FC930210

Overview
NameFC930210
Unique NameFC930210
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11295 contig Ccv1_Contig11295:139..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930210 vs. ExPASy Swiss-Prot
Match: P2C76_ARATH (Probable protein phosphatase 2C 76 OS=Arabidopsis thaliana GN=At5g53140 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.764e-27
Identity = 64/128 (50.00%), Postives = 86/128 (67.19%), Query Frame = 3
Query:  327 MLCNSYIRTVIVRV-VNIGSFTRTRLELSNINKSLHAGLR-----VGY--TWNREFRKSSKMMVDSAA--KRGPIVDVLPEKEDDGGYVSGGWKSEDGKLRCGYSSFRGKRATMEDFYDIKTSMLMGK 680
            M+C+S+IR+ IV+    IG   + R +  +I K+L  G       +G+  T    FR S+KMMVD++A  KR  +VD+ PEK DDGGY+ GGWK++DG L CGY SFRGKR+TMEDFYDIK S + G+
Sbjct:    1 MVCSSFIRSFIVQAGCRIGVLAQGRHQFIHIKKTLSVGFGFRTSVIGFRTTSGIGFRTSAKMMVDTSAGEKRISLVDMPPEKVDDGGYIGGGWKNDDGSLSCGYCSFRGKRSTMEDFYDIKASTIEGQ 128          

HSP 2 Score: 25.0238 bits (53), Expect = 5.764e-27
Identity = 8/11 (72.73%), Postives = 11/11 (100.00%), Query Frame = 2
Query:  668 VDGQAVCMFGV 700
            ++GQAVCMFG+
Sbjct:  125 IEGQAVCMFGI 135          
BLAST of FC930210 vs. ExPASy Swiss-Prot
Match: P2C13_ORYSJ (Probable protein phosphatase 2C 13 OS=Oryza sativa subsp. japonica GN=Os02g0255100 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.347e-15
Identity = 40/90 (44.44%), Postives = 55/90 (61.11%), Query Frame = 3
Query:  447 GYTWNREFRKSSKMMVDSAAKRGPIVDVLPEKEDDG------------GYVSGGWKSEDGKLRCGYSSFRGKRATMEDFYDIKTSMLMGK 680
            G++  R  R +++MM+DS+        + P++   G            GY SGGW  EDGKL+CGYSSFRGKRATMEDFYD+K + + G+
Sbjct:   49 GHSGWRGLRVAARMMLDSSDSAAAAGQMQPQQRAAGAVACSAQDGGAAGYASGGWAREDGKLKCGYSSFRGKRATMEDFYDVKLTEIDGQ 138          

HSP 2 Score: 21.9422 bits (45), Expect = 4.347e-15
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 2
Query:  668 VDGQAVCMFGV 700
            +DGQAV +FGV
Sbjct:  135 IDGQAVSLFGV 145          
BLAST of FC930210 vs. ExPASy Swiss-Prot
Match: P2C52_ORYSJ (Probable protein phosphatase 2C 52 OS=Oryza sativa subsp. japonica GN=Os05g0587100 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 3
Query:  537 EKEDDGGYVSGGWKSEDGKLRCGYSSFRGKRATMEDFYDIKTSMLMGK 680
            E+ D+ GY+SGGWKSEDG L CGYSSFRGKRA+MEDFYDIK+S +  K
Sbjct:  209 ERVDEVGYMSGGWKSEDGFLSCGYSSFRGKRASMEDFYDIKSSKIDDK 256          
BLAST of FC930210 vs. ExPASy Swiss-Prot
Match: P2C07_ORYSJ (Probable protein phosphatase 2C 7 OS=Oryza sativa subsp. japonica GN=Os01g0618200 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 27/43 (62.79%), Postives = 37/43 (86.05%), Query Frame = 3
Query:  537 EKEDDGGYVSGGWKSEDGKLRCGYSSFRGKRATMEDFYDIKTS 665
            +++D+  Y+ GGW S+DG++ CGYSSFRG+RA MEDFYDIK+S
Sbjct:   95 DEDDEARYICGGWTSDDGRMSCGYSSFRGRRANMEDFYDIKSS 137          
The following BLAST results are available for this feature:
BLAST of FC930210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
P2C76_ARATH5.764e-2750.00Probable protein phosphatase 2C 76 OS=Arabidopsis ... [more]
P2C13_ORYSJ4.347e-1544.44Probable protein phosphatase 2C 13 OS=Oryza sativa... [more]
P2C52_ORYSJ6.354e-1472.92Probable protein phosphatase 2C 52 OS=Oryza sativa... [more]
P2C07_ORYSJ1.325e-1162.79Probable protein phosphatase 2C 7 OS=Oryza sativa ... [more]
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Properties
Property NameValue
Genbank descriptionC34004H11EF PostHarvC1 Citrus clementina cDNA clone C34004H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930210 ID=FC930210; Name=FC930210; organism=Citrus clementina; type=EST; length=709bp
GCTCTCTCTATCTCTAGGGTTCCAGATTCTTTCTCCATCGCTCCAGAGAG
AGAAAGAAATTGCAACACCAACATCTACTCACCTGCTTCCACGTGTCCCA
TCATCCGACCCGAAACCGATCACCACCCCGCTCCCCCTCCGATCCGATCC
GCCTTCCAAACTAGATCTGTAATTTGCTTTGAATATTCTGGTCCCCATTT
CAAAAAAAAAGAAGAAGCAATCTTTATTTCAAAAAGCTTCATTTTATGAC
TCCAATAGTTTAAAAAAATTGTTGTGTTATTGTGGGGTTGGTGATCTGGC
ATTGAAGGCCGGAGTGAATAATTTAGATGTTATGCAACAGTTATATAAGG
ACTGTGATTGTGCGAGTTGTGAATATTGGATCGTTTACGAGAACGAGGCT
GGAATTAAGCAACATAAACAAGAGTTTGCATGCGGGTCTTCGTGTAGGCT
ATACTTGGAATCGAGAATTTAGAAAGAGCTCCAAGATGATGGTTGATTCG
GCAGCGAAGCGGGGACCCATTGTCGATGTATTACCCGAGAAAGAGGATGA
CGGTGGTTACGTCAGCGGAGGGTGGAAAAGTGAAGATGGAAAACTGAGAT
GTGGATACTCAAGTTTTAGGGGAAAGAGGGCAACTATGGAGGATTTCTAT
GACATTAAAACTTCCATGTTGATGGGCAAGCTGTCTGCATGTTTGGAGTC
TTGATGGTC
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