FC930204

Overview
NameFC930204
Unique NameFC930204
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3542 contig Ccv1_Contig3542:44..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930204 vs. ExPASy Swiss-Prot
Match: G6PD6_ARATH (Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform 2 OS=Arabidopsis thaliana GN=ACG12 PE=1 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 1.869e-90
Identity = 165/207 (79.71%), Postives = 185/207 (89.37%), Query Frame = 3
Query:   63 MGSGQWIMEKRSSLRNDSFSRDNDNVPETGCLSIIVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYARTKISDDELRNRIRGYLINDKSAPGQSEQVSEFLQLIKYVSGSYDTEEGFQLLDKEISAHESSKNSLEGSSRRLFYFALPPSVYPSVSRMIKKCCMNRSDLGGWTRIVVEKPFGKDLDSSEKLSAQIGELFEEPQ 683
            MGSGQW +EKRS+ RNDSF R+   VPETGCLSIIVLGASGDLAKKKTFPALFNLYRQGFL  +EVHIFGYARTKISD+ELR+RIRGYL+++K+A  Q+E +S+FLQLIKYVSG YD EEGFQ LDK IS HE SKNS EGSSRRLFY ALPPSVYPSV +MIK CCMN+SDLGGWTRIVVEKPFGKDL+S+E+LS+QIGELF+E Q
Sbjct:    1 MGSGQWHVEKRSTFRNDSFVREYGIVPETGCLSIIVLGASGDLAKKKTFPALFNLYRQGFLNPDEVHIFGYARTKISDEELRDRIRGYLVDEKNAE-QAEALSKFLQLIKYVSGPYDAEEGFQRLDKAISEHEISKNSTEGSSRRLFYLALPPSVYPSVCKMIKTCCMNKSDLGGWTRIVVEKPFGKDLESAEQLSSQIGELFDESQ 206          
BLAST of FC930204 vs. ExPASy Swiss-Prot
Match: G6PD_SOLTU (Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform OS=Solanum tuberosum GN=G6PDH PE=2 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.212e-89
Identity = 167/205 (81.46%), Postives = 179/205 (87.32%), Query Frame = 3
Query:   69 SGQWIMEKRSSLRNDSFSRDNDNVPETGCLSIIVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYARTKISDDELRNRIRGYLINDKSAPGQSEQVSEFLQLIKYVSGSYDTEEGFQLLDKEISAHESSKNSLEGSSRRLFYFALPPSVYPSVSRMIKKCCMNRSDLGGWTRIVVEKPFGKDLDSSEKLSAQIGELFEEPQ 683
            +  W +EKR S+RNDSF RDNDN+PETGCLSIIVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYARTKISDD+LR+RIRGYL   K   G+   VSEFLQLIKYVSGSYD+ EGF  LDK IS HE SKNS EGSSRRLFYFALPPSVYPSV RMIK  CMN+SDLGGWTR VVEKPFGKDL SSE+LS+QIGELF+EPQ
Sbjct:    2 AASWCIEKRGSIRNDSF-RDNDNIPETGCLSIIVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYARTKISDDDLRSRIRGYLSQGKENEGE---VSEFLQLIKYVSGSYDSAEGFTSLDKAISEHEFSKNSTEGSSRRLFYFALPPSVYPSVCRMIKSYCMNKSDLGGWTRTVVEKPFGKDLASSEQLSSQIGELFDEPQ 202          
BLAST of FC930204 vs. ExPASy Swiss-Prot
Match: G6PD5_ARATH (Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform 1 OS=Arabidopsis thaliana GN=ACG9 PE=2 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 1.695e-83
Identity = 151/207 (72.95%), Postives = 181/207 (87.44%), Query Frame = 3
Query:   63 MGSGQWIMEKRSSLRNDSFSRDNDNVPETGCLSIIVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYARTKISDDELRNRIRGYLINDKSAPGQSEQVSEFLQLIKYVSGSYDTEEGFQLLDKEISAHESSKNSLEGSSRRLFYFALPPSVYPSVSRMIKKCCMNRSDLGGWTRIVVEKPFGKDLDSSEKLSAQIGELFEEPQ 683
            MGSGQW MEKRS+L+NDSF ++ + V ETG LSIIVLGASGDLAKKKTFPALFNL+ QGFL  +EVHIFGYAR+KI+D+ELR++IRGYL+++K+A  ++E +S+FL+LIKYVSG YD+EEGF+ LDK I  HE SK + EGSSRRLFY ALPPSVYP VS+MIK  C N+SDLGGWTRIVVEKPFGKDL+S+E+LS+QIG LFEEPQ
Sbjct:    1 MGSGQWHMEKRSTLKNDSFVKEYNPVTETGSLSIIVLGASGDLAKKKTFPALFNLFHQGFLNPDEVHIFGYARSKITDEELRDKIRGYLVDEKNASKKTEALSKFLKLIKYVSGPYDSEEGFKRLDKAILEHEISKKTAEGSSRRLFYLALPPSVYPPVSKMIKAWCTNKSDLGGWTRIVVEKPFGKDLESAEQLSSQIGALFEEPQ 207          
BLAST of FC930204 vs. ExPASy Swiss-Prot
Match: G6PD_MEDSA (Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 9.622e-79
Identity = 147/209 (70.33%), Postives = 177/209 (84.69%), Query Frame = 3
Query:   63 MGSGQWIMEKRSSLRNDS-FSRDNDNVPETGCLSIIVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYARTKISDDELRNRIRGYLINDKSA-PGQSEQVSEFLQLIKYVSGSYDTEEGFQLLDKEISAHESSKNSLEGSSRRLFYFALPPSVYPSVSRMIKKCCMNRSDLGGWTRIVVEKPFGKDLDSSEKLSAQIGELFEEPQ 683
            MG+ +W +E+R S+  +S  +R+   V ETG LSI+VLGASGDLAKKKTFPALF+LY+Q  L  +EVHIFGYAR+KISDDELRN++R YL+ +K A P Q + VS+FLQL+KYVSG YD+E+GF+LLDKEIS HE  KNS EGSSRRLFY ALPPSVYPSV +MIK CCMN+SDLGGWTR+VVEKPFG+DL+S+E+LS QIGELFEEPQ
Sbjct:    1 MGTNEWHVERRDSIGTESPVARE---VLETGTLSIVVLGASGDLAKKKTFPALFHLYKQELLPPDEVHIFGYARSKISDDELRNKLRSYLVPEKGASPKQLDDVSKFLQLVKYVSGPYDSEDGFRLLDKEISEHEYLKNSKEGSSRRLFYLALPPSVYPSVCKMIKTCCMNKSDLGGWTRVVVEKPFGRDLESAEELSTQIGELFEEPQ 206          
BLAST of FC930204 vs. ExPASy Swiss-Prot
Match: G6PD_YEAST (Glucose-6-phosphate 1-dehydrogenase OS=Saccharomyces cerevisiae GN=ZWF1 PE=1 SV=4)

HSP 1 Score: 142.124 bits (357), Expect = 2.743e-33
Identity = 81/177 (45.76%), Postives = 118/177 (66.67%), Query Frame = 3
Query:  162 IIVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYARTKIS-DDELRNRIRGYLINDKSAPGQSE--QVSEFLQLIKYVSGSYDTEEGFQLLDKEISAHESSKNSLEGSSRRLFYFALPPSVYPSVSRMIKKCCMNRSDLGGWTRIVVEKPFGKDLDSSEKLSAQIGELFEEPQ 683
            I V GASGDLAKKKTFPALF L+R+G+L  +   IFGYAR+K+S +++L++R+  +L   K   G+++  +V +F +++ Y+SG+YDT+EGF  L  +I   E S N       RLFY ALPPSV+ +V++ IK      +   G TR++VEKPFG DL S+ +L   +G LF+E +
Sbjct:   14 ISVFGASGDLAKKKTFPALFGLFREGYLDPS-TKIFGYARSKLSMEEDLKSRVLPHL---KKPHGEADDSKVEQFFKMVSYISGNYDTDEGFDELRTQIEKFEKSAN--VDVPHRLFYLALPPSVFLTVAKQIKSRVYAEN---GITRVIVEKPFGHDLASARELQKNLGPLFKEEE 181          
BLAST of FC930204 vs. ExPASy Swiss-Prot
Match: G6PD_MACRO (Glucose-6-phosphate 1-dehydrogenase OS=Macropus robustus GN=G6PD PE=2 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 2.971e-32
Identity = 76/174 (43.68%), Postives = 109/174 (62.64%), Query Frame = 3
Query:  165 IVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYARTKISDDELRNRIRGYLINDKSAPGQSEQVSEFLQLIKYVSGSYDTEEGFQLLDKEI-SAHESSKNSLEGSSRRLFYFALPPSVYPSVSRMIKKCCMNRSDLGGWTRIVVEKPFGKDLDSSEKLSAQIGELFEEPQ 683
            I++GASGDLAKKK +P ++ L+R G L   +  I GYAR+ ++ D++R +   Y    K+ P ++ ++ EF     YV+G YD    FQ L+  + S H  S+      + RLFY ALPP+VY +V++ IK+ CM++    GW R++VEKPFGKDL SS+KLS  I  LF E Q
Sbjct:   35 IIMGASGDLAKKKIYPTIWWLFRDGLLPE-DTFIVGYARSNLTVDDIRKQSEPYF---KATPEENLKLEEFFSRNSYVAGQYDEPASFQRLNAHMNSLHHGSQ------ANRLFYLALPPTVYEAVTKNIKETCMSQI---GWNRVIVEKPFGKDLQSSDKLSNHISSLFHEDQ 195          

HSP 2 Score: 21.9422 bits (45), Expect = 2.971e-32
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 2
Query:  683 IYRIDHYL 706
            IYRIDHYL
Sbjct:  196 IYRIDHYL 203          
BLAST of FC930204 vs. ExPASy Swiss-Prot
Match: G6PD_DICDI (Glucose-6-phosphate 1-dehydrogenase OS=Dictyostelium discoideum GN=g6pd-1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.757e-32
Identity = 75/174 (43.10%), Postives = 111/174 (63.79%), Query Frame = 3
Query:  156 LSIIVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYARTKISDDELRNRIRGYLINDKSAPGQSEQVSEFLQLIKYVSGSYDTEEGFQLLDKEISAHESSKNSLEGSSRRLFYFALPPSVYPSVSRMIKKCCMNRSDLGGWTRIVVEKPFGKDLDSSEKLSAQIGELFEE 677
            L++I+LGASGDLAKKKT+PALF LY +  L SN + I+GYAR+ I   + + RI       K   G  E+  +FL L+ Y SG YD +  +   +K I A E  +  ++    RLFY A+PPS++  VS  I    ++++   GW+R++VEKPFG+DL SS +L +++G+LF+E
Sbjct:   11 LTVIILGASGDLAKKKTYPALFGLYLRDLLPSNTI-IYGYARSHIEIGDFKARI------SKGLKGDEEKKKQFLNLLHYHSGKYDEKASYDEFEKLILAEEKKQQGVD-KFNRLFYMAIPPSIFIEVSIGIHGSLISKN---GWSRVIVEKPFGRDLASSRELVSELGKLFKE 173          
BLAST of FC930204 vs. ExPASy Swiss-Prot
Match: G6PD_KLULA (Glucose-6-phosphate 1-dehydrogenase OS=Kluyveromyces lactis GN=ZWF PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.505e-31
Identity = 75/174 (43.10%), Postives = 109/174 (62.64%), Query Frame = 3
Query:  162 IIVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYARTKISDDELRNRIRGYLINDKSAPGQSEQVSEFLQLIKYVSGSYDTEEGFQLLDKEISAHESSKNSLEGSSRRLFYFALPPSVYPSVSRMIKKCCMNRSDLGGWTRIVVEKPFGKDLDSSEKLSAQIGELFEEPQ 683
            I + GASGDL+KKKTFPALF LYR+G+L      I GYAR+K+S+++LR +++ +L     A   + +V+EFL ++ Y +G YD++EG+  L K I   E+ K   E    RLFY ALPPS++  V   +K+     S   G  R++VEKPFG DL S+ +L  ++  LF E +
Sbjct:   11 ITIFGASGDLSKKKTFPALFGLYREGYLNPT-TKIIGYARSKLSNEDLREKVKPFLKKPNGAKDDA-KVNEFLSMVSYHAGPYDSDEGYLELKKIIEEFEAEKKVDE--PHRLFYLALPPSIFIDVCSKLKENLYTES---GIQRVIVEKPFGHDLQSATELQEKLAPLFSEDE 177          
BLAST of FC930204 vs. ExPASy Swiss-Prot
Match: G6PD3_ARATH (Glucose-6-phosphate 1-dehydrogenase 3, chloroplastic OS=Arabidopsis thaliana GN=At1g24280 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 3.353e-31
Identity = 81/197 (41.12%), Postives = 116/197 (58.88%), Query Frame = 3
Query:   99 SLRNDSFSRDNDNVPETGCLSIIVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYARTKISDDELRNRIRGYLI--NDKSAPGQSEQVSEFLQLIKYVSGSYDTEEGFQLLDKEISAHESSKNSLEGSSRRLFYFALPPSVYPSVSRMIKKCCMNRSDLGGWTRIVVEKPFGKDLDSSEKLSAQIGELFEEPQ 683
            SL  D    ++D   +   +SI V+GASGDLAKKK FPALF LY +G L  +   IFGYAR+K++D ELR  +   L    DK A    E++ EFL+   Y SG YD++E F  LD+++  HE  +      S RLFY ++PP+++      +K    + S + GWTR++VEKPFG+D  +S  L+  + +  EE Q
Sbjct:   94 SLEADKVVAESDGGEQLSTVSITVVGASGDLAKKKIFPALFALYYEGCLPEH-FTIFGYARSKMTDAELRVMVSKTLTCRIDKRA-NCGEKMEEFLKRCFYHSGQYDSQEHFVALDEKLKEHEGGR-----LSNRLFYLSIPPNIFVDA---VKCASSSASSVNGWTRVIVEKPFGRDSKTSAALTKSLKQYLEEDQ 280          
BLAST of FC930204 vs. ExPASy Swiss-Prot
Match: G6PD2_ARATH (Glucose-6-phosphate 1-dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=At5g13110 PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 4.380e-31
Identity = 78/178 (43.82%), Postives = 112/178 (62.92%), Query Frame = 3
Query:  156 LSIIVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYARTKISDDELRNRIRGYLI--NDKSAPGQSEQVSEFLQLIKYVSGSYDTEEGFQLLDKEISAHESSKNSLEGSSRRLFYFALPPSVYPSVSRMIKKCCMNRSDLGGWTRIVVEKPFGKDLDSSEKLSAQIGELFEEPQ 683
            +SI V+GASGDLAKKK FPALF LY +G L  +   IFGY+R+K++D ELRN +   L    DK A    E++ EFL+   Y SG YD++E F  LDK++  HE+ +      S RLFY ++PP+++      +K    + S + GWTR++VEKPFG+D ++S  L+  + +  EE Q
Sbjct:  110 VSITVVGASGDLAKKKIFPALFALYYEGCLPEH-FTIFGYSRSKMTDVELRNMVSKTLTCRIDKRA-NCGEKMEEFLKRCFYHSGQYDSQEHFTELDKKLKEHEAGR-----ISNRLFYLSIPPNIFVDA---VKCASTSASSVNGWTRVIVEKPFGRDSETSAALTKSLKQYLEEDQ 277          
The following BLAST results are available for this feature:
BLAST of FC930204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
G6PD6_ARATH1.869e-9079.71Glucose-6-phosphate 1-dehydrogenase, cytoplasmic i... [more]
G6PD_SOLTU1.212e-8981.46Glucose-6-phosphate 1-dehydrogenase, cytoplasmic i... [more]
G6PD5_ARATH1.695e-8372.95Glucose-6-phosphate 1-dehydrogenase, cytoplasmic i... [more]
G6PD_MEDSA9.622e-7970.33Glucose-6-phosphate 1-dehydrogenase, cytoplasmic i... [more]
G6PD_YEAST2.743e-3345.76Glucose-6-phosphate 1-dehydrogenase OS=Saccharomyc... [more]
G6PD_MACRO2.971e-3243.68Glucose-6-phosphate 1-dehydrogenase OS=Macropus ro... [more]
G6PD_DICDI6.757e-3243.10Glucose-6-phosphate 1-dehydrogenase OS=Dictyosteli... [more]
G6PD_KLULA1.505e-3143.10Glucose-6-phosphate 1-dehydrogenase OS=Kluyveromyc... [more]
G6PD3_ARATH3.353e-3141.12Glucose-6-phosphate 1-dehydrogenase 3, chloroplast... [more]
G6PD2_ARATH4.380e-3143.82Glucose-6-phosphate 1-dehydrogenase 2, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionC34004H05EF PostHarvC1 Citrus clementina cDNA clone C34004H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930204 ID=FC930204; Name=FC930204; organism=Citrus clementina; type=EST; length=707bp
GATCCTTGTTTTCAACTCCAGCAACAATCTTTCTTCGTTCAGTTTTCAAC
AGAGAGTAGGAGATGGGATCAGGTCAATGGATAATGGAGAAAAGGTCAAG
TTTGAGGAATGATTCATTCTCAAGAGACAATGACAATGTGCCTGAAACTG
GATGTCTTTCAATTATCGTTCTTGGTGCTTCTGGAGATCTTGCCAAGAAA
AAGACTTTTCCTGCTCTCTTCAATCTTTATCGGCAGGGGTTTTTACAGTC
AAATGAAGTTCACATATTTGGCTATGCAAGGACTAAGATTTCGGATGATG
AGCTGAGAAATCGCATTCGTGGATATCTTATCAATGACAAAAGCGCACCG
GGACAATCAGAGCAAGTATCAGAGTTTTTGCAGCTGATTAAATATGTAAG
TGGTTCTTATGACACCGAGGAGGGCTTTCAATTGCTGGACAAGGAAATTT
CTGCACATGAATCATCAAAAAACAGTTTGGAAGGATCATCTCGTAGACTC
TTTTATTTTGCACTTCCACCGTCTGTATATCCATCTGTTTCCAGGATGAT
TAAGAAGTGCTGCATGAATAGATCTGATCTTGGTGGCTGGACACGTATTG
TTGTTGAGAAGCCATTTGGCAAGGATTTGGACTCATCTGAGAAACTTAGT
GCCCAGATTGGGGAGTTGTTTGAAGAACCACAATCTACCGTATTGATCAC
TATTTGG
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