FC930173

Overview
NameFC930173
Unique NameFC930173
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15113 contig Ccv1_Contig15113:1..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: ATHB7_ARATH (Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana GN=ATHB-7 PE=2 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 2.613e-43
Identity = 94/150 (62.67%), Postives = 112/150 (74.67%), Query Frame = 3
Query:  186 MLDGGEYSPA---AEPYSCMNEIXXXXXXXXXXXXXXXRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKPRREDQSPSERQCCG 626
            M +GGEYSPA   AEP+  M ++               RFSDEQI+SLE+MFE+ETRLEPRKK+QLA+ELGLQPRQVAIWFQNKRARWKSKQLE +YNIL+ N++NLAS+FE+LKKEKQALV +LQ+  E  Q K + E     ERQC G
Sbjct:    1 MTEGGEYSPAMMSAEPFLTMKKMKKSNHNKNNQR----RFSDEQIKSLEMMFESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKSKQLETEYNILRQNYDNLASQFESLKKEKQALVSELQRLKEATQKKTQEE-----ERQCSG 141          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: ATB12_ARATH (Homeobox-leucine zipper protein ATHB-12 OS=Arabidopsis thaliana GN=ATHB-12 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.136e-38
Identity = 77/112 (68.75%), Postives = 98/112 (87.50%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKPRREDQSPSERQCCG 626
            RFS+EQI+SLEL+FE+ETRLEPRKK+Q+A+ELGLQPRQVAIWFQNKRARWK+KQLE++YN L+AN+NNLAS+FE +KKEKQ+LV +LQ+ NE +Q +P+ E       +CCG
Sbjct:   33 RFSEEQIKSLELIFESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWKTKQLEKEYNTLRANYNNLASQFEIMKKEKQSLVSELQRLNEEMQ-RPKEE----KHHECCG 139          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HOX6_ORYSJ (Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. japonica GN=HOX6 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.030e-31
Identity = 69/121 (57.02%), Postives = 90/121 (74.38%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKPRREDQSPSERQCCGQVEGVNSME 653
            RFS+EQI+SLE MF  +T+LEPR+KLQLA+ELGLQPRQVAIWFQNKRARWKSKQLER+Y+ L+ +++ L   +E+LKKEK AL+ QL+K  E+LQ    +   +  +    G V G+   E
Sbjct:   33 RFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYESLKKEKLALIKQLEKLAEMLQEPRGKYGDNAGDDARSGGVAGMKKEE 153          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HOX6_ORYSI (Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. indica GN=HOX6 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.030e-31
Identity = 69/121 (57.02%), Postives = 90/121 (74.38%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKPRREDQSPSERQCCGQVEGVNSME 653
            RFS+EQI+SLE MF  +T+LEPR+KLQLA+ELGLQPRQVAIWFQNKRARWKSKQLER+Y+ L+ +++ L   +E+LKKEK AL+ QL+K  E+LQ    +   +  +    G V G+   E
Sbjct:   33 RFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYESLKKEKLALIKQLEKLAEMLQEPRGKYGDNAGDDARSGGVAGMKKEE 153          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HOX22_ORYSJ (Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. japonica GN=HOX22 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.010e-27
Identity = 61/101 (60.40%), Postives = 79/101 (78.22%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFE-NETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKPRR 590
            RF++EQIRSLE MF  +  +LEPR+K +LA+ELGLQPRQVAIWFQNKRARW+SKQLE DY  L++ ++ L SR E+LK+EK AL +QL +  E L+ +  R
Sbjct:   76 RFTEEQIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRSKYDALHSRVESLKQEKLALTVQLHELRERLREREER 176          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HOX22_ORYSI (Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. indica GN=HOX22 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.010e-27
Identity = 61/101 (60.40%), Postives = 79/101 (78.22%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFE-NETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKPRR 590
            RF++EQIRSLE MF  +  +LEPR+K +LA+ELGLQPRQVAIWFQNKRARW+SKQLE DY  L++ ++ L SR E+LK+EK AL +QL +  E L+ +  R
Sbjct:   76 RFTEEQIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRSKYDALHSRVESLKQEKLALTVQLHELRERLREREER 176          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HOX24_ORYSI (Homeobox-leucine zipper protein HOX24 OS=Oryza sativa subsp. indica GN=HOX24 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.473e-25
Identity = 60/107 (56.07%), Postives = 79/107 (73.83%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFE-NETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKPRREDQSPS 608
            RF++EQ+RSLE  F     +LEPR+K +LA+ELGLQPRQVAIWFQNKRARW+SKQ+E DY  L+A ++ L +R E+L++EK AL  Q+   +EL      R+DQS S
Sbjct:   68 RFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIEHDYAALRAQYDALHARVESLRQEKLALAAQV---DELRGKLNERQDQSGS 171          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HOX24_ORYSJ (Homeobox-leucine zipper protein HOX24 OS=Oryza sativa subsp. japonica GN=HOX24 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.335e-25
Identity = 60/107 (56.07%), Postives = 79/107 (73.83%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFE-NETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKPRREDQSPS 608
            RF++EQ+RSLE  F     +LEPR+K +LA+ELGLQPRQVAIWFQNKRARW+SKQ+E DY  L+A ++ L +R E+L++EK AL  Q+   +EL      R+DQS S
Sbjct:   67 RFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIEHDYAALRAQYDALHARVESLRQEKLALADQV---DELRGKLNERQDQSGS 170          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HAT5_ARATH (Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.547e-24
Identity = 54/121 (44.63%), Postives = 79/121 (65.29%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKPRREDQSPSERQCCGQVEGVNSME 653
            R + EQ+  LE  FE E +LEP +K QLAK+LGLQPRQVA+WFQN+RARWK+KQLERDY++L++ ++ L S ++++  +   L  ++    E LQ K    ++ P      GQV   N ++
Sbjct:   71 RLTTEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSTYDQLLSNYDSIVMDNDKLRSEVTSLTEKLQGKQETANEPP------GQVPEPNQLD 185          
BLAST of FC930173 vs. ExPASy Swiss-Prot
Match: HOX20_ORYSJ (Homeobox-leucine zipper protein HOX20 OS=Oryza sativa subsp. japonica GN=HOX20 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.299e-23
Identity = 53/106 (50.00%), Postives = 79/106 (74.53%), Query Frame = 3
Query:  291 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKPRREDQSPS 608
            R S EQ+R+LE  FE E +LEP +K +LA++LGLQPRQVA+WFQN+RARWK+KQLERDY  L+ +++ L +  +AL+++K AL+ ++++    L+ K   ED + S
Sbjct:   46 RLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRQSYDALRADHDALRRDKDALLAEIKE----LKGKLGDEDAAAS 147          
The following BLAST results are available for this feature:
BLAST of FC930173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
ATHB7_ARATH2.613e-4362.67Homeobox-leucine zipper protein ATHB-7 OS=Arabidop... [more]
ATB12_ARATH1.136e-3868.75Homeobox-leucine zipper protein ATHB-12 OS=Arabido... [more]
HOX6_ORYSJ1.030e-3157.02Homeobox-leucine zipper protein HOX6 OS=Oryza sati... [more]
HOX6_ORYSI1.030e-3157.02Homeobox-leucine zipper protein HOX6 OS=Oryza sati... [more]
HOX22_ORYSJ2.010e-2760.40Homeobox-leucine zipper protein HOX22 OS=Oryza sat... [more]
HOX22_ORYSI2.010e-2760.40Homeobox-leucine zipper protein HOX22 OS=Oryza sat... [more]
HOX24_ORYSI5.473e-2556.07Homeobox-leucine zipper protein HOX24 OS=Oryza sat... [more]
HOX24_ORYSJ9.335e-2556.07Homeobox-leucine zipper protein HOX24 OS=Oryza sat... [more]
HAT5_ARATH3.547e-2444.63Homeobox-leucine zipper protein HAT5 OS=Arabidopsi... [more]
HOX20_ORYSJ2.299e-2350.00Homeobox-leucine zipper protein HOX20 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC34004E10EF PostHarvC1 Citrus clementina cDNA clone C34004E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930173 ID=FC930173; Name=FC930173; organism=Citrus clementina; type=EST; length=669bp
GCCCCGTCAGTCTTAGAAACAAAACCGTGATATGCACACAATAAGCAAAT
ATAATTAAAACATGCACAGAGCACTTGACACAGCTTAAACATCCCCCAAA
AACACAGCCCCCTCTTTGAATGATTTTTTTTTAAAATTAGAATATACAAA
AATTATCTAGTCACCAGCACAAATTCCGACTAAAGATGTTAGATGGGGGC
GAATATTCTCCGGCGGCTGAGCCATACAGCTGCATGAACGAGATCACAAC
AACAACGACAACCAGAAAGAAGAAGTGCAAGAACAAGAAGAGGTTCAGTG
ATGAACAGATCAGATCATTGGAACTCATGTTTGAAAACGAAACTAGACTC
GAGCCTCGAAAGAAGCTGCAGTTGGCTAAAGAACTTGGGTTGCAGCCTCG
TCAGGTTGCAATATGGTTTCAGAATAAGAGAGCTAGATGGAAGTCGAAGC
AGCTTGAACGAGACTACAACATACTTCAAGCCAATTTCAATAACCTTGCT
TCAAGGTTCGAAGCTCTGAAGAAAGAAAAACAAGCCTTGGTTATTCAGTT
GCAAAAGACGAATGAGTTGTTGCAAAATAAGCCACGACGGGAGGATCAGA
GTCCGAGTGAGAGGCAGTGTTGCGGTCAAGTTGAAGGTGTAAACAGCATG
GAGAAGCGATTGGACAATG
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