FC930226

Overview
NameFC930226
Unique NameFC930226
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15121 contig Ccv1_Contig15121:1..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC930226 vs. ExPASy Swiss-Prot
Match: HT1_ARATH (Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.218e-16
Identity = 48/120 (40.00%), Postives = 66/120 (55.00%), Query Frame = 1 
Query:  358 KWLVDPKLLFVGPKIGEGAHAKVYEGKYKNQNVAIKIVNRGETPEEI-AKREARFAREVAMMSRVRHRNLVKFIGACKE-PVMVIVTEXXXXXXXXXXXXNMRPRCLDIHVAIGFALDIA 711
            +W  D   LF+G K   GAH+++Y G YK + VA+K+V      EE  AK E +F  EVA++SR+ H N+V+FI ACK+ PV  I+TE               P  L I   +  ALDI+
Sbjct:   78 EWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPTHKEETRAKLEQQFKSEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGNLRMYLNKKEPYSLSIETVLRLALDIS 197
The following BLAST results are available for this feature:
BLAST of FC930226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
HT1_ARATH5.218e-1640.00Serine/threonine-protein kinase HT1 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionC34005B06EF PostHarvC1 Citrus clementina cDNA clone C34005B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930226 ID=FC930226; Name=FC930226; organism=Citrus clementina; type=EST; length=711bp
GAAGGGAAAAAAGAAAAACCAACAGTTGTCTGCAAGCTGCAACAATAAAC
GCGTTGCCTTTAATTTAATTCATCCATTCAAATCTCCTACAAATCCACCA
TCACTCTGTTTCTTGACTATCTTGCTGAGTTTTAATTTCCCAGTTGGTTA
AATTCTTTAAAAACGTCGTTTGTTAATTACTTTGGATCTGTTACTGAATG
TGGGGTGACCTTTTTCAGTCATGTATTTTTCGTTTTTGTTTAGATGAGTG
AGATGATTTGGTGAATTTTGTTTCTTGTATTTTGATGAGTTGAAAATAAA
ATAAATATGGGATCTGCAAATGGGTTCTTTTCAGCCGGAGAGTTTAGTTT
AGACTCCAAGTGGCTTGTTGATCCAAAGCTTCTTTTTGTTGGTCCAAAGA
TTGGAGAAGGAGCTCATGCTAAAGTTTATGAGGGAAAATATAAGAATCAA
AATGTTGCTATTAAAATTGTCAATAGAGGGGAAACCCCTGAAGAAATTGC
AAAGAGAGAAGCACGGTTTGCAAGAGAGGTTGCTATGATGTCCAGAGTAC
GGCATAGAAATTTAGTGAAGTTTATTGGTGCCTGCAAGGAGCCCGTCATG
GTTATTGTGACGGAGCTCTTATTGGGTGGTACGTTGCGAAAATATTTGCT
GAATATGCGGCCTAGGTGCTTGGACATACATGTGGCAATTGGTTTTGCCC
TTGATATTGCT
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