FC930223

Overview
NameFC930223
Unique NameFC930223
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12665 contig Ccv1_Contig12665:98..529. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL81_ARATH (60S ribosomal protein L8-1 OS=Arabidopsis thaliana GN=RPL8A PE=2 SV=2)

HSP 1 Score: 247.669 bits (631), Expect = 1.532e-65
Identity = 118/144 (81.94%), Postives = 130/144 (90.28%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPDNDT 432
            GRVIRAQR GAGS FKSHTHHRKGPA+FRSL F E NGYLKGVV +II DPGRGAPL +VTFRHPFR+ KQ ELF+AAEGMYT QF+YC KKATL+ GNVLP+RSIPEGAVVCNVEHHVGDRGVLARASG YA++I+HNPD+DT
Sbjct:    2 GRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVTFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIAHNPDSDT 145          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL83_ARATH (60S ribosomal protein L8-3 OS=Arabidopsis thaliana GN=RPL8C PE=2 SV=2)

HSP 1 Score: 245.743 bits (626), Expect = 5.820e-65
Identity = 116/144 (80.56%), Postives = 128/144 (88.89%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPDNDT 432
            GRVIRAQR GAGS FKSHTHHRKGPA+FRSL F E NGYLKGVV +II DPGRGAPL +V FRHPFR+ KQ ELF+AAEGMYT QF+YC KKATL+ GNVLP+RSIPEGAV+CNVEHHVGDRGV ARASG YA++I+HNPDNDT
Sbjct:    2 GRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVAFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVIAHNPDNDT 145          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL8_SOLLC (60S ribosomal protein L8 OS=Solanum lycopersicum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 1.098e-63
Identity = 115/144 (79.86%), Postives = 125/144 (86.81%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPDNDT 432
            GRVIRAQR GAGS FKSHTHHRKGPA+FR+L F E NGYLKGV+ ++I DPGRGAPL +VTFRHPFRY  Q ELF+AAEGMYT QFVYC KKATLM GNVLP+RSIPEGAVVCNVEH VGDRGV AR SG YA++ISHNPDN T
Sbjct:    2 GRVIRAQRKGAGSVFKSHTHHRKGPARFRTLDFGERNGYLKGVITEVIHDPGRGAPLARVTFRHPFRYKHQKELFVAAEGMYTGQFVYCGKKATLMVGNVLPLRSIPEGAVVCNVEHKVGDRGVFARCSGDYAIVISHNPDNGT 145          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL8_TOBAC (60S ribosomal protein L8 OS=Nicotiana tabacum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 3.194e-63
Identity = 114/144 (79.17%), Postives = 125/144 (86.81%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPDNDT 432
            GR+IRAQR GAGS FKSHTHHRKGPA+FRSL F E NGYLKGV+ ++I DPGRGAPL +VTFR+PFRY  Q ELF+AAEGMYT QFVYC KKATLM GNVLP+RSIPEGAVVCNVEH VGDRGV AR SG YA++ISHNPDN T
Sbjct:    2 GRLIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEVIHDPGRGAPLARVTFRYPFRYNHQKELFVAAEGMYTGQFVYCGKKATLMVGNVLPLRSIPEGAVVCNVEHKVGDRGVFARCSGAYAIVISHNPDNGT 145          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL82_ARATH (60S ribosomal protein L8-2 OS=Arabidopsis thaliana GN=RPL8B PE=2 SV=2)

HSP 1 Score: 228.794 bits (582), Expect = 7.363e-60
Identity = 110/145 (75.86%), Postives = 126/145 (86.90%), Query Frame = 1
Query:    1 GRVIRAQRMGA-GSGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPDNDT 432
            GRVIRAQR GA GS FKSHTHHRKGPA+FRSL + E NGYLKG+V +II DPGRGAPL +V FRHPFRYMKQ ELF+AAEGMYT Q++YC KKA LM GNVLP+ SIPEGAV+CNVE HVGDRG LARASG YA++I+HNP+++T
Sbjct:    2 GRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLARVAFRHPFRYMKQKELFVAAEGMYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNT 146          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL8_XENLA (60S ribosomal protein L8 OS=Xenopus laevis GN=rpl8 PE=2 SV=3)

HSP 1 Score: 189.504 bits (480), Expect = 4.950e-48
Identity = 91/141 (64.54%), Postives = 110/141 (78.01%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423
            GRVIR QR GAGS FK+H  HRKG A+ R++ F+E NGY+KG+V  II DPGRGAPL +V FR P+R+ K+ ELF+AAEG++T QFVYC KKA L  GNVLPV ++PEG +VC VE   GDRG LARASG YA +ISHNP+
Sbjct:    2 GRVIRGQRKGAGSVFKAHVKHRKGAAKLRAIDFAERNGYIKGIVKDIIHDPGRGAPLAKVAFRDPYRFKKRTELFVAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCVEEKPGDRGKLARASGNYATVISHNPE 142          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL8_XENTR (60S ribosomal protein L8 OS=Xenopus tropicalis GN=rpl8 PE=2 SV=3)

HSP 1 Score: 187.193 bits (474), Expect = 2.457e-47
Identity = 90/141 (63.83%), Postives = 110/141 (78.01%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423
            GRVIR QR GAGS FK+H  HRKG A+ R++ F+E +GY+KG+V  II DPGRGAPL +V FR P+R+ K+ ELF+AAEG++T QFVYC KKA L  GNVLPV ++PEG +VC VE   GDRG LARASG YA +ISHNP+
Sbjct:    2 GRVIRGQRKGAGSVFKAHVKHRKGAAKLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVAFRDPYRFKKRTELFVAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCVEEKPGDRGKLARASGNYATVISHNPE 142          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL8_RAT (60S ribosomal protein L8 OS=Rattus norvegicus GN=Rpl8 PE=2 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 9.335e-47
Identity = 89/141 (63.12%), Postives = 110/141 (78.01%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423
            GRVIR QR GAGS F++H  HRKG A+ R++ F+E +GY+KG+V  II DPGRGAPL +V FR P+R+ K+ ELFIAAEG++T QFVYC KKA L  GNVLPV ++PEG +VC +E   GDRG LARASG YA +ISHNP+
Sbjct:    2 GRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPE 142          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL8_PONAB (60S ribosomal protein L8 OS=Pongo abelii GN=RPL8 PE=2 SV=3)

HSP 1 Score: 185.267 bits (469), Expect = 9.335e-47
Identity = 89/141 (63.12%), Postives = 110/141 (78.01%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423
            GRVIR QR GAGS F++H  HRKG A+ R++ F+E +GY+KG+V  II DPGRGAPL +V FR P+R+ K+ ELFIAAEG++T QFVYC KKA L  GNVLPV ++PEG +VC +E   GDRG LARASG YA +ISHNP+
Sbjct:    2 GRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPE 142          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL8_MOUSE (60S ribosomal protein L8 OS=Mus musculus GN=Rpl8 PE=2 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 9.335e-47
Identity = 89/141 (63.12%), Postives = 110/141 (78.01%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423
            GRVIR QR GAGS F++H  HRKG A+ R++ F+E +GY+KG+V  II DPGRGAPL +V FR P+R+ K+ ELFIAAEG++T QFVYC KKA L  GNVLPV ++PEG +VC +E   GDRG LARASG YA +ISHNP+
Sbjct:    2 GRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPE 142          
The following BLAST results are available for this feature:
BLAST of FC930223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RL81_ARATH1.532e-6581.9460S ribosomal protein L8-1 OS=Arabidopsis thaliana... [more]
RL83_ARATH5.820e-6580.5660S ribosomal protein L8-3 OS=Arabidopsis thaliana... [more]
RL8_SOLLC1.098e-6379.8660S ribosomal protein L8 OS=Solanum lycopersicum G... [more]
RL8_TOBAC3.194e-6379.1760S ribosomal protein L8 OS=Nicotiana tabacum GN=R... [more]
RL82_ARATH7.363e-6075.8660S ribosomal protein L8-2 OS=Arabidopsis thaliana... [more]
RL8_XENLA4.950e-4864.5460S ribosomal protein L8 OS=Xenopus laevis GN=rpl8... [more]
RL8_XENTR2.457e-4763.8360S ribosomal protein L8 OS=Xenopus tropicalis GN=... [more]
RL8_RAT9.335e-4763.1260S ribosomal protein L8 OS=Rattus norvegicus GN=R... [more]
RL8_PONAB9.335e-4763.1260S ribosomal protein L8 OS=Pongo abelii GN=RPL8 P... [more]
RL8_MOUSE9.335e-4763.1260S ribosomal protein L8 OS=Mus musculus GN=Rpl8 P... [more]

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Properties
Property NameValue
Genbank descriptionC34005B03EF PostHarvC1 Citrus clementina cDNA clone C34005B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930223 ID=FC930223; Name=FC930223; organism=Citrus clementina; type=EST; length=432bp
GGTCGTGTGATTCGCGCACAGCGTATGGGTGCAGGTTCGGGCTTCAAGTC
CCACACCCACCACCGGAAGGGTCCGGCCCAGTTCCGCAGCCTCTACTTCA
GTGAGGGTAATGGTTACCTCAAGGGTGTCGTCGCACAAATTATTCTCGAT
CCGGGTCGTGGTGCCCCGCTGGACCAAGTCACCTTTCGTCACCCTTTTCG
CTACATGAAACAAAATGAGCTTTTCATTGCCGCTGAGGGTATGTACACCG
ATCAGTTCGTGTACTGCGCTAAGAAAGCCACTCTGATGGGTGGTAATGTG
CTGCCCGTTAGATCTATCCCTGAAGGAGCTGTTGTTTGCAACGTTGAGCA
TCATGTTGGTGATCGCGGTGTTTTGGCTAGAGCTTCTGGAGTTTATGCCG
TTATCATCAGTCATAACCCCGATAATGACACC
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