FC930174

Overview
NameFC930174
Unique NameFC930174
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4804 contig Ccv1_Contig4804:51..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930174 vs. ExPASy Swiss-Prot
Match: SECY_ARATH (Preprotein translocase subunit secY, chloroplastic OS=Arabidopsis thaliana GN=SECY PE=1 SV=2)

HSP 1 Score: 255.758 bits (652), Expect = 1.702e-67
Identity = 137/207 (66.18%), Postives = 156/207 (75.36%), Query Frame = 2
Query:   77 STSRIKTSPRLRNSICRASFSVQRQPTNAISTSTS---KFSSCEGSVFDPLGINPDVCSHLNSTWESFLSLLSPTFESTSGTKREKSSSARGVAAAMEDSSIDFGDXXXXXXXXXXXXXXXYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKRRGEAGRKK 688
            S+SR+++S   + S    S   +R    A S +        S E SVFDPLGINPD  S L+S WESF+SLLSP+FES+SG +R+K SS RGVAAA+EDSSIDFGD               +LALSRLGIYIPLGGVNREAFVGNLDQNS+LSTLD+FSGGGIGRLGICSLGIVPFINAQIVFQLLAQ+ PKLQDLQK+ GEAGRKK
Sbjct:   27 SSSRLRSSSLYKGSFFSVSTKTRRNTCKAKSWNLGLVINSRSSEASVFDPLGINPDETSGLSSIWESFVSLLSPSFESSSGNRRDKPSSGRGVAAAIEDSSIDFGDFFKGPLPGKFLKLLGFLALSRLGIYIPLGGVNREAFVGNLDQNSILSTLDTFSGGGIGRLGICSLGIVPFINAQIVFQLLAQVYPKLQDLQKKEGEAGRKK 233          
BLAST of FC930174 vs. ExPASy Swiss-Prot
Match: SECY_SPIOL (Preprotein translocase subunit secY, chloroplastic OS=Spinacia oleracea GN=SECY PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.349e-64
Identity = 127/194 (65.46%), Postives = 151/194 (77.84%), Query Frame = 2
Query:  122 CRASFSVQRQPTN-----AISTSTSKFSSCEGSVFDPLGINPDVCSHLNSTWESFLSLLSPTFESTSGTKREKSSSARGVAAAMEDSSIDFGDXXXXXXXXXXXXXXXYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKRRGEAGRKK 688
            C+A+F ++ +PT+     ++S+ST+  SSC  SVFDPLGI  D    + S W+  L  +S TFES+SGT++++SSSARGVAAA+EDSSIDFGD                LALSRLGIY+PLGGVNREAFVGNLDQNS +STLDSFSGGGIGRLGICSLGIVPFINAQIVFQLL+Q+ PKLQDLQK+ GEAGRKK
Sbjct:   37 CKATFGLRTKPTSWIAAASLSSSTTTTSSCGSSVFDPLGIEQDNSWGVASAWDGVLKFVSQTFESSSGTRKDRSSSARGVAAAIEDSSIDFGDFFKGPLPGKFLTLLGLLALSRLGIYVPLGGVNREAFVGNLDQNSFISTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLSQVYPKLQDLQKKEGEAGRKK 230          
BLAST of FC930174 vs. ExPASy Swiss-Prot
Match: SECY_PEA (Preprotein translocase subunit secY, chloroplastic OS=Pisum sativum GN=SECY PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 8.764e-56
Identity = 125/223 (56.05%), Postives = 156/223 (69.96%), Query Frame = 2
Query:   23 MVISVREISSSWPLCFNPSTSRIKTSPRLRNSICRASFSVQRQPTNAISTSTSK-FSSCEGSVFDPLGINPDVCSHLNSTWESFLSLLSPTFESTSGTKREKSSSARGVAAAMEDSSIDFGDXXXXXXXXXXXXXXXYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKRRGEAGRKK 688
            M+I+VR+ S +   C + +   I T   L   + R+SF          S+S+S  ++SC+ + FDPLGINPD+ S  +STW + L++    F+++S     +    RGVAAA+EDSSIDFGD               +LALSRLG+YIPLGGVNR+AF+GNLDQNSLL+TLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQ+ PKLQDLQK+ GEAGRKK
Sbjct:    1 MLITVRDPSPTLR-CSSLNRRLIPTKHNLSPRLLRSSFRQHNLSLRLRSSSSSNLYTSCDLANFDPLGINPDLSS--SSTWRNLLTI----FQTSS-----QKDKPRGVAAAIEDSSIDFGDFFNGPLPGKFLKLLGFLALSRLGVYIPLGGVNRDAFLGNLDQNSLLTTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQVYPKLQDLQKKEGEAGRKK 211          
BLAST of FC930174 vs. ExPASy Swiss-Prot
Match: SECY_ORYSJ (Preprotein translocase subunit secY, chloroplastic OS=Oryza sativa subsp. japonica GN=SECY PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.020e-52
Identity = 122/219 (55.71%), Postives = 144/219 (65.75%), Query Frame = 2
Query:   38 REISSSWPLCFNPSTSRIKTSPRLRNSICRASFSVQRQPTNAISTSTSKFSSCEGSVFDPLGINPDVCSH--LNSTWESFLSLLSPTFESTSGTKREKSSSARGVAAAMEDSSIDFGDXXXXXXXXXXXXXXXYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKRRGEAGRKK 688
            R  SS+ P+   P++ R     R R +   ++ + +R+   ++  S        G  FDPLG+  D  S     S   +F  +LSP F S+SG ++EKS   RG AAA+EDSSID GD               YLALSRLGIYIPLGGVNR+AF GNLDQNSLL TLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQ+ PKLQDLQK+ GEAGRKK
Sbjct:   25 RAPSSASPVSGAPASLRF----RGRRAASASASAARRRRGASLPCSPRCALETAGPGFDPLGLYNDGPSRNDTQSPLSNFFGVLSPVFGSSSGGRKEKSYG-RGAAAAIEDSSIDIGDFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNRDAFAGNLDQNSLLGTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQLYPKLQDLQKKEGEAGRKK 238          
BLAST of FC930174 vs. ExPASy Swiss-Prot
Match: SECY_MAIZE (Preprotein translocase subunit secY, chloroplastic OS=Zea mays GN=SECY PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.213e-50
Identity = 108/166 (65.06%), Postives = 124/166 (74.70%), Query Frame = 2
Query:  200 GSVFDPLGINPDVCSHLN-STWESFLSLLSPTFESTSG--TKREKSSSARGVAAAMEDSSIDFGDXXXXXXXXXXXXXXXYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKRRGEAGRKK 688
            G  FDPLG+  +  + L+ S   +F  +++P F S+SG    REK+S  RG AAA+EDSSID GD               +LALSRLG+YIPLGGVNREAF GNLDQNSLL TLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQ+ PKLQDLQ++ GEAGRKK
Sbjct:   71 GPGFDPLGLYEEGSNSLSRSPLSTFFGIMAPVFGSSSGGGASREKASG-RGAAAAIEDSSIDIGDFFKGPLPGKFLKLLGFLALSRLGVYIPLGGVNREAFAGNLDQNSLLGTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQLYPKLQDLQRKEGEAGRKK 235          
BLAST of FC930174 vs. ExPASy Swiss-Prot
Match: SECY_PORYE (Preprotein translocase subunit secY OS=Porphyra yezoensis GN=secY PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.023e-19
Identity = 44/85 (51.76%), Postives = 65/85 (76.47%), Query Frame = 2
Query:  434 LALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKRRGEAGRKK 688
            L L+RLGI+IP+ G++ +AF  ++++N+L++ L+ FSGGG   +GI +LGIVP+IN+ IV QLL +I P L+ LQK  GE GR+K
Sbjct:   18 LVLARLGIFIPVPGIDHDAFYASVEKNTLVNFLNIFSGGGFSTIGIFALGIVPYINSSIVMQLLTKIVPNLEKLQKEEGELGRQK 102          
BLAST of FC930174 vs. ExPASy Swiss-Prot
Match: SECY_PORPU (Preprotein translocase subunit secY OS=Porphyra purpurea GN=secY PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.560e-19
Identity = 44/85 (51.76%), Postives = 65/85 (76.47%), Query Frame = 2
Query:  434 LALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKRRGEAGRKK 688
            L L+RLGI+IP+ G++ +AF  ++++N+L++ L+ FSGGG   +GI +LGIVP+IN+ IV QLL +I P L+ LQK  GE GR+K
Sbjct:   18 LVLARLGIFIPVPGIDHDAFYASVEKNTLVNFLNIFSGGGFSTIGIFALGIVPYINSSIVMQLLTKIIPDLEKLQKEEGELGRQK 102          
BLAST of FC930174 vs. ExPASy Swiss-Prot
Match: SECY_SYNP6 (Preprotein translocase subunit secY OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=secY PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.472e-18
Identity = 46/89 (51.69%), Postives = 62/89 (69.66%), Query Frame = 2
Query:  434 LALSRLGIYIPLGGVNREAFVGNLDQNS----LLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKRRGEAGRKK 688
            L L RLGI+IP+ G++R AF  +L  N+    ++  LD FSGGG+  LG+ +LGI+P+INA I+ QLL    P L+DLQK  GEAGR+K
Sbjct:   35 LILCRLGIFIPVPGIDRVAFSNDLQGNANLGGVIGFLDIFSGGGLSALGVFALGILPYINASIILQLLTAAVPALEDLQKNEGEAGRRK 123          
BLAST of FC930174 vs. ExPASy Swiss-Prot
Match: SECY_SYNE7 (Preprotein translocase subunit secY OS=Synechococcus elongatus (strain PCC 7942) GN=secY PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.472e-18
Identity = 46/89 (51.69%), Postives = 62/89 (69.66%), Query Frame = 2
Query:  434 LALSRLGIYIPLGGVNREAFVGNLDQNS----LLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKRRGEAGRKK 688
            L L RLGI+IP+ G++R AF  +L  N+    ++  LD FSGGG+  LG+ +LGI+P+INA I+ QLL    P L+DLQK  GEAGR+K
Sbjct:   35 LILCRLGIFIPVPGIDRVAFSNDLQGNANLGGVIGFLDIFSGGGLSALGVFALGILPYINASIILQLLTAAVPALEDLQKNEGEAGRRK 123          
BLAST of FC930174 vs. ExPASy Swiss-Prot
Match: SECY_SYNY3 (Preprotein translocase subunit secY OS=Synechocystis sp. (strain PCC 6803) GN=secY PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17
Identity = 42/85 (49.41%), Postives = 62/85 (72.94%), Query Frame = 2
Query:  434 LALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKRRGEAGRKK 688
            L L R+GI+IP+  ++R+AF   ++ NS++  L+ F+GGG+  +GI +LGI+P+INA I+ QLL    P L+DLQK  GEAGR+K
Sbjct:   35 LILVRVGIFIPVPDIDRQAFSQAINDNSVIGFLNIFTGGGLSTVGIFALGILPYINASIIMQLLTAAIPALEDLQKNEGEAGRRK 119          
The following BLAST results are available for this feature:
BLAST of FC930174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
SECY_ARATH1.702e-6766.18Preprotein translocase subunit secY, chloroplastic... [more]
SECY_SPIOL1.349e-6465.46Preprotein translocase subunit secY, chloroplastic... [more]
SECY_PEA8.764e-5656.05Preprotein translocase subunit secY, chloroplastic... [more]
SECY_ORYSJ2.020e-5255.71Preprotein translocase subunit secY, chloroplastic... [more]
SECY_MAIZE4.213e-5065.06Preprotein translocase subunit secY, chloroplastic... [more]
SECY_PORYE5.023e-1951.76Preprotein translocase subunit secY OS=Porphyra ye... [more]
SECY_PORPU6.560e-1951.76Preprotein translocase subunit secY OS=Porphyra pu... [more]
SECY_SYNP69.472e-1851.69Preprotein translocase subunit secY OS=Synechococc... [more]
SECY_SYNE79.472e-1851.69Preprotein translocase subunit secY OS=Synechococc... [more]
SECY_SYNY32.110e-1749.41Preprotein translocase subunit secY OS=Synechocyst... [more]

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Properties
Property NameValue
Genbank descriptionC34004E11EF PostHarvC1 Citrus clementina cDNA clone C34004E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930174 ID=FC930174; Name=FC930174; organism=Citrus clementina; type=EST; length=706bp
GAGATAAGACTTGAAAGGAAAAATGGTGATAAGTGTCAGAGAAATTTCAT
CCTCTTGGCCTCTCTGCTTCAATCCTTCTACTTCCAGGATAAAGACATCT
CCCAGACTCAGAAACTCAATATGCCGAGCCAGTTTTTCTGTTCAAAGACA
ACCCACCAACGCCATCTCTACCAGCACCTCCAAATTTAGCAGTTGTGAGG
GTTCAGTTTTTGATCCCTTGGGTATCAATCCAGATGTATGTTCTCATTTA
AATAGCACTTGGGAAAGTTTTCTAAGCTTGTTATCACCAACATTTGAGAG
CACATCTGGAACCAAAAGGGAAAAATCTTCTTCAGCTCGAGGAGTGGCAG
CTGCAATGGAGGACAGTTCAATTGATTTTGGGGACTTCTTTAAAGGCCCA
TTACCCGGAAAATTTCTCAAGCTGTTGGGGTACTTGGCCCTATCACGACT
TGGAATATATATACCTCTCGGTGGGGTTAATCGAGAAGCTTTTGTAGGAA
ATTTGGATCAGAACAGTTTATTGAGCACGTTGGATTCATTTTCTGGAGGA
GGCATTGGTAGACTTGGAATATGCTCTCTTGGTATTGTTCCCTTTATAAA
TGCACAGATCGTGTTTCAACTTCTTGCCCAAATTAATCCCAAGTTGCAAG
ATCTTCAGAAAAGAAGAGGTGAAGCGGGAAGAAAGAAGTGCTTCAGTACA
CCGATA
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