FC930188

Overview
NameFC930188
Unique NameFC930188
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ1_DROME (DnaJ protein homolog 1 OS=Drosophila melanogaster GN=DnaJ-1 PE=1 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 3.136e-20
Identity = 50/95 (52.63%), Postives = 66/95 (69.47%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDE---KGSPGFDAGHPGNQGGYTYFTSGGP 453
            D YK+LG+ER AS  EI+KA+ KL+L+YHPDKNK+  A+E+F EI  AY++LSD++KR  +D YG++    G PG D G  G  G YTY   G P
Sbjct:    4 DFYKILGLERKASDDEIKKAYRKLALKYHPDKNKSPQAEERFKEIAEAYEVLSDKKKRDIFDNYGEDGLKGGQPGPDGG--GQPGAYTYQFHGDP 96          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_CALS8 (Chaperone protein dnaJ OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.556e-19
Identity = 47/90 (52.22%), Postives = 63/90 (70.00%), Query Frame = 1
Query:  166 AKTVDPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYT 432
            A+  D Y++LGV RNA+Q EI++A+ +L+ QYHPD N  NK A+EKF EIN AY++LSD EKR+KYD +G     P + A   G  GG+T
Sbjct:    2 AQKKDYYEILGVPRNATQEEIKRAYRRLAKQYHPDANPGNKEAEEKFKEINEAYEVLSDPEKRRKYDQFGHAAFDPTYGAQGGGFSGGFT 91          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_PEDPA (Chaperone protein dnaJ OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19
Identity = 48/120 (40.00%), Postives = 72/120 (60.00%), Query Frame = 1
Query:  166 AKTVDPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYFTSG---------GPGQSQFTSRPGEWQNM 498
            A   D Y +LGV ++AS  EI+KA+ KLS +YHPD NK   A++KF ++N AY++L D +KR +YD +G    + GF  G  G QGG++ F  G         G GQ Q  ++P + +++
Sbjct:    2 AANKDYYDILGVSKDASDDEIKKAYRKLSKKYHPDINKAPDAEQKFKDVNEAYEVLGDSQKRAQYDQFGSADPNAGFGGGGFGGQGGFSDFGGGFEDIFGSFFGGGQRQSPNQPRQGEDL 121          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_LACLA (Chaperone protein dnaJ OS=Lactococcus lactis subsp. lactis GN=dnaJ PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19
Identity = 45/95 (47.37%), Postives = 62/95 (65.26%), Query Frame = 1
Query:  184 YKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYFTSGGPGQSQF 468
            Y+ LGV++NASQ EI+KA+ K+S +YHPD NK + A+EK+ E+  AY+ LSDE+KR  YD YG+   + GF  G  G   G++ F  G  G   F
Sbjct:    7 YERLGVDKNASQDEIKKAYRKMSKKYHPDLNKEEGAEEKYKEVQEAYETLSDEQKRAAYDQYGEAGANGGFGGGGFGGASGFSGFGGGSGGFGGF 101          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_MYCGA (Chaperone protein dnaJ OS=Mycoplasma gallisepticum GN=dnaJ PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19
Identity = 47/90 (52.22%), Postives = 64/90 (71.11%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDE-KGSPGFDAGHPGNQGGYTYFTS 444
            D Y++L V R+A+Q++I+KAF KL+++YHPD+NK+  A+EKF E+N AY++LSDEEKRK YD YG E   + GF   H G    Y  F S
Sbjct:    6 DYYEILEVSRSATQQDIKKAFRKLAMKYHPDRNKDSDAEEKFKEVNEAYEVLSDEEKRKLYDTYGHEGLNASGF---HQGGFNPYDVFNS 92          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNJB5_MOUSE (DnaJ homolog subfamily B member 5 OS=Mus musculus GN=Dnajb5 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.529e-19
Identity = 47/99 (47.47%), Postives = 63/99 (63.64%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYFTSGGPGQSQFTS 474
            D YK+LG+   A++ EI+KA+ K++L+YHPDKNK   A+EKF EI  AYD+LSD +KR  YD YG+E    G   G  G  GG  ++T  G   + F S
Sbjct:    4 DYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKRSLYDQYGEEGLKTG--GGSSGGSGGSFHYTFHGDPHATFAS 100          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNJA3_HUMAN (DnaJ homolog subfamily A member 3, mitochondrial OS=Homo sapiens GN=DNAJA3 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.915e-19
Identity = 49/93 (52.69%), Postives = 67/93 (72.04%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYFTSGGP 453
            D Y++LGV RNASQ+EI+KA+++L+ +YHPD NK +  A+EKF+++  AY++LSDE KRK+YD Y    GS GFD G  G+Q  Y     GGP
Sbjct:   93 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAY----GSAGFDPGASGSQHSY---WKGGP 178          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_WOLTR (Chaperone protein dnaJ OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.915e-19
Identity = 47/75 (62.67%), Postives = 57/75 (76.00%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFD 399
            D YK+LGV+RNAS  EI+KA+ KL+L+YHPD+N  NK A+EKF EI  AY++LSD EKR  YD YG E  S GFD
Sbjct:    5 DYYKLLGVDRNASTDEIKKAYKKLALKYHPDRNPGNKEAEEKFKEITAAYEVLSDSEKRAGYDRYGHEGASGGFD 79          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DJC16_PONAB (DnaJ homolog subfamily C member 16 OS=Pongo abelii GN=DNAJC16 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.915e-19
Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYF 438
            DPYKVLGV R ASQ +I+KA+ KL+ ++HPDKNK+  A++KF +I+ AY+ILS+EEKR  YD YGD   + G+       +  + +F
Sbjct:   29 DPYKVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDKFIQISKAYEILSNEEKRSNYDQYGDAGENQGYQKQQQQREYRFRHF 115          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_LISW6 (Chaperone protein dnaJ OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.318e-18
Identity = 50/115 (43.48%), Postives = 70/115 (60.87%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPG--NQGGYTYFTS------GGPGQSQFTSRPGEWQNM 498
            D Y+VLG+ ++AS  EI+KA+ KLS QYHPD NK   A EKF EI+ AY++LSD +KR +YD YG    + GF  G  G  + GG++ F        GG G+ Q  + P +  ++
Sbjct:    5 DYYEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEVLSDSQKRAQYDQYGHVDPNQGFGGGAGGGFSGGGFSGFEDIFDTFFGGGGRQQDPNAPRQGSDL 119          
The following BLAST results are available for this feature:
BLAST of FC930188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ1_DROME3.136e-2052.63DnaJ protein homolog 1 OS=Drosophila melanogaster ... [more]
DNAJ_CALS81.556e-1952.22Chaperone protein dnaJ OS=Caldicellulosiruptor sac... [more]
DNAJ_PEDPA2.033e-1940.00Chaperone protein dnaJ OS=Pediococcus pentosaceus ... [more]
DNAJ_LACLA2.033e-1947.37Chaperone protein dnaJ OS=Lactococcus lactis subsp... [more]
DNAJ_MYCGA2.655e-1952.22Chaperone protein dnaJ OS=Mycoplasma gallisepticum... [more]
DNJB5_MOUSE4.529e-1947.47DnaJ homolog subfamily B member 5 OS=Mus musculus ... [more]
DNJA3_HUMAN5.915e-1952.69DnaJ homolog subfamily A member 3, mitochondrial O... [more]
DNAJ_WOLTR5.915e-1962.67Chaperone protein dnaJ OS=Wolbachia sp. subsp. Bru... [more]
DJC16_PONAB5.915e-1949.43DnaJ homolog subfamily C member 16 OS=Pongo abelii... [more]
DNAJ_LISW61.318e-1843.48Chaperone protein dnaJ OS=Listeria welshimeri sero... [more]

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Properties
Property NameValue
Genbank descriptionC34004G01EF PostHarvC1 Citrus clementina cDNA clone C34004G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930188 ID=FC930188; Name=FC930188; organism=Citrus clementina; type=EST; length=669bp
GACCCCGTCGCTATTGTTATTAATTGTGATCTTTTTCATAACGCACTTCA
CTCCGTTCAATAATAAACCTCTAAAATCTGTAGTGAGATGCAAGGTGCAA
AAATGAAGGTTCGTTTCGCACTATCGATTTTTCTGTTTTCAACGCTTTTG
ATCTTCAACGCGAAAGCCAAAACCGTCGATCCGTACAAGGTTCTTGGTGT
TGAGCGGAATGCGAGCCAGCGTGAGATTCAAAAAGCTTTCCACAAGCTCT
CTCTTCAATATCACCCGGACAAGAACAAAAATAAGGCCGCTCAGGAGAAG
TTCGCTGAGATTAATAATGCATATGATATTTTATCTGATGAAGAGAAGAG
GAAAAAATATGATTTGTATGGGGATGAGAAGGGCAGTCCTGGATTTGATG
CTGGGCATCCTGGGAATCAAGGTGGGTATACATACTTCACAAGTGGTGGA
CCGGGACAAAGCCAGTTTACCTCTAGACCTGGTGAATGGCAGAATATGGG
GGGGCAGGGAAGTTCCCGGAGCTTTTCGTTTTCCTTTGGCGGTACTGGTG
GTTCAAGTTCATTTGGTTTTGGTCTAGATGATATCTTCTCTGACTTTTTT
GGCAGTAGTTTTGGAGGAGGACGCCAATTTGGTGGTTTTAGTGGTTCAAC
TGGTTCTCAGTCTCAATCT
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