FC930212

Overview
NameFC930212
Unique NameFC930212
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15118 contig Ccv1_Contig15118:1..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930212 vs. ExPASy Swiss-Prot
Match: NAC98_ARATH (Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana GN=NAC098 PE=1 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.488e-71
Identity = 125/154 (81.17%), Postives = 139/154 (90.26%), Query Frame = 1
Query:  157 LPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAK--ALVGMKKTLVFYKGRAPKGQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKS 612
            LPPGFRFHPTDEELITHYL  KV DGCFS+RAI EVDLNKCEPW LP RAKMGEKEWYFF +RDRKYPTGLRTNRATEAGYWKATGKD+EI+ +K  ALVGMKKTLVFYKGRAPKG+K+NWVMHEYRLEGK+S +   +++K+EWVI RVFQK+
Sbjct:   17 LPPGFRFHPTDEELITHYLLRKVLDGCFSSRAIAEVDLNKCEPWQLPGRAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIFSSKTCALVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFSYHFISRSSKDEWVISRVFQKT 170          
BLAST of FC930212 vs. ExPASy Swiss-Prot
Match: NAC54_ARATH (Protein CUP-SHAPED COTYLEDON 1 OS=Arabidopsis thaliana GN=NAC054 PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.033e-64
Identity = 116/167 (69.46%), Postives = 138/167 (82.63%), Query Frame = 1
Query:  121 GMEKYDDQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEI--YKAKALVGMKKTLVFYKGRAPKGQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSG 615
            G  +++D+    +PPGFRFHPTDEELIT+YL  KV D  FS  AI +VDLNK EPW+LP +AKMGEKEWYFF +RDRKYPTGLRTNRATEAGYWKATGKD+EI   K K+L+GMKKTLVFYKGRAPKG+K+ WVMHEYRL+GK+S +    +AK+EWV+C+V  KSG
Sbjct:   10 GRPRFEDESL--MPPGFRFHPTDEELITYYLLKKVLDSNFSCAAISQVDLNKSEPWELPEKAKMGEKEWYFFTLRDRKYPTGLRTNRATEAGYWKATGKDREIKSSKTKSLLGMKKTLVFYKGRAPKGEKSCWVMHEYRLDGKFSYHYISSSAKDEWVLCKVCLKSG 174          
BLAST of FC930212 vs. ExPASy Swiss-Prot
Match: NAC31_ARATH (Protein CUP-SHAPED COTYLEDON 3 OS=Arabidopsis thaliana GN=NAC031 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.649e-62
Identity = 113/165 (68.48%), Postives = 128/165 (77.58%), Query Frame = 1
Query:  136 DDQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKA--LVGMKKTLVFYKGRAPKGQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGK 624
            +++ +  LPPGFRFHPTDEELIT YL  K+F G  S   I EVDLN+CEPW+LP  AKMGE+EWYF+ +RDRKYPTGLRTNRAT AGYWKATGKDKE++      LVGMKKTLVFYKGRAP+G KT WVMHEYRLE  +S   H  T K EWVICRVF K+G  K
Sbjct:   15 EERNERGLPPGFRFHPTDEELITFYLASKIFHGGLSGIHISEVDLNRCEPWELPEMAKMGEREWYFYSLRDRKYPTGLRTNRATTAGYWKATGKDKEVFSGGGGQLVGMKKTLVFYKGRAPRGLKTKWVMHEYRLENDHS---HRHTCKEEWVICRVFNKTGDRK 176          
BLAST of FC930212 vs. ExPASy Swiss-Prot
Match: NAC77_ORYSJ (NAC domain-containing protein 77 OS=Oryza sativa subsp. japonica GN=NAC77 PE=2 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 3.012e-56
Identity = 107/182 (58.79%), Postives = 125/182 (68.68%), Query Frame = 1
Query:  130 KYDDQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIY----------------KAKALVGMKKTLVFYKGRAPKGQKTNWVMHEYRLEGKYSAYDHPK---TAKNEWVICRVFQKSGG 618
            K +    + LPPGFRFHPTD E+I  YL  K+ +  F++  IGEVDLNKCEPWDLP +AKMGEKEWYFF  +D KYPTG+RTNRAT+ GYWKATGKD+EI+                K K LVGMKKTLVFY GRAPKG KTNWVMHE+RL      + HP      K+EWV+C+VF K  G
Sbjct:   10 KLEQDGGLFLPPGFRFHPTDAEVILSYLLQKLLNPSFTSLPIGEVDLNKCEPWDLPSKAKMGEKEWYFFSHKDMKYPTGMRTNRATKEGYWKATGKDREIFRQPAAVNTSSYGGSSNKKKQLVGMKKTLVFYMGRAPKGTKTNWVMHEFRLHANLHNH-HPNLRLNPKDEWVVCKVFHKKQG 190          
BLAST of FC930212 vs. ExPASy Swiss-Prot
Match: NAC22_ARATH (NAC domain-containing protein 21/22 OS=Arabidopsis thaliana GN=NAC021 PE=1 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 6.103e-50
Identity = 90/160 (56.25%), Postives = 119/160 (74.38%), Query Frame = 1
Query:  148 QIELPPGFRFHPTDEELITHYLTPK-VFDGCFSARAIGEVDLNKCEPWDLPRRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPKGQKTNWVMHEYRLEGKYSAYDHP-KTAKNEWVICRVFQKSGGG 621
            + +LPPGFRFHP D+EL+  YL  + + +       + +VDLNKCEPWD+P+ A +G K+WYF+  RDRKY TGLRTNRAT  GYWKATGKD+ I +   LVGM+KTLVFY+GRAP+G+KT+WVMHE+RL+G +   +H   + K +WV+CRVF K+  G
Sbjct:   16 EAKLPPGFRFHPKDDELVCDYLMRRSLHNNHRPPLVLIQVDLNKCEPWDIPKMACVGGKDWYFYSQRDRKYATGLRTNRATATGYWKATGKDRTILRKGKLVGMRKTLVFYQGRAPRGRKTDWVMHEFRLQGSHHPPNHSLSSPKEDWVLCRVFHKNTEG 175          

HSP 2 Score: 21.557 bits (44), Expect = 6.103e-50
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 3
Query:  651 LGSFGNGMGSSALPPLMD 704
            +GS  +   S++LPPLMD
Sbjct:  182 MGSCFDETASASLPPLMD 199          
BLAST of FC930212 vs. ExPASy Swiss-Prot
Match: NAC72_ARATH (NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.091e-49
Identity = 91/169 (53.85%), Postives = 116/169 (68.64%), Query Frame = 1
Query:  121 GMEKYDDQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPKGQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKK 627
            G+ + D   Q+ LPPGFRF+PTDEEL+  YL  KV    FS + IG++DL K +PWDLP +A  GEKEWYFF  RDRKYP G R NR   +GYWKATG DK I      VG+KK LVFY G+APKG KTNW+MHEYRL     +  H  +  ++WV+CR+++K+ G ++
Sbjct:    2 GVREKDPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGYHFSLQVIGDIDLYKFDPWDLPSKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITADGRRVGIKKALVFYAGKAPKGTKTNWIMHEYRL--IEHSRSHGSSKLDDWVLCRIYKKTSGSQR 168          
BLAST of FC930212 vs. ExPASy Swiss-Prot
Match: NAC7_ARATH (NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.498e-47
Identity = 91/155 (58.71%), Postives = 112/155 (72.26%), Query Frame = 1
Query:  157 LPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGEKE---WYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPKGQKTNWVMHEYRLEGKYSAYDHPKTAKNE-WVICRVFQK 609
            +PPGFRFHPTDEEL+ +YL  KV         I ++DL K EPWDL    K+G +E   WYFF  +D+KYPTG RTNRAT+AG+WKATG+DK IY   +L+GM+KTLVFYKGRAP GQK++W+MHEYRLE      D   T + E WV+CRVF+K
Sbjct:    7 VPPGFRFHPTDEELVDYYLRKKVASKRIEIDFIKDIDLYKIEPWDLQELCKIGHEEQSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLRHSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE-----TDENGTPQEEGWVVCRVFKK 156          
BLAST of FC930212 vs. ExPASy Swiss-Prot
Match: NAC19_ARATH (NAC domain-containing protein 19 OS=Arabidopsis thaliana GN=NAC019 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.338e-47
Identity = 89/172 (51.74%), Postives = 114/172 (66.28%), Query Frame = 1
Query:  121 GMEKYDDQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPKGQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKKHIF 636
            G+++ D   Q+ LPPGFRF+PTDEEL+  YL  K     FS + I E+DL K +PW LP +A  GEKEWYFF  RDRKYP G R NR   +GYWKATG DK I      VG+KK LVFY G+APKG KTNW+MHEYRL     +  +  T  ++WV+CR+++K    +K ++
Sbjct:    2 GIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRL--IEPSRRNGSTKLDDWVLCRIYKKQSSAQKQVY 171          
BLAST of FC930212 vs. ExPASy Swiss-Prot
Match: NAC76_ORYSJ (NAC domain-containing protein 76 OS=Oryza sativa subsp. japonica GN=NAC76 PE=2 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 7.436e-47
Identity = 89/157 (56.69%), Postives = 112/157 (71.34%), Query Frame = 1
Query:  151 IELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMG---EKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKAL-VGMKKTLVFYKGRAPKGQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQK 609
            + +PPGFRFHPTDEEL+ +YL  KV         I E+DLNK EPWDL  R ++G   + EWYFF  +D+KYPTG RTNRAT AG+WKATG+DK I+ A A  +GM+KTLVFY GRAP G+KT+W+MHEYRL+      D+    ++ WV+CRVF K
Sbjct:    8 LSVPPGFRFHPTDEELLYYYLRKKVAYEAIDLDVIREIDLNKLEPWDLKDRCRIGTGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIFLANACRIGMRKTLVFYVGRAPHGKKTDWIMHEYRLD-----QDNVDVQEDGWVVCRVFMK 159          
BLAST of FC930212 vs. ExPASy Swiss-Prot
Match: NAC55_ARATH (NAC domain-containing protein 55 OS=Arabidopsis thaliana GN=NAC055 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.436e-47
Identity = 89/172 (51.74%), Postives = 113/172 (65.70%), Query Frame = 1
Query:  121 GMEKYDDQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPKGQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKKHIF 636
            G+++ D   Q+ LPPGFRF+PTDEEL+  YL  K     FS + I E+DL K +PW LP +A  GEKEWYFF  RDRKYP G R NR   +GYWKATG DK I      VG+KK LVFY G+APKG KTNW+MHEYRL     +  +  T  ++WV+CR+++K    +K  +
Sbjct:    2 GLQELDPLAQLSLPPGFRFYPTDEELMVEYLCRKAAGHDFSLQLIAEIDLYKFDPWVLPSKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVISTEGRRVGIKKALVFYIGKAPKGTKTNWIMHEYRL--IEPSRRNGSTKLDDWVLCRIYKKQTSAQKQAY 171          
The following BLAST results are available for this feature:
BLAST of FC930212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
NAC98_ARATH1.488e-7181.17Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thal... [more]
NAC54_ARATH1.033e-6469.46Protein CUP-SHAPED COTYLEDON 1 OS=Arabidopsis thal... [more]
NAC31_ARATH1.649e-6268.48Protein CUP-SHAPED COTYLEDON 3 OS=Arabidopsis thal... [more]
NAC77_ORYSJ3.012e-5658.79NAC domain-containing protein 77 OS=Oryza sativa s... [more]
NAC22_ARATH6.103e-5056.25NAC domain-containing protein 21/22 OS=Arabidopsis... [more]
NAC72_ARATH2.091e-4953.85NAC domain-containing protein 72 OS=Arabidopsis th... [more]
NAC7_ARATH1.498e-4758.71NAC domain-containing protein 7 OS=Arabidopsis tha... [more]
NAC19_ARATH3.338e-4751.74NAC domain-containing protein 19 OS=Arabidopsis th... [more]
NAC76_ORYSJ7.436e-4756.69NAC domain-containing protein 76 OS=Oryza sativa s... [more]
NAC55_ARATH7.436e-4751.74NAC domain-containing protein 55 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionC34005A02EF PostHarvC1 Citrus clementina cDNA clone C34005A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930212 ID=FC930212; Name=FC930212; organism=Citrus clementina; type=EST; length=707bp
GTATTTAATTAGTTATACTCTTCACAAAACTTCCCTTTTCTCTTAAAGCC
TCATTATAAACAAGCTTTTCACTTCACAACTATTCTTCAGTTAAGCACTA
GTCATTCTTAGCTTCTTGCAGGAATGGAGAAATATGACGATCAAGAACAG
ATTGAATTGCCTCCAGGATTTCGGTTCCATCCCACGGATGAAGAGCTTAT
AACTCATTACTTAACACCAAAGGTTTTTGATGGTTGTTTTTCAGCTAGAG
CTATCGGTGAAGTTGATTTGAACAAGTGTGAGCCCTGGGATTTGCCTCGG
AGAGCTAAAATGGGTGAAAAGGAATGGTATTTTTTTTGTGTTAGGGACAG
AAAGTACCCAACTGGATTGAGAACAAATAGAGCTACTGAAGCAGGATACT
GGAAAGCCACAGGCAAAGATAAGGAGATTTACAAAGCAAAAGCACTTGTG
GGGATGAAGAAAACTTTGGTTTTTTACAAAGGAAGAGCCCCGAAAGGTCA
AAAAACCAACTGGGTCATGCATGAATATCGTTTAGAAGGCAAATATTCTG
CCTACGATCACCCCAAAACAGCCAAAAATGAGTGGGTGATTTGTAGGGTG
TTTCAAAAGAGTGGTGGAGGAAAGAAACACATATTCAAGGGATGGTGAAA
TTAGGCTCATTCGGGAACGGCATGGGCTCTTCTGCGTTGCCTCCATTGAT
GGATTCA
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