FC930209

Overview
NameFC930209
Unique NameFC930209
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930209_ssr192 microsatellite FC930209_ssr192:192..203. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15458 contig Ccv1_Contig15458:117..827. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930209 vs. ExPASy Swiss-Prot
Match: P2C10_ARATH (Probable protein phosphatase 2C 10 OS=Arabidopsis thaliana GN=At1g34750 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.528e-26
Identity = 57/88 (64.77%), Postives = 66/88 (75.00%), Query Frame = 3
Query:  402 MDSLCCFNAS-YSKLVXXXXXXXXXXXXNVGLVKFGFSLVKGKANHPMEDHHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFS 662
            M  LCCF +S Y  +V            N G +KFG+SLVKGKANHPMED+HV+KFV++ G+ELGLFAIYDGHLGE VPAYLQKHLFS
Sbjct:    1 MAKLCCFGSSDYDLVVGRASTSSGKGRNNDGEIKFGYSLVKGKANHPMEDYHVSKFVKIDGNELGLFAIYDGHLGERVPAYLQKHLFS 88          
BLAST of FC930209 vs. ExPASy Swiss-Prot
Match: P2C09_ARATH (Probable protein phosphatase 2C 9 OS=Arabidopsis thaliana GN=At1g22280 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 6.587e-25
Identity = 49/87 (56.32%), Postives = 62/87 (71.26%), Query Frame = 3
Query:  402 MDSLCCFNASYSKLVXXXXXXXXXXXXNVGLVKFGFSLVKGKANHPMEDHHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFS 662
            M   CCF ++   +             + G++K+GFSLVKGKANHPMED+HVA F+ +Q HELGLFAIYDGH+G++VPAYLQK LFS
Sbjct:    1 MGKFCCFTSASEVVGGQSSSRSGKGRSDEGMIKYGFSLVKGKANHPMEDYHVANFINIQDHELGLFAIYDGHMGDSVPAYLQKRLFS 87          

HSP 2 Score: 24.6386 bits (52), Expect = 6.587e-25
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 1
Query:  670 KEEEFWVDPR 699
            KE EFWVDPR
Sbjct:   91 KEGEFWVDPR 100          
BLAST of FC930209 vs. ExPASy Swiss-Prot
Match: P2C17_ARATH (Probable protein phosphatase 2C 17 OS=Arabidopsis thaliana GN=At1g78200 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.273e-19
Identity = 51/104 (49.04%), Postives = 67/104 (64.42%), Query Frame = 3
Query:  402 MDSLCCFNASYSKLVXXXXXXXXXXXXNVGLVKFGFSLVKGKANHPMEDHHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFST-S*GGRVLG*PQRSIS 710
            M  +CC + S +++V              G +K+GFSL+KGK+NH MED+HVAKF    G+ELGLFAI+DGH G+ V AYLQKHLFS     G  L  P+R+I+
Sbjct:    1 MPKICC-SRSATQVVVAQKSNSGKGRNGEGGIKYGFSLIKGKSNHSMEDYHVAKFTNFNGNELGLFAIFDGHKGDHVAAYLQKHLFSNILKDGEFLVDPRRAIA 103          
BLAST of FC930209 vs. ExPASy Swiss-Prot
Match: P2C41_ORYSJ (Probable protein phosphatase 2C 41 OS=Oryza sativa subsp. japonica GN=Os04g0451900/Os04g0452000 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.513e-18
Identity = 46/89 (51.69%), Postives = 58/89 (65.17%), Query Frame = 3
Query:  402 MDSLCCFNASYSKLVXXXXXXXXXXXXNVGLVK--FGFSLVKGKANHPMEDHHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFS 662
            M   CCF A  S+                G VK  +GF LV+G  NHPMED+HVA+  + +G+ELGLFAI+DGHLG+TVPAYLQK+LF+
Sbjct:    1 MSRFCCFGAGCSEFSGHASTSSGKGKGIQGQVKVSYGFYLVRGMTNHPMEDYHVAELAEEKGNELGLFAIFDGHLGDTVPAYLQKNLFA 89          
BLAST of FC930209 vs. ExPASy Swiss-Prot
Match: P2C62_ORYSJ (Probable protein phosphatase 2C 62 OS=Oryza sativa subsp. japonica GN=Os07g0507000 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 36/55 (65.45%), Postives = 45/55 (81.82%), Query Frame = 3
Query:  495 VKFGFSLVKGKANHPMEDHHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLF 659
            VK G+ LVKGK+NHPMED+ VA++ Q   H+LGLFAI+DGHLG TVP +L+ HLF
Sbjct:   37 VKHGYHLVKGKSNHPMEDYLVAEYRQEGEHDLGLFAIFDGHLGHTVPDFLRSHLF 91          
BLAST of FC930209 vs. ExPASy Swiss-Prot
Match: P2C58_ARATH (Probable protein phosphatase 2C 58 OS=Arabidopsis thaliana GN=At4g28400 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.427e-13
Identity = 34/55 (61.82%), Postives = 44/55 (80.00%), Query Frame = 3
Query:  495 VKFGFSLVKGKANHPMEDHHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLF 659
            +  GF  VKGK++HPMED+ V++F +L+GHELGLFAI+DGHLG  V  YLQ +LF
Sbjct:   34 ITHGFHCVKGKSSHPMEDYVVSEFKKLEGHELGLFAIFDGHLGHDVAKYLQTNLF 88          
BLAST of FC930209 vs. ExPASy Swiss-Prot
Match: P2C44_ORYSJ (Probable protein phosphatase 2C 44 OS=Oryza sativa subsp. japonica GN=Os04g0609600 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 33/55 (60.00%), Postives = 45/55 (81.82%), Query Frame = 3
Query:  495 VKFGFSLVKGKANHPMEDHHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLF 659
            V  GF LV+GK+ H MED+HVA++   + HELGLFAI+DGHLG++VP+YL+ +LF
Sbjct:   69 VTHGFHLVEGKSGHDMEDYHVAEYKYDKSHELGLFAIFDGHLGDSVPSYLKANLF 123          
BLAST of FC930209 vs. ExPASy Swiss-Prot
Match: P2C20_ARATH (Probable protein phosphatase 2C 20 OS=Arabidopsis thaliana GN=PPC3-1.2 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 9.250e-13
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 3
Query:  495 VKFGFSLVKGKANHPMEDHHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLF 659
            +  G+  VKGKA HPMED+ V++F ++ GH+LGLFAI+DGHLG  V  YLQ +LF
Sbjct:   30 IAHGYDFVKGKAGHPMEDYVVSEFKKVDGHDLGLFAIFDGHLGHDVAKYLQTNLF 84          
BLAST of FC930209 vs. ExPASy Swiss-Prot
Match: P2C39_ARATH (Probable protein phosphatase 2C 39 OS=Arabidopsis thaliana GN=At3g15260 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 3
Query:  495 VKFGFSLVKGKANHPMEDHHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLF 659
            +  GF LVKGKA H MED+ VAKF ++  +ELGLFAI+DGHL   +P YL  HLF
Sbjct:   40 ITHGFHLVKGKAFHEMEDYVVAKFKEVDDNELGLFAIFDGHLSHEIPDYLCSHLF 94          
The following BLAST results are available for this feature:
BLAST of FC930209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
P2C10_ARATH9.528e-2664.77Probable protein phosphatase 2C 10 OS=Arabidopsis ... [more]
P2C09_ARATH6.587e-2556.32Probable protein phosphatase 2C 9 OS=Arabidopsis t... [more]
P2C17_ARATH2.273e-1949.04Probable protein phosphatase 2C 17 OS=Arabidopsis ... [more]
P2C41_ORYSJ2.513e-1851.69Probable protein phosphatase 2C 41 OS=Oryza sativa... [more]
P2C62_ORYSJ1.686e-1465.45Probable protein phosphatase 2C 62 OS=Oryza sativa... [more]
P2C58_ARATH1.427e-1361.82Probable protein phosphatase 2C 58 OS=Arabidopsis ... [more]
P2C44_ORYSJ3.179e-1360.00Probable protein phosphatase 2C 44 OS=Oryza sativa... [more]
P2C20_ARATH9.250e-1358.18Probable protein phosphatase 2C 20 OS=Arabidopsis ... [more]
P2C39_ARATH7.830e-1260.00Probable protein phosphatase 2C 39 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionC34004H10EF PostHarvC1 Citrus clementina cDNA clone C34004H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930209 ID=FC930209; Name=FC930209; organism=Citrus clementina; type=EST; length=711bp
CTCTTTAATTTGTTTCTCTTGTTCATAAAATAATTTTTATTTTTTCTCCT
TTACAAAAAGGTTTCAATTCTTCTCCTCTCTCCCTCTTTTTTTTTTTCCC
CCCCTTTCTAATCTCTGTTTATAATAATCTATCTCTTTATTCAATTGCTT
GCACAAACTAATAAACACAAATTATATTAGAAAAAAAAGAGGAAGAAGAA
GAAACATCAAAAACCCCCCACGGAACAAAGATCACCAACAAGGAGCATCA
GTTGATTTTGAGCTTTGAATTGATCAACGAGAGATTGAGAATTCTGGGAG
CTGGGCTTGATTTAAAATTTTGGAGTAGAGTTGTTTACCAAGAGTTTGAT
GTTGAAATTTTAGTTGAATTAGTTGGAACTGCTTTGCTGAATTTTTATTT
TATGGATAGCTTATGCTGCTTTAATGCTTCGTACTCGAAGCTTGTGGGAG
GACGCTCGTCATCTACTGGTAAGGGGAGAAGCAATGTTGGATTAGTCAAG
TTTGGTTTCAGCTTGGTAAAAGGGAAAGCTAATCATCCCATGGAGGATCA
TCATGTTGCAAAATTTGTGCAACTTCAAGGTCATGAATTAGGGCTGTTTG
CTATTTATGACGGCCATTTGGGAGAAACTGTGCCTGCCTACCTACAAAAG
CACTTGTTTTCCACATCCTAAGGAGGAAGAGTTTTGGGTTGACCCCAGAG
ATCTATCTCTA
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