FC930201

Overview
NameFC930201
Unique NameFC930201
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930201 vs. ExPASy Swiss-Prot
Match: RL74_ARATH (60S ribosomal protein L7-4 OS=Arabidopsis thaliana GN=RPL7D PE=2 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.354e-78
Identity = 153/215 (71.16%), Postives = 169/215 (78.60%), Query Frame = 1
Query:   94 MAEVEAKAPVPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQVIXXXXXXXXXXXXIWINKILFFP*F*EKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDKLIIEKALGKFGIICMEDLIH 738
            M E E+K  VPESVLKK+KR EEWALAKKQELE +KK   E RKLI+NRAKQY+KE+ E+                           E+ LIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKAT+NML RVEPYVTYGYPNLKSV+ELIYKRG+GKL+ QR ALTD  I+++ LGK GIIC+EDLIH
Sbjct:    1 MTEAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEK---------------------------ERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIH 188          
BLAST of FC930201 vs. ExPASy Swiss-Prot
Match: RL72_ARATH (60S ribosomal protein L7-2 OS=Arabidopsis thaliana GN=RPL7B PE=1 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.554e-77
Identity = 152/212 (71.70%), Postives = 167/212 (78.77%), Query Frame = 1
Query:  103 VEAKAPVPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQVIXXXXXXXXXXXXIWINKILFFP*F*EKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDKLIIEKALGKFGIICMEDLIH 738
            VE+K  VPESVLKK+KR EEWAL KKQ +E +KK   E+RKLI+ RA+QY+KE+AE+                           EK LI LKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNML RVEPYVTYG+PNLKSV+ELIYKRGYGKL+ QRIALTD  I+E+ALGK GIIC EDLIH
Sbjct:    2 VESKVVVPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEK---------------------------EKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTEDLIH 186          
BLAST of FC930201 vs. ExPASy Swiss-Prot
Match: RL73_ARATH (60S ribosomal protein L7-3 OS=Arabidopsis thaliana GN=RPL7C PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.401e-75
Identity = 149/211 (70.62%), Postives = 166/211 (78.67%), Query Frame = 1
Query:  106 EAKAPVPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQVIXXXXXXXXXXXXIWINKILFFP*F*EKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDKLIIEKALGKFGIICMEDLIH 738
            E+K  VPESVLKK KR EEWALAKK E   +KK  +E+RKLI+ RA+QYAKE+AE+                           +  LI+LKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKAT+NML RVEPYVTYGYPNLKSV+ELIYKRGYGKL+ QRIALTD  I+++ALGK GIIC+EDLIH
Sbjct:    3 ESKVVVPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEK---------------------------DNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIH 186          
BLAST of FC930201 vs. ExPASy Swiss-Prot
Match: RL7_NEUCR (60S ribosomal protein L7 OS=Neurospora crassa GN=rpl-7 PE=3 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 3.475e-50
Identity = 106/206 (51.46%), Postives = 137/206 (66.50%), Query Frame = 1
Query:  121 VPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQVIXXXXXXXXXXXXIWINKILFFP*F*EKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDKLIIEKALGKFGIICMEDLIH 738
            VPE++LKK+K  E+    ++ E+E  K    E R +I+ RA+ Y KE+ +                            E+  I+L+R AK  G F++  EAKL+F+IRI+GIN I PK +KILQLLRL QI NGVF++V KAT  M+  VEP+V YGYPNLKSV+ELIYKRGYGK++KQR+ALTD  IIE+ LGK+GIICMEDLIH
Sbjct:   13 VPETLLKKRKSQEKARAERQAEIEKKKAANKEKRAVIFKRAETYVKEYRDV---------------------------EREKIRLQRAAKQDGSFHIPAEAKLIFLIRIKGINKIPPKPRKILQLLRLLQINNGVFVRVTKATAEMIKIVEPWVAYGYPNLKSVKELIYKRGYGKVNKQRVALTDNSIIEENLGKYGIICMEDLIH 191          
BLAST of FC930201 vs. ExPASy Swiss-Prot
Match: RL7_MACFA (60S ribosomal protein L7 OS=Macaca fascicularis GN=RPL7 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.928e-50
Identity = 105/215 (48.84%), Postives = 139/215 (64.65%), Query Frame = 1
Query:   97 AEVEAKAP-VPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQVIXXXXXXXXXXXXIWINKILFFP*F*EKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDKLIIEKALGKFGIICMEDLIH 738
            AE + K P VPE++ KK++   E  + + ++    K  +   RKLIY +AK Y KE+ +                             +  I++ R A+  G FYV  E KL F+IRIRGIN + PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK++K+RIALTD  +I ++LGK+GIICMEDLIH
Sbjct:    4 AEEKKKVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMY---------------------------RTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIH 191          
BLAST of FC930201 vs. ExPASy Swiss-Prot
Match: RL7_MOUSE (60S ribosomal protein L7 OS=Mus musculus GN=Rpl7 PE=2 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 7.742e-50
Identity = 108/216 (50.00%), Postives = 139/216 (64.35%), Query Frame = 1
Query:  103 VEAKAPVPESVLKKQKRN----EEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQVIXXXXXXXXXXXXIWINKILFFP*F*EKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDKLIIEKALGKFGIICMEDLIH 738
            ++ K P     LKK++RN    +   L KK  L+T +K +   RKLIY +AK Y KE+ +                             +  I++ R A+  G FYV  E KL F+IRIRGIN + PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK++K+RIALTD  +I ++LGKFGIICMEDLIH
Sbjct:   29 LKKKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLRKAR---RKLIYEKAKHYHKEYRQMY---------------------------RTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGKFGIICMEDLIH 214          
BLAST of FC930201 vs. ExPASy Swiss-Prot
Match: RL7_BOVIN (60S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.742e-50
Identity = 105/214 (49.07%), Postives = 138/214 (64.49%), Query Frame = 1
Query:  100 EVEAKAP-VPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQVIXXXXXXXXXXXXIWINKILFFP*F*EKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDKLIIEKALGKFGIICMEDLIH 738
            E + K P VPE++ KK+K   E  + + ++    K  +   RKLIY +AK Y KE+ +                             +  I++ R A+  G FYV  E KL F+IRIRGIN + PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK++K+RIALTD  +I ++LGK+GIICMEDLIH
Sbjct:    6 EKKKKVPAVPETLKKKRKNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMY---------------------------RTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIH 192          
BLAST of FC930201 vs. ExPASy Swiss-Prot
Match: RL7_RAT (60S ribosomal protein L7 OS=Rattus norvegicus GN=Rpl7 PE=1 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.321e-49
Identity = 107/213 (50.23%), Postives = 137/213 (64.32%), Query Frame = 1
Query:  112 KAPVPESVLKKQKRN----EEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQVIXXXXXXXXXXXXIWINKILFFP*F*EKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDKLIIEKALGKFGIICMEDLIH 738
            K P     LKK++RN    +   L KK  L+T +K +   RKLIY +AK Y KE+ +                             +  I++ R A+  G FYV  E KL F+IRIRGIN + PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK++K+RIALTD  ++ ++LGKFGIICMEDLIH
Sbjct:   22 KVPAVPETLKKKRRNFAELKVKRLRKKFALKTLRKAR---RKLIYEKAKHYHKEYRQMY---------------------------RTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLVARSLGKFGIICMEDLIH 204          
BLAST of FC930201 vs. ExPASy Swiss-Prot
Match: RL7_PONAB (60S ribosomal protein L7 OS=Pongo abelii GN=RPL7 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.725e-49
Identity = 104/214 (48.60%), Postives = 138/214 (64.49%), Query Frame = 1
Query:  100 EVEAKAP-VPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQVIXXXXXXXXXXXXIWINKILFFP*F*EKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDKLIIEKALGKFGIICMEDLIH 738
            E + K P VPE++ KK++   E  + + ++    K  +   RKLIY +AK Y KE+ +                             +  I++ R A+  G FYV  E KL F+IRIRGIN + PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK++K+RIALTD  +I ++LGK+GIICMEDLIH
Sbjct:    5 EEKKKVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMY---------------------------RTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIH 191          
BLAST of FC930201 vs. ExPASy Swiss-Prot
Match: RL7_YARLI (60S ribosomal protein L7 OS=Yarrowia lipolytica GN=RPL7 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.253e-49
Identity = 102/206 (49.51%), Postives = 137/206 (66.50%), Query Frame = 1
Query:  121 VPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQVIXXXXXXXXXXXXIWINKILFFP*F*EKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDKLIIEKALGKFGIICMEDLIH 738
            VPE++LKK+K  ++   AK+      K    E  K+I++RA++Y KE+ E                            E+  I+L+REAKL G FYV  E KL+F+IRI+GI+ + PK +K+LQLLRL QI NGVF+++ KAT  +L  VEPY+ +GYPNL SVR+L+YKRGYGK++KQRI L+D  IIE+ALGK+GIICMEDLIH
Sbjct:   14 VPETLLKKRKNADQIRAAKEAAAAEKKAANAEKDKVIFSRAEKYVKEYREA---------------------------EREQIRLRREAKLNGTFYVPAEPKLVFVIRIKGISKMAPKPRKVLQLLRLHQINNGVFVRITKATAELLRIVEPYIAFGYPNLASVRQLVYKRGYGKVNKQRIPLSDNAIIEEALGKYGIICMEDLIH 192          
The following BLAST results are available for this feature:
BLAST of FC930201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL74_ARATH1.354e-7871.1660S ribosomal protein L7-4 OS=Arabidopsis thaliana... [more]
RL72_ARATH2.554e-7771.7060S ribosomal protein L7-2 OS=Arabidopsis thaliana... [more]
RL73_ARATH1.401e-7570.6260S ribosomal protein L7-3 OS=Arabidopsis thaliana... [more]
RL7_NEUCR3.475e-5051.4660S ribosomal protein L7 OS=Neurospora crassa GN=r... [more]
RL7_MACFA5.928e-5048.8460S ribosomal protein L7 OS=Macaca fascicularis GN... [more]
RL7_MOUSE7.742e-5050.0060S ribosomal protein L7 OS=Mus musculus GN=Rpl7 P... [more]
RL7_BOVIN7.742e-5049.0760S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=... [more]
RL7_RAT1.321e-4950.2360S ribosomal protein L7 OS=Rattus norvegicus GN=R... [more]
RL7_PONAB1.725e-4948.6060S ribosomal protein L7 OS=Pongo abelii GN=RPL7 P... [more]
RL7_YARLI2.253e-4949.5160S ribosomal protein L7 OS=Yarrowia lipolytica GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34004H02EF PostHarvC1 Citrus clementina cDNA clone C34004H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930201 ID=FC930201; Name=FC930201; organism=Citrus clementina; type=EST; length=738bp
GACTCTTATATAACTTGCTCAAAGAAGCTCTCTTATTTGGTTCTTCCGCA
GTCCGATCTTCTACGGCCAGGGGACACGACACTTAAACTCTAGATGGCTG
AAGTAGAAGCCAAGGCGCCAGTTCCAGAGTCTGTCTTGAAGAAGCAGAAG
AGGAATGAGGAATGGGCTTTGGCAAAGAAGCAGGAGCTTGAAACTTCCAA
GAAGAACAAGCTCGAGAGTAGGAAGCTGATTTACAATAGGGCTAAGCAGT
ATGCAAAGGAGTTTGCTGAGCAGGTGATCGTTGTAAACTTCTTCAAAGTT
TAATTTTATTACTATATTTGGATTAACAAGATTCTTTTTTTCCCCTAATT
TTAGGAAAAGGTGTTGATTCAATTGAAGCGTGAAGCTAAATTGAAAGGAG
GGTTTTATGTTGACCCTGAAGCTAAGCTTTTGTTTATCATCCGTATCCGT
GGTATCAATGCCATTGACCCAAAGACAAAGAAGATTTTGCAGCTTTTACG
TTTAAGACAGATCTTCAATGGAGTTTTTCTTAAAGTGAACAAAGCTACCA
TGAACATGCTTCATAGGGTTGAACCTTACGTCACCTATGGATACCCCAAT
TTGAAGAGTGTTAGGGAGCTCATTTACAAGAGGGGATATGGAAAGCTAGA
TAAGCAGAGAATTGCTTTGACTGATAAACTCATTATTGAGAAGGCTTTGG
GCAAGTTCGGTATCATCTGCATGGAAGACCTGATCCAT
back to top