FC930161

Overview
NameFC930161
Unique NameFC930161
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14213 contig Ccv1_Contig14213:156..865. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930161 vs. ExPASy Swiss-Prot
Match: Y2766_ARATH (Uncharacterized protein At2g37660, chloroplastic OS=Arabidopsis thaliana GN=At2g37660 PE=1 SV=2)

HSP 1 Score: 355.525 bits (911), Expect = 1.592e-97
Identity = 172/197 (87.31%), Postives = 190/197 (96.45%), Query Frame = 1 
Query:  118 TVLVTGAGGRTGQIVYKKLKERSEQYAARGLVRTEESKQKIGGADDLFIGDIRDSNSIIPAIQGIDALLILTSAVPKMKPDFDPAKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIRELLVGKDDELLQTETRT 708
            TVLVTGAGGRTGQIVYKKLKERSEQ+ ARGLVRT+ESK+KI G D++FIGDIRD+ SI PA++GIDAL+ILTSAVP+MKP FDP+KGGRPEF+F++GAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTN+NHPLNS+GN NILVWKRKAEQYLADSGIPYTIIRAGGLQDK+GGIRELLVGKDDELL+TETRT
Sbjct:   78 TVLVTGAGGRTGQIVYKKLKERSEQFVARGLVRTKESKEKINGEDEVFIGDIRDTASIAPAVEGIDALVILTSAVPQMKPGFDPSKGGRPEFFFDDGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTNINHPLNSIGNANILVWKRKAEQYLADSGIPYTIIRAGGLQDKDGGIRELLVGKDDELLETETRT 274
[Close]
BLAST of FC930161 vs. ExPASy Swiss-Prot
Match: Y5224_ARATH (Uncharacterized protein At5g02240 OS=Arabidopsis thaliana GN=At5g02240 PE=1 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 4.642e-89
Identity = 160/197 (81.22%), Postives = 177/197 (89.85%), Query Frame = 1 
Query:  118 TVLVTGAGGRTGQIVYKKLKERSEQYAARGLVRTEESKQKIGGADDLFIGDIRDSNSIIPAIQGIDALLILTSAVPKMKPDFDPAKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIRELLVGKDDELLQTETRT 708
            TVLVTGA GRTGQIVYKKLKE S+++ A+GLVR+ + K+KIGG  D+FIGDI D++SI PA QGIDAL+ILTSAVPKMKP FDP KGGRPEF FE+G YPEQVDWIGQKNQIDAAK AGVK IV+VGSMGGTN +HPLN LGNGNILVWKRKAEQYLADSG PYTIIRAGGL DKEGG+RELLVGKDDELLQT+T+T
Sbjct:    6 TVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGGVRELLVGKDDELLQTDTKT 202
The following BLAST results are available for this feature:
BLAST of FC930161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y2766_ARATH1.592e-9787.31Uncharacterized protein At2g37660, chloroplastic O... [more]
Y5224_ARATH4.642e-8981.22Uncharacterized protein At5g02240 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC34004D10EF PostHarvC1 Citrus clementina cDNA clone C34004D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930161 ID=FC930161; Name=FC930161; organism=Citrus clementina; type=EST; length=710bp
GACGCTTTCCGCGCTCGCTATTCTCCTTCTTCACTAACATCACTTCCGAG
AACGAGATACCGAAGGAGTTGCGTCAGTAAAACCGAAGCAGTCAAAGTTT
TATCGATGGCTAAGAGTACCGTTCTTGTCACCGGCGCTGGTGGTCGAACC
GGTCAAATAGTTTATAAGAAATTAAAGGAGAGGTCAGAGCAATATGCTGC
TAGAGGTTTGGTCAGAACTGAGGAGAGCAAGCAGAAAATTGGCGGAGCAG
ATGATCTTTTTATTGGTGACATAAGGGACTCTAATAGCATCATTCCTGCA
ATCCAAGGAATCGATGCTCTCTTAATTCTCACAAGTGCAGTACCAAAGAT
GAAACCTGATTTTGATCCTGCCAAAGGTGGAAGGCCTGAGTTCTACTTTG
AAGAGGGTGCATATCCTGAACAGGTTGATTGGATTGGTCAGAAAAATCAA
ATTGATGCTGCTAAGGCTGCTGGAGTGAAGCAAATTGTGTTGGTTGGATC
GATGGGAGGAACAAATCTTAATCATCCCTTGAACAGTTTGGGCAATGGCA
ATATATTGGTTTGGAAAAGAAAGGCTGAGCAGTATTTGGCTGACTCTGGT
ATTCCATACACAATTATAAGGGCCGGAGGCCTTCAGGATAAAGAAGGTGG
TATCCGAGAATTGCTTGTCGGTAAGGATGATGAACTTCTTCAGACAGAAA
CAAGGACATT
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