FC930218

Overview
NameFC930218
Unique NameFC930218
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3415 contig Ccv1_Contig3415:84..787. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930218 vs. ExPASy Swiss-Prot
Match: VA713_ARATH (Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 3.170e-82
Identity = 151/179 (84.36%), Postives = 172/179 (96.09%), Query Frame = 3
Query:  171 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNN-DSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMXGNTFRFRKQARR 704
            MAI+F+LVARG+VVL+E SAT+TNAS+I++QIL+K+PGN+ DSH+SYSQDRYIFHVKRTDGLTVLCMAD+TAGR IPFAFL+DIHQRFVKTYGRA+ SAQAY MNDEFSRVLSQQME+YS+DPNADR++RIKGEMSQVRNVMIENIDKVL+RG+RLELLVDKT NM GNTFRFRKQARR
Sbjct:    1 MAIIFALVARGTVVLSEFSATSTNASSISKQILEKLPGNDSDSHMSYSQDRYIFHVKRTDGLTVLCMADETAGRNIPFAFLDDIHQRFVKTYGRAIHSAQAYSMNDEFSRVLSQQMEFYSNDPNADRMSRIKGEMSQVRNVMIENIDKVLDRGERLELLVDKTENMQGNTFRFRKQARR 179          
BLAST of FC930218 vs. ExPASy Swiss-Prot
Match: VA711_ARATH (Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=2 SV=2)

HSP 1 Score: 302.753 bits (774), Expect = 1.204e-81
Identity = 148/178 (83.15%), Postives = 171/178 (96.07%), Query Frame = 3
Query:  171 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMXGNTFRFRKQARR 704
            MAIL++LVARG+VVL+E +AT+TNAS IA+QIL+K+PG+NDS+VSYSQDRY+FHVKRTDGLTVLCMA++TAGRRIPFAFLEDIHQRFV+TYGRAV +A AY MN+EFSRVLSQQ++YYS+DPNADRINRIKGEM+QVR VMIENIDKVL+RG+RLELLVDKTANM GNTFRFRKQARR
Sbjct:    1 MAILYALVARGTVVLSEFTATSTNASTIAKQILEKVPGDNDSNVSYSQDRYVFHVKRTDGLTVLCMAEETAGRRIPFAFLEDIHQRFVRTYGRAVHTALAYAMNEEFSRVLSQQIDYYSNDPNADRINRIKGEMNQVRGVMIENIDKVLDRGERLELLVDKTANMQGNTFRFRKQARR 178          
BLAST of FC930218 vs. ExPASy Swiss-Prot
Match: VA712_ARATH (Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana GN=VAMP712 PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 4.577e-81
Identity = 146/178 (82.02%), Postives = 167/178 (93.82%), Query Frame = 3
Query:  171 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMXGNTFRFRKQARR 704
            M+IL++LVARG+VVLAE S T+TNAS IA+QIL+KIPGN DSHVSYSQDRY+FHVKRTDGLTVLCMAD+ AGRRIPF+FLEDIHQRFV+TYGRA+ SAQAY MNDEFSRVL+QQ+EYYS+DPNAD I+RIKGEM+QVR+VMIENID +L+RG+RLELLVDKTANM GNTFRFRKQ RR
Sbjct:    1 MSILYALVARGTVVLAELSTTSTNASTIAKQILEKIPGNGDSHVSYSQDRYVFHVKRTDGLTVLCMADEDAGRRIPFSFLEDIHQRFVRTYGRAIHSAQAYAMNDEFSRVLNQQIEYYSNDPNADTISRIKGEMNQVRDVMIENIDNILDRGERLELLVDKTANMQGNTFRFRKQTRR 178          
BLAST of FC930218 vs. ExPASy Swiss-Prot
Match: VA714_ARATH (Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 9.922e-60
Identity = 106/179 (59.22%), Postives = 148/179 (82.68%), Query Frame = 3
Query:  171 MAILFSLVARGSVVLAECSATATNASAIARQILDKI-PGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMXGNTFRFRKQARR 704
            MAI++++VARG+VVLAE SA   N  A+ R+IL+K+ P  +D  + +SQDRYIFH+ R+DGLT LCMA+DT GRR+PF++LE+IH RF+K YG+   +A AY MNDEFSRVL QQME++S +P+ D +NR++GE+S++R+VM+ENI+K++ERGDR+ELLVDKTA M  ++F FRKQ++R
Sbjct:    1 MAIVYAVVARGTVVLAEFSAVTGNTGAVVRRILEKLSPEISDERLCFSQDRYIFHILRSDGLTFLCMANDTFGRRVPFSYLEEIHMRFMKNYGKVAHNAPAYAMNDEFSRVLHQQMEFFSSNPSVDTLNRVRGEVSEIRSVMVENIEKIMERGDRIELLVDKTATMQDSSFHFRKQSKR 179          
BLAST of FC930218 vs. ExPASy Swiss-Prot
Match: VAM7B_DICDI (Vesicle-associated membrane protein 7B OS=Dictyostelium discoideum GN=vamp7B PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.392e-39
Identity = 81/179 (45.25%), Postives = 124/179 (69.27%), Query Frame = 3
Query:  171 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENI-DKVLERGDRLELLVDKTANMXGNTFRFRKQARR 704
            M I++SLVARGS VLAE ++T  N   I R+ILD IP N D+ +SY  ++YIFH   +D LT LCMAD+  GRRIPF FL+D+  RF   YG    +A AYGMN +FSR L   M++YS+    D ++R   E+ +V+N+++ +I  ++L+RG+++E+LV++T  +   +F+F+KQ+++
Sbjct:    1 MPIIYSLVARGSSVLAEFTSTNGNFVTITRRILDLIPPN-DTKMSYVYEKYIFHYLVSDTLTYLCMADEEFGRRIPFTFLDDVKNRFKSMYGDKGKTAIAYGMNSDFSRTLENLMDHYSNTTRVDTMSRTMAEIDEVKNILVSDIAPQLLKRGEKIEMLVERTDTLNQQSFKFKKQSKQ 178          
BLAST of FC930218 vs. ExPASy Swiss-Prot
Match: VAMP7_RAT (Vesicle-associated membrane protein 7 OS=Rattus norvegicus GN=Vamp7 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.061e-33
Identity = 69/177 (38.98%), Postives = 111/177 (62.71%), Query Frame = 3
Query:  171 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMXGNTFRFRKQAR 701
            MAILF++VARG+ +LA+ +    N   +  QIL KIP  N+  ++YS   Y+FH    D +  LC+ DD   R   F FL ++ +RF  TYG    +A  Y MN EFS VL+ Q++++S++ + DR+   + ++ +++ +M+ NID V +RG+RLELL+DKT N+  ++  F+  +R
Sbjct:    1 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNK-LTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFGFLNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSENQSLDRVTETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSR 176          
BLAST of FC930218 vs. ExPASy Swiss-Prot
Match: VAMP7_MOUSE (Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.764e-32
Identity = 68/177 (38.42%), Postives = 112/177 (63.28%), Query Frame = 3
Query:  171 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMXGNTFRFRKQAR 701
            MAILF++VARG+ +LA+ +    N   +  QIL KIP  N+  ++YS   Y+FH    D +  LC+ DD   R   F+FL ++ +RF  TYG    +A  Y MN EFS VL+ Q++++S++ + D++   + ++ +++ +M+ NID V +RG+RLELL+DKT N+  ++  F+  +R
Sbjct:    1 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNK-LTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSR 176          
BLAST of FC930218 vs. ExPASy Swiss-Prot
Match: VAMP7_HUMAN (Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 3.929e-32
Identity = 69/177 (38.98%), Postives = 110/177 (62.15%), Query Frame = 3
Query:  171 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMXGNTFRFRKQAR 701
            MAILF++VARG+ +LA+ +    N   +  QIL KIP  N+  ++YS   Y+FH    D +  LC+ DD   R   F FL +I +RF  TYG    +A  Y MN EFS VL+ Q++++S++   D++   + ++ +++ +M+ NID V +RG+RLELL+DKT N+  ++  F+  +R
Sbjct:    1 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNK-LTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSR 176          
BLAST of FC930218 vs. ExPASy Swiss-Prot
Match: VAMP7_CHICK (Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.929e-32
Identity = 69/177 (38.98%), Postives = 109/177 (61.58%), Query Frame = 3
Query:  171 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMXGNTFRFRKQAR 701
            MAILF++VARG+ +LA+ +    N   +  QIL KIP  N+  ++YS   Y+FH    D +  LC+ DD   R   F FL +I +RF  TYG    +A  Y MN EFS VL+ Q++Y+S+    D++   + ++ +++ +M+ NID V +RG++LELL+DKT N+  ++  F+  +R
Sbjct:    1 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNK-LTYSHGNYLFHYICQDRIIYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKYHSESKGTDQVAETQAQVDELKGIMVRNIDLVAQRGEKLELLIDKTENLVDSSVTFKTTSR 176          
BLAST of FC930218 vs. ExPASy Swiss-Prot
Match: VAMP7_BOVIN (Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.929e-32
Identity = 69/177 (38.98%), Postives = 110/177 (62.15%), Query Frame = 3
Query:  171 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMXGNTFRFRKQAR 701
            MAILF++VARG+ +LA+ +    N   +  QIL KIP  N+  ++YS   Y+FH    D +  LC+ DD   R   F FL +I +RF  TYG    +A  Y MN EFS VL+ Q++++S++   D++   + ++ +++ +M+ NID V +RG+RLELL+DKT N+  ++  F+  +R
Sbjct:    1 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNK-LTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSR 176          
The following BLAST results are available for this feature:
BLAST of FC930218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
VA713_ARATH3.170e-8284.36Vesicle-associated membrane protein 713 OS=Arabido... [more]
VA711_ARATH1.204e-8183.15Vesicle-associated membrane protein 711 OS=Arabido... [more]
VA712_ARATH4.577e-8182.02Vesicle-associated membrane protein 712 OS=Arabido... [more]
VA714_ARATH9.922e-6059.22Vesicle-associated membrane protein 714 OS=Arabido... [more]
VAM7B_DICDI7.392e-3945.25Vesicle-associated membrane protein 7B OS=Dictyost... [more]
VAMP7_RAT6.061e-3338.98Vesicle-associated membrane protein 7 OS=Rattus no... [more]
VAMP7_MOUSE1.764e-3238.42Vesicle-associated membrane protein 7 OS=Mus muscu... [more]
VAMP7_HUMAN3.929e-3238.98Vesicle-associated membrane protein 7 OS=Homo sapi... [more]
VAMP7_CHICK3.929e-3238.98Vesicle-associated membrane protein 7 OS=Gallus ga... [more]
VAMP7_BOVIN3.929e-3238.98Vesicle-associated membrane protein 7 OS=Bos tauru... [more]

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Properties
Property NameValue
Genbank descriptionC34005A08EF PostHarvC1 Citrus clementina cDNA clone C34005A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930218 ID=FC930218; Name=FC930218; organism=Citrus clementina; type=EST; length=704bp
GAGTCATTTTTCATTTATTTACCATATCAGCCAAGCCTCTGATCGCCGAA
ACAACTAAAAGGAAAGAGAATTAACGCGGATCTAGGTCAATTAATTATTA
ATCAATTCGAGGAAGTGTTGTAGCTAATTGATCGGCGATTAAGCAATTAA
TCGCATAGAGAGAAAGAGAGATGGCGATACTTTTCTCTTTAGTGGCTCGA
GGATCGGTGGTGCTGGCGGAGTGCAGCGCCACGGCCACCAACGCCAGCGC
CATCGCCAGACAAATACTGGATAAGATTCCGGGGAATAATGACAGCCACG
TGTCGTATTCTCAAGATCGTTATATCTTCCACGTCAAGCGCACCGATGGC
CTCACCGTTCTCTGCATGGCGGATGATACCGCCGGAAGGCGAATTCCTTT
TGCATTTCTGGAAGACATTCATCAGAGATTTGTGAAGACTTACGGCCGTG
CAGTTCTTTCAGCCCAAGCTTATGGCATGAATGATGAATTTTCAAGGGTC
TTGAGCCAGCAAATGGAGTATTATTCAGATGACCCAAATGCTGATAGGAT
AAATAGAATTAAAGGTGAAATGAGCCAGGTAAGAAATGTCATGATAGAGA
ACATTGACAAAGTTTTAGAAAGAGGTGACCGCTTGGAACTGTTGGTTGAT
AAAACTGCTAATATGNCAGGAAACACGTTCCGCTTCAGAAAGCAGGCTAG
GCGT
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