FC930164

Overview
NameFC930164
Unique NameFC930164
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930164 vs. ExPASy Swiss-Prot
Match: MARE3_HUMAN (Microtubule-associated protein RP/EB family member 3 OS=Homo sapiens GN=MAPRE3 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.212e-30
Identity = 77/215 (35.81%), Postives = 121/215 (56.28%), Query Frame = 2
Query:  110 VGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNP-VERRCKGGKERSSRGSQKISKSLQ--------------TNNMHNAGSGD-------IGHKPRQAKIYGANSAQEVQALSKEITDLKLSVDLLEEERDFY 688
            + R+++L W+N+ L L+ ++IE+  SGA  CQ +DM +PG V + KV F AK E++ I N+KVLQ  F K+ ++K I V KLVKG+  DN EF+QW K++ D+   G   ++YNP + R+ +      + G Q  +KS +                NM  +G          +   P  A+  G  +  ++  L++++ DLKL+VD LE+ERDFY
Sbjct:   15 LSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYDG---KDYNPLLARQGQDVAPPPNPGDQIFNKSKKLIGTAVPQRTSPTGPKNMQTSGRLSNVAPPCILRKNPPSARNGGHETDAQILELNQQLVDLKLTVDGLEKERDFY 226          
BLAST of FC930164 vs. ExPASy Swiss-Prot
Match: MARE3_RAT (Microtubule-associated protein RP/EB family member 3 OS=Rattus norvegicus GN=Mapre3 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.582e-30
Identity = 77/215 (35.81%), Postives = 121/215 (56.28%), Query Frame = 2
Query:  110 VGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNP-VERRCKGGKERSSRGSQKISKSLQ--------------TNNMHNAGSGD-------IGHKPRQAKIYGANSAQEVQALSKEITDLKLSVDLLEEERDFY 688
            + R+++L W+N+ L L+ ++IE+  SGA  CQ +DM +PG V + KV F AK E++ I N+KVLQ  F K+ ++K I V KLVKG+  DN EF+QW K++ D+   G   ++YNP + R+ +      + G Q  +KS +                NM  +G          +   P  A+  G  +  ++  L++++ DLKL+VD LE+ERDFY
Sbjct:   15 LSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYDG---KDYNPLLARQGQDVAPPPNPGDQIFNKSKKLIGTAVPQRTSPTGPKNMQTSGRLSNVAPPCILRKNPPSARNGGHEADAQILELNQQLLDLKLTVDGLEKERDFY 226          
BLAST of FC930164 vs. ExPASy Swiss-Prot
Match: MARE3_MOUSE (Microtubule-associated protein RP/EB family member 3 OS=Mus musculus GN=Mapre3 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.582e-30
Identity = 77/215 (35.81%), Postives = 121/215 (56.28%), Query Frame = 2
Query:  110 VGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNP-VERRCKGGKERSSRGSQKISKSLQ--------------TNNMHNAGSGD-------IGHKPRQAKIYGANSAQEVQALSKEITDLKLSVDLLEEERDFY 688
            + R+++L W+N+ L L+ ++IE+  SGA  CQ +DM +PG V + KV F AK E++ I N+KVLQ  F K+ ++K I V KLVKG+  DN EF+QW K++ D+   G   ++YNP + R+ +      + G Q  +KS +                NM  +G          +   P  A+  G  +  ++  L++++ DLKL+VD LE+ERDFY
Sbjct:   15 LSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYDG---KDYNPLLARQGQDVAPPPNPGDQIFNKSKKLIGTAVPQRTSPTGPKNMQTSGRLSNVAPPCILRKNPPSARNGGHEADAQILELNQQLLDLKLTVDGLEKERDFY 226          
BLAST of FC930164 vs. ExPASy Swiss-Prot
Match: MARE1_PONAB (Microtubule-associated protein RP/EB family member 1 OS=Pongo abelii GN=MAPRE1 PE=2 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 3.525e-30
Identity = 77/211 (36.49%), Postives = 116/211 (54.98%), Query Frame = 2
Query:  110 VGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERR------------------CKGGKERSSRGSQKISKSLQTNNMHNAGSGDIGHKPRQAKIYGANSAQEVQALSKEITDLKLSVDLLEEERDFY 688
            + R+++L WIN  LQL+L++IE+  SGA  CQ +DM +PG + + KV F AK E++ IQN+K+LQ  F ++ ++K I V+KLVKG+  DN EF+QW K++ D+   G   ++Y+PV  R                   K     SS   Q+   + +T     AG G +   P        N   E   L +++  LKL+V+ LE+ERDFY
Sbjct:   15 LSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG---KDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSSSAAPQRPISTQRTAAAPKAGPGVVRKNPGV-----GNGDDEAAELMQQVNVLKLTVEDLEKERDFY 217          
BLAST of FC930164 vs. ExPASy Swiss-Prot
Match: MARE1_HUMAN (Microtubule-associated protein RP/EB family member 1 OS=Homo sapiens GN=MAPRE1 PE=1 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 4.604e-30
Identity = 77/211 (36.49%), Postives = 116/211 (54.98%), Query Frame = 2
Query:  110 VGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERR------------------CKGGKERSSRGSQKISKSLQTNNMHNAGSGDIGHKPRQAKIYGANSAQEVQALSKEITDLKLSVDLLEEERDFY 688
            + R+++L WIN  LQL+L++IE+  SGA  CQ +DM +PG + + KV F AK E++ IQN+K+LQ  F ++ ++K I V+KLVKG+  DN EF+QW K++ D+   G   ++Y+PV  R                   K     SS   Q+   + +T     AG G +   P        N   E   L +++  LKL+V+ LE+ERDFY
Sbjct:   15 LSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG---KDYDPVAARQGQETAVAPSLVAPALNKPKKPLTSSSAAPQRPISTQRTAAAPKAGPGVVRKNPGV-----GNGDDEAAELMQQVNVLKLTVEDLEKERDFY 217          
BLAST of FC930164 vs. ExPASy Swiss-Prot
Match: MARE1_BOVIN (Microtubule-associated protein RP/EB family member 1 OS=Bos taurus GN=MAPRE1 PE=2 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 4.604e-30
Identity = 77/211 (36.49%), Postives = 115/211 (54.50%), Query Frame = 2
Query:  110 VGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERR------------------CKGGKERSSRGSQKISKSLQTNNMHNAGSGDIGHKPRQAKIYGANSAQEVQALSKEITDLKLSVDLLEEERDFY 688
            + R+++L WIN  LQL+L++IE+  SGA  CQ +DM +PG + + KV F AK E++ IQN+K+LQ  F ++ ++K I V+KLVKG+  DN EF+QW K++ D+   G   + Y+PV  R                   K     SS   Q+   + +T     AG G +   P        N   E   L +++  LKL+V+ LE+ERDFY
Sbjct:   15 LSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG---KEYDPVAARQGQETAMAPSLVAPALNKPKKPLSSSSAAPQRPITTHRTTATPKAGPGVVRKNPGV-----GNGDDEAAELMQQVNVLKLTVEDLEKERDFY 217          
BLAST of FC930164 vs. ExPASy Swiss-Prot
Match: MARE1_RAT (Microtubule-associated protein RP/EB family member 1 OS=Rattus norvegicus GN=Mapre1 PE=1 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 7.853e-30
Identity = 77/213 (36.15%), Postives = 117/213 (54.93%), Query Frame = 2
Query:  110 VGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRCKGGKERS--------------------SRGSQKISKSLQTNNMHNAGSGDIGHKPRQAKIYGANSAQEVQALSKEITDLKLSVDLLEEERDFY 688
            + R+++L WIN  LQL+L++IE+  SGA  CQ +DM +PG + + KV F AK E++ IQN+K+LQ  F ++ ++K I V+KLVKG+  DN EF+QW K++ D+   G   + Y+PV  R   G+E +                    S   Q+   + +T     AG G +   P        N   E   L +++  LKL+V+ LE+ERDFY
Sbjct:   15 LSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG---KEYDPVAAR--QGQETAVAPSLVAPALSKPKKPLGSGSAAPQRPIATQRTTAAPKAGPGMVRKNPGM-----GNGDDEAAELMQQVKVLKLTVEDLEKERDFY 217          
BLAST of FC930164 vs. ExPASy Swiss-Prot
Match: MARE1_MOUSE (Microtubule-associated protein RP/EB family member 1 OS=Mus musculus GN=Mapre1 PE=1 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.340e-29
Identity = 77/213 (36.15%), Postives = 117/213 (54.93%), Query Frame = 2
Query:  110 VGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRCKGGKE--------------------RSSRGSQKISKSLQTNNMHNAGSGDIGHKPRQAKIYGANSAQEVQALSKEITDLKLSVDLLEEERDFY 688
            + R+++L WIN  LQL+L++IE+  SGA  CQ +DM +PG + + KV F AK E++ IQN+K+LQ  F ++ ++K I V+KLVKG+  DN EF+QW K++ D+   G   + Y+PV  R   G+E                     S+   Q+   + +T     AG G +   P        N   E   L +++  LKL+V+ LE+ERDFY
Sbjct:   15 LSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG---KEYDPVAAR--QGQETAVAPSLVAPALSKPKKPLGSSTAAPQRPIATQRTTAAPKAGPGMVRKNPGV-----GNGDDEAAELMQQVKVLKLTVEDLEKERDFY 217          
BLAST of FC930164 vs. ExPASy Swiss-Prot
Match: MARE1_COTJA (Microtubule-associated protein RP/EB family member 1 OS=Coturnix coturnix japonica GN=MAPRE1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.984e-29
Identity = 79/210 (37.62%), Postives = 119/210 (56.67%), Query Frame = 2
Query:  110 VGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRCKGGKERSSRGSQKISKSLQTNNMHN----AGSGDIG-HKPRQAK------------IYGANSAQEVQALSKEITDLKLSVDLLEEERDFY 688
            + R+++L WIN  LQL L++IE+  SGA  CQ +DM +PG V + KV F AK E++ IQN+KVLQ  F ++ ++K I V+KLVKG+  DN EF+QW K++ D+   G   + Y+PV  R         +G + ++ +L    M+      G+G  G  +P  A+            +  A    E   L ++I  LKL+V+ LE+ERDFY
Sbjct:   15 LSRHDMLAWINESLQLTLTKIEQLCSGAAYCQFMDMLFPGSVALKKVKFQAKLEHEYIQNFKVLQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG---KEYDPVAAR---------QGQETVAPNLVAPVMNKPKKPLGTGSAGPQRPIVAQRTPATPKGGTGMVKKAAGDDESAGLIEQINVLKLTVEDLEKERDFY 212          
BLAST of FC930164 vs. ExPASy Swiss-Prot
Match: MARE1_XENTR (Microtubule-associated protein RP/EB family member 1 OS=Xenopus tropicalis GN=mapre1 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.898e-29
Identity = 78/211 (36.97%), Postives = 119/211 (56.40%), Query Frame = 2
Query:  110 VGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRCKGGKERSSRGSQKISKSLQTNNMHNAGSGD-------------IGHKPRQAKIYG-----ANSAQEVQALSKEITDLKLSVDLLEEERDFY 688
            + R+++L WIN  LQL+L++IE+  SG+V CQ +DM +PG V + KV F AK E++ IQN+KVLQ  F K+ ++K I V+KLVKG+  DN EF+QW K++ D+   G   ++Y+PV  R    + + S     ++  +        GSG+             + +KP    I        N   E   L ++I  LK++V+ LE+ERDFY
Sbjct:   15 LSRHDMLAWINESLQLNLTKIEQLCSGSVYCQFMDMLFPGSVVLKKVKFQAKLEHEYIQNFKVLQAGFKKMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG---KDYDPVAAR----QGQESAPVPVLAAPVLNKPKKPLGSGNTAPQRTVPVQRTAVSNKPPAQGISKKPATVGNGDDESAELIQQINVLKITVEDLEKERDFY 218          
The following BLAST results are available for this feature:
BLAST of FC930164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
MARE3_HUMAN1.212e-3035.81Microtubule-associated protein RP/EB family member... [more]
MARE3_RAT1.582e-3035.81Microtubule-associated protein RP/EB family member... [more]
MARE3_MOUSE1.582e-3035.81Microtubule-associated protein RP/EB family member... [more]
MARE1_PONAB3.525e-3036.49Microtubule-associated protein RP/EB family member... [more]
MARE1_HUMAN4.604e-3036.49Microtubule-associated protein RP/EB family member... [more]
MARE1_BOVIN4.604e-3036.49Microtubule-associated protein RP/EB family member... [more]
MARE1_RAT7.853e-3036.15Microtubule-associated protein RP/EB family member... [more]
MARE1_MOUSE1.340e-2936.15Microtubule-associated protein RP/EB family member... [more]
MARE1_COTJA2.984e-2937.62Microtubule-associated protein RP/EB family member... [more]
MARE1_XENTR3.898e-2936.97Microtubule-associated protein RP/EB family member... [more]

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Properties
Property NameValue
Genbank descriptionC34004E01EF PostHarvC1 Citrus clementina cDNA clone C34004E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930164 ID=FC930164; Name=FC930164; organism=Citrus clementina; type=EST; length=689bp
GAAAAGGGCCGGTTGCCAGCTTTTTTCTCTACTGTCTTCTTTCGCTTTGA
AGAAACCGATTAAGAGAAAAATGGCAACCAACATTGGAATGATGGACAGT
GCGTATTTTGTTGGAAGAAATGAGCTATTGACTTGGATCAACAACAGGCT
TCAGCTTCATCTCTCTCGCATTGAAGAGGCTGCGTCCGGGGCAGTGCAGT
GTCAAATGTTGGACATGACCTACCCAGGAGTTGTTCCAATGCACAAGGTA
AATTTTGATGCGAAGACCGAATATGACATGATCCAAAATTACAAGGTCCT
GCAGGATGTATTTAACAAGTTGAAAATTGAGAAGCATATTGAAGTCAATA
AGCTTGTCAAAGGCCGACCTTTGGACAACTTAGAGTTCTTACAATGGCTG
AAACGTTACTGTGATTCTGTAAATGGTGGCATCATGAATGAGAACTACAA
TCCTGTGGAGCGTAGATGCAAGGGTGGGAAGGAACGGAGCTCCAGGGGTT
CTCAGAAGATTTCAAAATCACTGCAAACAAACAATATGCATAACGCTGGC
TCTGGTGACATTGGCCACAAGCCCAGGCAAGCAAAGATATATGGAGCTAA
CTCTGCACAAGAGGTTCAAGCATTGTCTAAGGAGATTACAGATCTCAAGC
TCTCTGTGGACCTTTTGGAAGAGGAGAGAGATTTTTACT
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