FC930198

Overview
NameFC930198
Unique NameFC930198
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930198 vs. ExPASy Swiss-Prot
Match: PLZ12_LUPPO (Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.770e-14
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 2
Query:  527 LDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAA 715
            ++LD  FEQK ++AK+V EELEK M  YGY I   L+VDI PD+ V+RAMNEINAA R++LA+
Sbjct:    1 MNLDDLFEQKGEVAKSVLEELEKVMGEYGYNIEHILMVDIIPDDSVRRAMNEINAAQRMQLAS 63          
The following BLAST results are available for this feature:
BLAST of FC930198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PLZ12_LUPPO3.770e-1460.32Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12 PE... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34004G11EF PostHarvC1 Citrus clementina cDNA clone C34004G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930198 ID=FC930198; Name=FC930198; organism=Citrus clementina; type=EST; length=715bp
GATGGTTTGAATTCTCTTGTGTCTAGCACCCAATAGAATGAAATAAATTA
TTTCTTTTATATTTATTACTCTTTATTTTTTTTAAAGAGTCAATTTTTGT
TTGTATATCCGGCCAGTTGGTACCTTTCGGATGAAATCTAGAAATTGTCG
TGGTTTGGTTGATGATTCTTCTAATGAGCTGTATAATCAGAAAATGGGAC
AAGCTTTAGGTTGTATTCAGGTGGATCAGTCAACTGTGGCCATCAGGGAA
ACCTTTGGGAAGTTTGATGAGGTGCTTGAACCTGGCTGTCACTGTTTGCC
TTGGTGTTTGGGGAGCCAAGTAGCAGGTCAACTCTCATTACGTGTTCAGC
AGTTGGATGTTCGATGTGAAACAAAAACCAAGGACAATGTGTTTGTTAAT
GTGGTTGCTTCCGTTCAATACCGAGCCTTGGCAGAGAAGGCTTCAGATGC
CTTTTATAAGCTCAGCAATACTAGATCGCAGATCCAAGCGTATGTCTTTG
ATGTTATTAGGGCAAGTGTACCAAAGCTGGACCTGGATGCAACCTTTGAG
CAGAAGAACGACATAGCCAAAGCTGTGGAAGAGGAACTCGAAAAGGCCAT
GTCTCATTATGGTTATGAGATAGTTCAGACTCTCATCGTAGATATTGAAC
CAGATGAACATGTGAAGAGAGCAATGAATGAGATCAATGCAGCGGCCAGA
TTGAGGCTGGCTGCA
back to top