FC930160

Overview
NameFC930160
Unique NameFC930160
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15110 contig Ccv1_Contig15110:1..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930160 vs. ExPASy Swiss-Prot
Match: DI194_ARATH (Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Arabidopsis thaliana GN=DI19-4 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.274e-30
Identity = 63/120 (52.50%), Postives = 82/120 (68.33%), Query Frame = 3
Query:  336 EYPCPFCSEDFDLVGLCCHIDEEHPVEAKSGVCPVCVTRVTMDMVDHITTQHGNISNSWHKLKLHKGNSNSTISSLRKELQNAHFQSLLARXXXXXXXXXXXXDPWL-SFIYNMPTADES 692
            E+ CPFC+EDFD+VGLCCHIDEEHPVEAK+GVCPVC  RV +D+V HITTQH N      + +L +G  +ST  +L+KEL+ A+ QSLL              DP L SF++N P+ ++S
Sbjct:   46 EFICPFCAEDFDIVGLCCHIDEEHPVEAKNGVCPVCTKRVGLDIVGHITTQHANFFKVQRRRRLRRGGYSSTYLALKKELREANLQSLLGGSSSFTSSTNIDSDPLLSSFMFNSPSVNQS 165          
BLAST of FC930160 vs. ExPASy Swiss-Prot
Match: DI197_ARATH (Protein DEHYDRATION-INDUCED 19 homolog 7 OS=Arabidopsis thaliana GN=DI19-7 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.458e-26
Identity = 58/117 (49.57%), Postives = 78/117 (66.67%), Query Frame = 3
Query:  336 EYPCPFCSEDFDLVGLCCHIDEEHPVEAKSGVCPVCVTRVTMDMVDHITTQHGNISNSWHKLKLHKGNSNSTISSLRKELQNAHFQSLLARXXXXXXXXXXXXDPWL-SFIYNMPTA 683
            E+ CPFC+++FD+VGLCCHID  HPVEAK+GVCPVC  +V +D+V HITTQHGN+     + +L KG  +ST  +L+KEL+ A+ QS L              DP L SF++  P+A
Sbjct:   42 EFMCPFCADEFDIVGLCCHIDVNHPVEAKNGVCPVCTKKVGLDIVGHITTQHGNVFKVQRRRRLRKGGYSSTYLTLKKELREANLQS-LGGSSTFIPSSNIDSDPLLSSFMFKPPSA 157          
BLAST of FC930160 vs. ExPASy Swiss-Prot
Match: DI193_ARATH (Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Arabidopsis thaliana GN=DI19-3 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.242e-26
Identity = 53/88 (60.23%), Postives = 65/88 (73.86%), Query Frame = 3
Query:  336 EYPCPFCSEDFDLVGLCCHIDEEHPVEAKSGVCPVCVTRVTMDMVDHITTQHGNISNSWHKLKLHKGNSNSTISSLRKELQNAHFQSL 599
            E+ CPFCS+ FD+V LCCHIDE+HP+EAK+GVCPVC  RV +DMV HIT QH NI     K K  +G S ST+S LR+E  + +FQSL
Sbjct:   43 EFACPFCSDYFDIVSLCCHIDEDHPMEAKNGVCPVCAVRVGVDMVAHITLQHANIFKMHRKRKPRRGGSYSTLSILRREFPDGNFQSL 130          
BLAST of FC930160 vs. ExPASy Swiss-Prot
Match: DI192_ORYSJ (Protein DEHYDRATION-INDUCED 19 homolog 2 OS=Oryza sativa subsp. japonica GN=DI19-2 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.045e-24
Identity = 55/126 (43.65%), Postives = 76/126 (60.32%), Query Frame = 3
Query:  327 GEYEYPCPFCSEDFDLVGLCCHIDEEHPVEAKSGVCPVCVTRVTMDMVDHITTQHGNISNSWHKLKLHK--GNSNSTISSLRKELQNAHFQSLLARXXXXXXXXXXXXDPWL-SFIYNMPTADESE 695
            G   Y CPFC EDFD V  CCH+D+EH VEAKSGVCP+C TRV +D++ H+T QHG+      + ++ K    S+S +S LRK+L++   QS L              DP+L S I ++P A+ S+
Sbjct:   50 GGEAYNCPFCGEDFDFVAFCCHVDDEHAVEAKSGVCPICATRVGVDLIGHLTMQHGSYFKMQRRRRVRKISSGSHSLLSLLRKDLRDGSLQSFLGGSSYVSNPPAAAPDPFLSSLICSLPVAEPSK 175          
BLAST of FC930160 vs. ExPASy Swiss-Prot
Match: DI196_ARATH (Protein DEHYDRATION-INDUCED 19 homolog 6 OS=Arabidopsis thaliana GN=DI19-6 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.040e-24
Identity = 46/88 (52.27%), Postives = 64/88 (72.73%), Query Frame = 3
Query:  336 EYPCPFCSEDFDLVGLCCHIDEEHPVEAKSGVCPVCVTRVTMDMVDHITTQHGNISNSWHKLKLHKGNSNSTISSLRKELQNAHFQSL 599
            EY CPFCS+ FD+V LCCHIDE+HP++AK+GVCP+C  +V+ DM+ HIT QH N+     K K  +G + S +S L++E  + +FQSL
Sbjct:   43 EYACPFCSDYFDIVSLCCHIDEDHPMDAKNGVCPICAVKVSSDMIAHITLQHANMFKVTRKRKSRRGGAQSMLSILKREFPDGNFQSL 130          
BLAST of FC930160 vs. ExPASy Swiss-Prot
Match: DI191_ARATH (Protein DEHYDRATION-INDUCED 19 OS=Arabidopsis thaliana GN=DI19-1 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.733e-23
Identity = 46/89 (51.69%), Postives = 63/89 (70.79%), Query Frame = 3
Query:  336 EYPCPFCSEDFDLVGLCCHIDEEHPVEAKSGVCPVCVTRVTMDMVDHITTQHGNISNSWHKLKLHKGNSNSTISSLRKELQNAHFQSLL 602
            E+ CPFC+E +D++GLCCHID+EH +E+K+ VCPVC  +V +D+V HIT  HG++     K K  K  +NST+S LRKEL+    Q LL
Sbjct:   34 EFACPFCAESYDIIGLCCHIDDEHTLESKNAVCPVCSLKVGVDIVAHITLHHGSLFKLQRKRKSRKSGTNSTLSLLRKELREGDLQRLL 122          
BLAST of FC930160 vs. ExPASy Swiss-Prot
Match: DI195_ARATH (Protein DEHYDRATION-INDUCED 19 homolog 5 OS=Arabidopsis thaliana GN=DI19-5 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.488e-23
Identity = 55/120 (45.83%), Postives = 73/120 (60.83%), Query Frame = 3
Query:  336 EYPCPFCSEDFDLVGLCCHIDEEHPVEAKSGVCPVCVTRVTMDMVDHITTQHGNISNSWHKLKLHKGNSNSTISSLRKELQNAHFQSLLARXXXXXXXXXXXXDPWLSFIYNMPTADESE 695
            +YPCPFCS+D+DLV LC HIDEEH ++A +G+CPVC  RV M MVDHITTQH ++       +L+K  S S  S   ++    + QSL+              DP LSFIYN P+  +S+
Sbjct:   42 DYPCPFCSDDYDLVELCHHIDEEHQLDANNGICPVCSRRVKMHMVDHITTQHRDVFK-----RLYKDESYSAFSPGTRK----YLQSLIDEPLSTNHTSKSVLDPLLSFIYNPPSPKKSK 152          
BLAST of FC930160 vs. ExPASy Swiss-Prot
Match: DI191_ORYSJ (Protein DEHYDRATION-INDUCED 19 OS=Oryza sativa subsp. japonica GN=DI19-1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.252e-18
Identity = 46/125 (36.80%), Postives = 68/125 (54.40%), Query Frame = 3
Query:  336 EYPCPFCSEDFDLVGLCCHIDEEHPVEAKSGVCPVCVTRVTMDMVDHITTQHGNISNSWHKLKLHKGNSNSTISSLRKELQNAHFQSLLA----RXXXXXXXXXXXXDPWL-SFIYNMPTADESE 695
            E+ CP+C ED D+V LC H++EEHP E  +  CP+C  ++  DM++HIT QHG +  +  +L+      +  +S L ++L+ AH Q LL     R            DP L SF  + PT+D  E
Sbjct:   41 EFACPYCYEDHDVVSLCAHLEEEHPFEPHAAPCPICSDKIAKDMLNHITVQHGYLFKNRRRLRRFVIPGSQALSLLSRDLREAHLQVLLGGGGHRSNNSSNTTNISADPLLSSFGLSFPTSDTEE 165          
BLAST of FC930160 vs. ExPASy Swiss-Prot
Match: DI192_ARATH (Protein DEHYDRATION-INDUCED 19 homolog 2 OS=Arabidopsis thaliana GN=DI19-2 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 53/158 (33.54%), Postives = 76/158 (48.10%), Query Frame = 3
Query:  222 STSSSRNYQSTLKSQFAXXXXXXXXXXXXXXXXVKGEYEYPCPFCSEDFDLVGLCCHIDEEHPVEAKSGVCPVCVTRVTMDMVDHITTQHGNISNSWHKLKLHKGNSNSTISSLRKELQNAHFQSLLARXXXXXXXXXXXXDPWLSFIYNMPTADESE 695
            S+ SSR+Y+S   +++                 +    EYPCPFC+ D+DLV LC HIDEEH  EA +G+CPVC  RV M MVDHIT+ H ++  S  K   ++ +       L  +    H   L               D +LSFI N    ++++
Sbjct:   10 SSGSSRSYRSETAAKYQSGPYQDLEEFEEVDDDIA--VEYPCPFCASDYDLVELCHHIDEEHRHEANNGICPVCSKRVKMHMVDHITSHHRDVLKSEQKEMSYRED-----PYLSDKYLQPHLDELPPSMNHHQHPSKHVSDQFLSFINNSALPNQTK 160          
BLAST of FC930160 vs. ExPASy Swiss-Prot
Match: DI193_ORYSJ (Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Oryza sativa subsp. japonica GN=DI19-3 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.788e-16
Identity = 33/86 (38.37%), Postives = 55/86 (63.95%), Query Frame = 3
Query:  345 CPFCSEDFDLVGLCCHIDEEHPVEAKSGVCPVCVTRVTMDMVDHITTQHGNISNSWHKLKLHKGNSNSTISSLRKELQNAHFQSLL 602
            CP+C ED D+  LC H++E+HP E  +  CP+C  ++T DM++HIT QHG +  S  +++      +  +S L ++L++A  Q+LL
Sbjct:   64 CPYCYEDHDIASLCAHLEEDHPYEPHTSPCPICFEKITRDMLNHITMQHGYLFKSGRRMRRFDIPESQALSLLSRDLRDAQLQALL 149          
The following BLAST results are available for this feature:
BLAST of FC930160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
DI194_ARATH1.274e-3052.50Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Arabid... [more]
DI197_ARATH1.458e-2649.57Protein DEHYDRATION-INDUCED 19 homolog 7 OS=Arabid... [more]
DI193_ARATH4.242e-2660.23Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Arabid... [more]
DI192_ORYSJ1.045e-2443.65Protein DEHYDRATION-INDUCED 19 homolog 2 OS=Oryza ... [more]
DI196_ARATH3.040e-2452.27Protein DEHYDRATION-INDUCED 19 homolog 6 OS=Arabid... [more]
DI191_ARATH5.733e-2351.69Protein DEHYDRATION-INDUCED 19 OS=Arabidopsis thal... [more]
DI195_ARATH7.488e-2345.83Protein DEHYDRATION-INDUCED 19 homolog 5 OS=Arabid... [more]
DI191_ORYSJ4.252e-1836.80Protein DEHYDRATION-INDUCED 19 OS=Oryza sativa sub... [more]
DI192_ARATH1.237e-1733.54Protein DEHYDRATION-INDUCED 19 homolog 2 OS=Arabid... [more]
DI193_ORYSJ6.788e-1638.37Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Oryza ... [more]

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Properties
Property NameValue
Genbank descriptionC34004D09EF PostHarvC1 Citrus clementina cDNA clone C34004D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930160 ID=FC930160; Name=FC930160; organism=Citrus clementina; type=EST; length=709bp
GAAACAGGTCCTTACGTTTCTTCCTCGAATTTCACTTCTTCTTTCGTTGC
TCCGCGTTAAAGCACGCGTTATTTATAAACTCAGTGAGCCAGTCAAGACT
CGAGCGCTTAAAATCAAAGGGGAAGTTTACTCGCTATTTTATGCTATCAT
CTGAATTGGGTTTTGTTTGTGAATTTTAATTAACAGAAGATTCAATGGAT
TACAGTAGATACTTTGGTCTTTCTACTTCATCATCAAGGAACTATCAGTC
AACTCTCAAGTCTCAGTTTGCGGATTTTTGCATTGATTTTGAGGATATAG
AAGAAGATGATTATGAGGAAGTGAAAGGAGAGTATGAGTATCCATGCCCA
TTTTGTTCGGAGGATTTTGATTTAGTTGGATTATGCTGTCATATTGATGA
GGAACATCCTGTTGAAGCAAAGTCGGGGGTATGCCCTGTTTGCGTTACAA
GGGTAACGATGGACATGGTTGATCACATAACAACACAACATGGAAACATT
TCAAATAGTTGGCACAAATTAAAACTTCATAAAGGCAACTCTAATTCAAC
TATATCATCTTTGAGGAAAGAGTTGCAAAATGCACATTTTCAATCTCTTC
TTGCAAGGTCATCCTCTTCTGTTTCTTCCTCCAAAAAGACATCTGATCCA
TGGCTATCATTTATTTACAACATGCCTACTGCTGACGAGTCTGAAGCATA
CAGCCTGCT
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