FC930221

Overview
NameFC930221
Unique NameFC930221
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15119 contig Ccv1_Contig15119:1..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930221 vs. ExPASy Swiss-Prot
Match: CLPR4_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic OS=Arabidopsis thaliana GN=CLPR4 PE=1 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.597e-64
Identity = 129/189 (68.25%), Postives = 146/189 (77.25%), Query Frame = 1
Query:   73 MEVATASAPIFG-LRTRMLATPP------RTSPR---TVNCNRNLSTSFISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGN 609
            MEVA A+A  F  LR R  A  P      R+ PR   + +   +LS  F+SP+  GS+SSD  G +LR + LNP +F  SKP+  V+TMVIPF+ G+A EQPPPDLASYL+KNRIVYLGMS VPSVTELILAEFLYLQYED EKPIYLYINSTGTTK GEKLGY+TEAFAIYDVMGYVKPPIFTLCVGN
Sbjct:    1 MEVAAATATSFTTLRARTSAIIPSSTRNLRSKPRFSSSSSLRASLSNGFLSPYTGGSISSDLCGAKLRAESLNPLNFSSSKPKRGVVTMVIPFSKGSAHEQPPPDLASYLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGEKLGYDTEAFAIYDVMGYVKPPIFTLCVGN 189          
BLAST of FC930221 vs. ExPASy Swiss-Prot
Match: CLPR_SYNE7 (Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechococcus elongatus (strain PCC 7942) GN=clpR PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.914e-25
Identity = 56/108 (51.85%), Postives = 73/108 (67.59%), Query Frame = 1
Query:  316 PFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPS----------VTELILAEFLYLQYEDAEKPIYLYINSTGTT-KGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 606
            P+    ++  PPPDL S L K RI+YLGM    S          VTELI+A+ LYL++++ EKPIY YINSTGT+   G+ +GYETEAFAI D M Y+KPP+ T+C+G
Sbjct:   11 PYYGDVSYRTPPPDLPSLLLKERIIYLGMPLFSSDDVKRQVGFDVTELIIAQLLYLEFDNPEKPIYFYINSTGTSWYTGDAIGYETEAFAICDTMRYIKPPVHTICIG 118          
BLAST of FC930221 vs. ExPASy Swiss-Prot
Match: CLPR_SYNY3 (Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechocystis sp. (strain PCC 6803) GN=clpR PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.482e-24
Identity = 55/102 (53.92%), Postives = 72/102 (70.59%), Query Frame = 1
Query:  334 AWEQPPPDLASYLYKNRIVYLGMSFVPS----------VTELILAEFLYLQYEDAEKPIYLYINSTGTT-KGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 606
            A++ PPPDL S L K RIVYLGM    S          VT+LI+A+ LYLQ++D +KPIY YINSTGT+   G+ +G+ETEAFAI D + Y+KPP+ T+C+G
Sbjct:   15 AFKTPPPDLESLLLKERIVYLGMPLFSSDEVKQQVGIDVTQLIIAQLLYLQFDDPDKPIYFYINSTGTSWYTGDAVGFETEAFAICDTLNYIKPPVHTICIG 116          
BLAST of FC930221 vs. ExPASy Swiss-Prot
Match: CLPR3_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic OS=Arabidopsis thaliana GN=CLPR3 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.104e-22
Identity = 51/88 (57.95%), Postives = 67/88 (76.14%), Query Frame = 1
Query:  346 PPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTK-GGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 606
            PPPDL S L   RIVY+GM  VP+VTEL++AE +YLQ+ D ++PIY+YINSTGTT+  GE +G E+E FAIYD +  +K  + T+CVG
Sbjct:  118 PPPDLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDGETVGMESEGFAIYDSLMQLKNEVHTVCVG 205          
BLAST of FC930221 vs. ExPASy Swiss-Prot
Match: CLPR1_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic OS=Arabidopsis thaliana GN=CLPR1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.675e-18
Identity = 46/87 (52.87%), Postives = 61/87 (70.11%), Query Frame = 1
Query:  349 PPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGT-TKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 606
            PPDL S L   RI YLGM  VP+VTEL++A+F++L Y++  KPIYLYINS GT  +  E +G ETEA+AI D + Y K  ++T+  G
Sbjct:  169 PPDLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSPGTQNEKMETVGSETEAYAIADTISYCKSDVYTINCG 255          
BLAST of FC930221 vs. ExPASy Swiss-Prot
Match: CLPP2_GLOVI (ATP-dependent Clp protease proteolytic subunit 2 OS=Gloeobacter violaceus GN=clpP2 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.382e-17
Identity = 45/96 (46.88%), Postives = 59/96 (61.46%), Query Frame = 1
Query:  319 FTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 606
            ++    +  PPPDL S L   RIVYLG      V EL++A+ LYL+ ED  KPI +YINS G        G+ET AFA+YD M +V+ PI T+C+G
Sbjct:   16 YSGDYGFRTPPPDLPSLLLNERIVYLGTPINDVVAELLIAQLLYLESEDNAKPIEIYINSPGVA------GFETSAFAVYDTMRHVRMPIKTICLG 105          
BLAST of FC930221 vs. ExPASy Swiss-Prot
Match: CLPP_THEPX (ATP-dependent Clp protease proteolytic subunit OS=Thermoanaerobacter sp. (strain X514) GN=clpP PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.559e-13
Identity = 39/84 (46.43%), Postives = 52/84 (61.90%), Query Frame = 1
Query:  355 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 606
            D+ S L K+RIV+LG     +   L++A+ L+L+ ED +K I+LYINS G        G  T  FAIYD M Y+KP + TLCVG
Sbjct:   19 DIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPG--------GSITAGFAIYDTMQYIKPDVVTLCVG 94          
BLAST of FC930221 vs. ExPASy Swiss-Prot
Match: CLPP_THEP3 (ATP-dependent Clp protease proteolytic subunit OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=clpP PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.559e-13
Identity = 39/84 (46.43%), Postives = 52/84 (61.90%), Query Frame = 1
Query:  355 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 606
            D+ S L K+RIV+LG     +   L++A+ L+L+ ED +K I+LYINS G        G  T  FAIYD M Y+KP + TLCVG
Sbjct:   19 DIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPG--------GSITAGFAIYDTMQYIKPDVVTLCVG 94          
BLAST of FC930221 vs. ExPASy Swiss-Prot
Match: CLPP_PELCD (ATP-dependent Clp protease proteolytic subunit OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=clpP PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.929e-13
Identity = 40/84 (47.62%), Postives = 52/84 (61.90%), Query Frame = 1
Query:  355 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 606
            D+ S L K+RI++LG +    V  LI+A+ L+L+ ED EK I+LYINS G        G  T   AIYD M YV+ P+ TLCVG
Sbjct:   19 DIFSRLLKDRIIFLGGAVDDQVANLIIAQMLFLESEDPEKEIFLYINSPG--------GVVTAGMAIYDTMQYVRCPVSTLCVG 94          
BLAST of FC930221 vs. ExPASy Swiss-Prot
Match: CLPP_GEOUR (ATP-dependent Clp protease proteolytic subunit OS=Geobacter uraniireducens (strain Rf4) GN=clpP PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.929e-13
Identity = 37/84 (44.05%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  355 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 606
            D+ S L K+RIV+LG +   +++ L++A+ L+L+ ED +K I+LYINS G        G  T   AIYD M Y+K P+ T+CVG
Sbjct:   18 DIYSRLLKDRIVFLGGAIDDAISNLVIAQLLFLEAEDPDKDIHLYINSPG--------GVVTAGMAIYDTMRYIKAPVSTICVG 93          
The following BLAST results are available for this feature:
BLAST of FC930221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
CLPR4_ARATH2.597e-6468.25ATP-dependent Clp protease proteolytic subunit-rel... [more]
CLPR_SYNE76.914e-2551.85Putative ATP-dependent Clp protease proteolytic su... [more]
CLPR_SYNY34.482e-2453.92Putative ATP-dependent Clp protease proteolytic su... [more]
CLPR3_ARATH1.104e-2257.95ATP-dependent Clp protease proteolytic subunit-rel... [more]
CLPR1_ARATH3.675e-1852.87ATP-dependent Clp protease proteolytic subunit-rel... [more]
CLPP2_GLOVI2.382e-1746.88ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_THEPX3.559e-1346.43ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEP33.559e-1346.43ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PELCD7.929e-1347.62ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOUR7.929e-1344.05ATP-dependent Clp protease proteolytic subunit OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34005B01EF PostHarvC1 Citrus clementina cDNA clone C34005B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930221 ID=FC930221; Name=FC930221; organism=Citrus clementina; type=EST; length=653bp
TCGCCGGGGACAGTTTGCTAATTGCTAATCCTCAGCCTTTTCACTCTTGC
TCTCCAACAACTCCGCTACCAAATGGAAGTAGCCACCGCATCAGCGCCGA
TCTTCGGGCTCCGCACGCGCATGTTAGCAACACCACCACGCACCTCTCCA
CGAACCGTAAATTGTAACCGAAACCTATCCACCAGCTTCATCTCTCCATT
CGCAAACGGCAGCGTTTCCTCCGACTTCTCCGGGCTCAGGCTCCGACCCG
ATTGCCTCAATCCGGATTCATTCTGCAAGTCCAAGCCTAGGAGCCCCGTC
ATCACCATGGTCATTCCTTTTACTAGTGGAACTGCATGGGAGCAACCTCC
ACCAGACTTGGCATCTTATTTGTACAAGAATCGAATTGTTTACTTGGGCA
TGTCTTTTGTTCCTTCTGTCACAGAGCTGATTCTTGCTGAGTTCCTTTAC
CTGCAGTATGAAGATGCTGAGAAGCCCATTTACTTATACATAAACTCTAC
GGGAACAACCAAGGGTGGCGAGAAGTTGGGTTATGAAACTGAGGCTTTTG
CGATATATGATGTTATGGGTTATGTCAAGCCGCCTATATTTACTCTTTGT
GTCGGCAATGCTTGGGGTGAGGCAGCGCTTCTCTTGGGTGCCGGTGCCAA
GGA
back to top