FC930220

Overview
NameFC930220
Unique NameFC930220
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930220 vs. ExPASy Swiss-Prot
Match: RL74_ARATH (60S ribosomal protein L7-4 OS=Arabidopsis thaliana GN=RPL7D PE=2 SV=1)

HSP 1 Score: 352.058 bits (902), Expect = 1.617e-96
Identity = 173/209 (82.78%), Postives = 191/209 (91.39%), Query Frame = 3
Query:   54 MAEVEAKAPVPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEAKHFLWPFKL 680
            M E E+K  VPESVLKK+KR EEWALAKKQELE +KK   E RKLI+NRAKQY+KE+ E+E+ LIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKAT+NML RVEPYVTYGYPNLKSV+ELIYKRG+GKL+ QR ALTDNSI+++ LGK GIIC+EDLIHEIMTVGPHFKEA +FLWPF+L
Sbjct:    1 MTEAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQL 209          
BLAST of FC930220 vs. ExPASy Swiss-Prot
Match: RL72_ARATH (60S ribosomal protein L7-2 OS=Arabidopsis thaliana GN=RPL7B PE=1 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 6.792e-95
Identity = 171/206 (83.01%), Postives = 189/206 (91.75%), Query Frame = 3
Query:   63 VEAKAPVPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEAKHFLWPFKL 680
            VE+K  VPESVLKK+KR EEWAL KKQ +E +KK   E+RKLI+ RA+QY+KE+AE+EK LI LKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNML RVEPYVTYG+PNLKSV+ELIYKRGYGKL+ QRIALTDNSI+E+ALGK GIIC EDLIHEI+TVGPHFKEA +FLWPF+L
Sbjct:    2 VESKVVVPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTEDLIHEILTVGPHFKEANNFLWPFQL 207          
BLAST of FC930220 vs. ExPASy Swiss-Prot
Match: RL73_ARATH (60S ribosomal protein L7-3 OS=Arabidopsis thaliana GN=RPL7C PE=2 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 1.673e-93
Identity = 169/205 (82.44%), Postives = 188/205 (91.71%), Query Frame = 3
Query:   66 EAKAPVPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEAKHFLWPFKL 680
            E+K  VPESVLKK KR EEWALAKK E   +KK  +E+RKLI+ RA+QYAKE+AE++  LI+LKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKAT+NML RVEPYVTYGYPNLKSV+ELIYKRGYGKL+ QRIALTDNSI+++ALGK GIIC+EDLIHEIMTVGPHFKEA +FLWPF+L
Sbjct:    3 ESKVVVPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQL 207          
BLAST of FC930220 vs. ExPASy Swiss-Prot
Match: RL7_NEUCR (60S ribosomal protein L7 OS=Neurospora crassa GN=rpl-7 PE=3 SV=2)

HSP 1 Score: 253.062 bits (645), Expect = 1.022e-66
Identity = 124/200 (62.00%), Postives = 158/200 (79.00%), Query Frame = 3
Query:   81 VPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEAKHFLWPFKL 680
            VPE++LKK+K  E+    ++ E+E  K    E R +I+ RA+ Y KE+ + E+  I+L+R AK  G F++  EAKL+F+IRI+GIN I PK +KILQLLRL QI NGVF++V KAT  M+  VEP+V YGYPNLKSV+ELIYKRGYGK++KQR+ALTDNSIIE+ LGK+GIICMEDLIHEI TVGP+FK+A +FLWPFKL
Sbjct:   13 VPETLLKKRKSQEKARAERQAEIEKKKAANKEKRAVIFKRAETYVKEYRDVEREKIRLQRAAKQDGSFHIPAEAKLIFLIRIKGINKIPPKPRKILQLLRLLQINNGVFVRVTKATAEMIKIVEPWVAYGYPNLKSVKELIYKRGYGKVNKQRVALTDNSIIEENLGKYGIICMEDLIHEIYTVGPNFKQASNFLWPFKL 212          
BLAST of FC930220 vs. ExPASy Swiss-Prot
Match: RL7_MOUSE (60S ribosomal protein L7 OS=Mus musculus GN=Rpl7 PE=2 SV=2)

HSP 1 Score: 249.21 bits (635), Expect = 1.476e-65
Identity = 126/210 (60.00%), Postives = 158/210 (75.24%), Query Frame = 3
Query:   63 VEAKAPVPESVLKKQKRN----EEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEAKHFLWPFKL 680
            ++ K P     LKK++RN    +   L KK  L+T +K +   RKLIY +AK Y KE+ +  +  I++ R A+  G FYV  E KL F+IRIRGIN + PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK++K+RIALTDNS+I ++LGKFGIICMEDLIHEI TVG  FKEA +FLWPFKL
Sbjct:   29 LKKKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLRKAR---RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKL 235          
BLAST of FC930220 vs. ExPASy Swiss-Prot
Match: RL7_RAT (60S ribosomal protein L7 OS=Rattus norvegicus GN=Rpl7 PE=1 SV=2)

HSP 1 Score: 248.44 bits (633), Expect = 2.517e-65
Identity = 125/207 (60.39%), Postives = 156/207 (75.36%), Query Frame = 3
Query:   72 KAPVPESVLKKQKRN----EEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEAKHFLWPFKL 680
            K P     LKK++RN    +   L KK  L+T +K +   RKLIY +AK Y KE+ +  +  I++ R A+  G FYV  E KL F+IRIRGIN + PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK++K+RIALTDNS++ ++LGKFGIICMEDLIHEI TVG  FKEA +FLWPFKL
Sbjct:   22 KVPAVPETLKKKRRNFAELKVKRLRKKFALKTLRKAR---RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLVARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKL 225          
BLAST of FC930220 vs. ExPASy Swiss-Prot
Match: RL7_MACFA (60S ribosomal protein L7 OS=Macaca fascicularis GN=RPL7 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.288e-65
Identity = 122/209 (58.37%), Postives = 158/209 (75.60%), Query Frame = 3
Query:   57 AEVEAKAP-VPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEAKHFLWPFKL 680
            AE + K P VPE++ KK++   E  + + ++    K  +   RKLIY +AK Y KE+ +  +  I++ R A+  G FYV  E KL F+IRIRGIN + PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK++K+RIALTDN++I ++LGK+GIICMEDLIHEI TVG  FKEA +FLWPFKL
Sbjct:    4 AEEKKKVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEICTVGKRFKEANNFLWPFKL 212          
BLAST of FC930220 vs. ExPASy Swiss-Prot
Match: RL7_YARLI (60S ribosomal protein L7 OS=Yarrowia lipolytica GN=RPL7 PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.294e-65
Identity = 119/200 (59.50%), Postives = 157/200 (78.50%), Query Frame = 3
Query:   81 VPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEAKHFLWPFKL 680
            VPE++LKK+K  ++   AK+      K    E  K+I++RA++Y KE+ E E+  I+L+REAKL G FYV  E KL+F+IRI+GI+ + PK +K+LQLLRL QI NGVF+++ KAT  +L  VEPY+ +GYPNL SVR+L+YKRGYGK++KQRI L+DN+IIE+ALGK+GIICMEDLIHEI TVGP FK+A +FLWPFKL
Sbjct:   14 VPETLLKKRKNADQIRAAKEAAAAEKKAANAEKDKVIFSRAEKYVKEYREAEREQIRLRREAKLNGTFYVPAEPKLVFVIRIKGISKMAPKPRKVLQLLRLHQINNGVFVRITKATAELLRIVEPYIAFGYPNLASVRQLVYKRGYGKVNKQRIPLSDNAIIEEALGKYGIICMEDLIHEIYTVGPAFKQASNFLWPFKL 213          
BLAST of FC930220 vs. ExPASy Swiss-Prot
Match: RL7_BOVIN (60S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.294e-65
Identity = 122/208 (58.65%), Postives = 157/208 (75.48%), Query Frame = 3
Query:   60 EVEAKAP-VPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEAKHFLWPFKL 680
            E + K P VPE++ KK+K   E  + + ++    K  +   RKLIY +AK Y KE+ +  +  I++ R A+  G FYV  E KL F+IRIRGIN + PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK++K+RIALTDN++I ++LGK+GIICMEDLIHEI TVG  FKEA +FLWPFKL
Sbjct:    6 EKKKKVPAVPETLKKKRKNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKL 213          
BLAST of FC930220 vs. ExPASy Swiss-Prot
Match: RL7_PONAB (60S ribosomal protein L7 OS=Pongo abelii GN=RPL7 PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 9.566e-65
Identity = 121/208 (58.17%), Postives = 157/208 (75.48%), Query Frame = 3
Query:   60 EVEAKAP-VPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEAKHFLWPFKL 680
            E + K P VPE++ KK++   E  + + ++    K  +   RKLIY +AK Y KE+ +  +  I++ R A+  G FYV  E KL F+IRIRGIN + PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK++K+RIALTDN++I ++LGK+GIICMEDLIHEI TVG  FKEA +FLWPFKL
Sbjct:    5 EEKKKVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKL 212          
The following BLAST results are available for this feature:
BLAST of FC930220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL74_ARATH1.617e-9682.7860S ribosomal protein L7-4 OS=Arabidopsis thaliana... [more]
RL72_ARATH6.792e-9583.0160S ribosomal protein L7-2 OS=Arabidopsis thaliana... [more]
RL73_ARATH1.673e-9382.4460S ribosomal protein L7-3 OS=Arabidopsis thaliana... [more]
RL7_NEUCR1.022e-6662.0060S ribosomal protein L7 OS=Neurospora crassa GN=r... [more]
RL7_MOUSE1.476e-6560.0060S ribosomal protein L7 OS=Mus musculus GN=Rpl7 P... [more]
RL7_RAT2.517e-6560.3960S ribosomal protein L7 OS=Rattus norvegicus GN=R... [more]
RL7_MACFA3.288e-6558.3760S ribosomal protein L7 OS=Macaca fascicularis GN... [more]
RL7_YARLI4.294e-6559.5060S ribosomal protein L7 OS=Yarrowia lipolytica GN... [more]
RL7_BOVIN4.294e-6558.6560S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=... [more]
RL7_PONAB9.566e-6558.1760S ribosomal protein L7 OS=Pongo abelii GN=RPL7 P... [more]

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Properties
Property NameValue
Genbank descriptionC34005A10EF PostHarvC1 Citrus clementina cDNA clone C34005A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930220 ID=FC930220; Name=FC930220; organism=Citrus clementina; type=EST; length=682bp
GTCTTCCGCAGTCCGATCTTCTCCGGCCAGGGGACACGACACTTAAACTC
TAGATGGCTGAAGTAGAAGCCAAGGCGCCAGTTCCAGAGTCTGTCTTGAA
GAAGCAGAAGAGGAATGAGGAATGGGCTTTGGCAAAGAAGCAGGAGCTTG
AAACTTCCAAGAAGAACAAGCTCGAGAGTAGGAAGCTGATTTACAATAGG
GCTAAGCAGTATGCAAAGGAGTTTGCTGAGCAGGAAAAGGTGTTGATTCA
ATTGAAGCGTGAAGCTAAATTGAAAGGAGGGTTTTATGTTGACCCTGAAG
CTAAGCTTTTGTTTATCATCCGTATCCGTGGTATCAATGCCATTGACCCA
AAGACAAAGAAGATTTTGCAGCTTTTACGTTTAAGACAGATCTTCAATGG
AGTTTTTCTTAAAGTGAACAAAGCTACCATGAACATGCTTCATAGGGTTG
AACCTTACGTCACCTATGGATACCCCAATTTGAAGAGTGTTAGGGAGCTC
ATTTACAAGAGGGGATATGGAAAGCTAGATAAGCAGAGAATTGCTTTGAC
TGATAACTCAATTATTGAGAAGGCTTTGGGCAAGTTCGGTATCATCTGCA
TGGAAGACCTGATCCATGAGATTATGACAGTGGGACCTCATTTTAAGGAG
GCTAAACACTTTTTATGGCCATTTAAGCTCAA
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