-51
Identity = 114/206 (55.34%), Postives = 135/206 (65.53%), Query Frame = 2
Query:   74 ASASSLKPIXXXXXXXXXXXXXXETQRLLGFKSSFSSHHRNLSLSTTHQDVSRRSS---KNNVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQL 682
            +SA SL+ I                  LLG   SF    +NL +S+   D S  SS   K N+T         S   +   P  +KVQEL VYEINE DR+SP ILK +       +GDLVPFTNKLYTGDL+KR+GITAGLCV+I+H PEKKG+RFEA YSFYFGDYGH+SVQG YLTYED++LA+TGG+GIFEG YGQVKL QL
Sbjct:    3 SSAVSLQSISMTTLNNLSCNQQFHRSSLLGSSKSF----QNLGISSNGSDFSYPSSFTAKKNLTASRAL----SQNGNIENPRPSKVQELSVYEINELDRHSPKILK-NAFSLMFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQL 199          
BLAST of FC930158 vs. ExPASy Swiss-Prot
Match: AOC1_ARATH (Allene oxide cyclase 1, chloroplastic OS=Arabidopsis thaliana GN=AOC1 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.988e-49
Identity = 103/176 (58.52%), Postives = 125/176 (71.02%), Query Frame = 2
Query:  155 LLGFKSSFSSHHRNLSLSTTHQDVSRRSSKNNVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQL 682
            LLGF  SF +   + +   +    S    K    T+A   N  +++     P  +KVQEL VYEIN+ DR+SP ILK +       +GDLVPFTNKLYTGDL+KR+GITAGLCV+I+H PEK GDRFEA YSFYFGDYGH+SVQG YLTYED++LA+TGG+GIFEG YGQVKL QL
Sbjct:   30 LLGFSKSFQNFGISSNGPGSSSPTSFTPKKKLTPTRALSQNLGNTE----NPRPSKVQELSVYEINDLDRHSPKILK-NAFSFRFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKNGDRFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQL 200          
The following BLAST results are available for this feature:
BLAST of FC930158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
AOC3_ARATH2.957e-6161.35Allene oxide cyclase 3, chloroplastic OS=Arabidops... [more]
AOC4_ARATH1.794e-5867.05Allene oxide cyclase 4, chloroplastic OS=Arabidops... [more]
AOC2_ARATH6.180e-5155.34Allene oxide cyclase 2, chloroplastic OS=Arabidops... [more]
AOC1_ARATH1.988e-4958.52Allene oxide cyclase 1, chloroplastic OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionC34004D07EF PostHarvC1 Citrus clementina cDNA clone C34004D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930158 ID=FC930158; Name=FC930158; organism=Citrus clementina; type=EST; length=688bp
GGCTCCATTTCATTTCTTGAATCATCGCCATCCAGATAACTTTACTCATT
CAATATTCTGCAAATCAATAATGGCCTCTGCAAGCTCTCTCAAGCCCATC
TCTTATTCTCTGAACCTCCCTAACTCGAGATCCTCTTCTTCCGAAACCCA
AAGGTTGCTAGGTTTCAAATCATCTTTTTCCTCTCATCATCGAAACCTCA
GTCTCTCAACAACCCACCAAGATGTCTCAAGAAGAAGCTCCAAGAACAAC
GTCACCACCAAAGCTTTCTTCTTCAACAAACCCAGCAGCCAACCAGATTC
TTCCAGGCCTGCTAATAATAAGGTTCAAGAACTGTTCGTGTATGAGATCA
ACGAGCGGGACAGAAACAGCCCGGCAATTCTGAAGCTAAGCCAAAAGCCT
GAACATCTCACAATCGGCGACCTTGTGCCCTTCACGAACAAGCTCTACAC
CGGCGACTTACAGAAGCGCATTGGCATCACGGCGGGGCTCTGCGTGTTGA
TCAAGCACGAACCGGAGAAGAAGGGTGACCGGTTTGAAGCGATTTACAGC
TTCTACTTCGGTGACTACGGTCACATATCCGTGCAGGGAGCTTATTTGAC
TTACGAAGACACGTACTTGGCCGTCACCGGTGGCTCCGGGATCTTTGAGG
GCGTGTACGGACAAGTCAAGTTGCATCAATTGTTTTCC
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