FC930228

Overview
NameFC930228
Unique NameFC930228
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15202 contig Ccv1_Contig15202:35..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930228 vs. ExPASy Swiss-Prot
Match: U183_ARATH (UPF0183 protein At3g51130 OS=Arabidopsis thaliana GN=At3g51130 PE=2 SV=2)

HSP 1 Score: 392.119 bits (1006), Expect = 1.540e-108
Identity = 184/218 (84.40%), Postives = 196/218 (89.91%), Query Frame = 3
Query:   60 LQSQKPRRRCEGTAMGAIVLDLRPGVGIGPFSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIVISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLPIGSLYMEEVH 713
            L  Q+PRRR EGTAMGA V DLRPGVGIGPFS+GMPICEAFA IEQQPNIYDVVHVKY+DE+PLKLD+VISFPDHGFHLRFDPWSQRLRL+EIFD+KRLQMRYATS+IGG STLATFVAVYALFGPTFPG+YDKER +Y LFYPGLSF FPIP QY DCC D EA LPLEFPDGTTPVTCRVSIYD S+DKKVGVG L D+A  P LP GSLYMEEVH
Sbjct:   11 LVMQRPRRRLEGTAMGATVFDLRPGVGIGPFSIGMPICEAFAQIEQQPNIYDVVHVKYYDEDPLKLDVVISFPDHGFHLRFDPWSQRLRLVEIFDVKRLQMRYATSMIGGPSTLATFVAVYALFGPTFPGIYDKERGIYSLFYPGLSFEFPIPNQYTDCCHDGEAALPLEFPDGTTPVTCRVSIYDNSSDKKVGVGKLMDRASVPPLPPGSLYMEEVH 228          
BLAST of FC930228 vs. ExPASy Swiss-Prot
Match: U183_DROME (UPF0183 protein CG7083 OS=Drosophila melanogaster GN=CG7083 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.688e-22
Identity = 64/177 (36.16%), Postives = 94/177 (53.11%), Query Frame = 3
Query:  117 LDLRPGVGIG----PFSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIVISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQ----YADCCQDREAELPLEFPDGTTPVTCRVSIYDGS 623
            L++ P + +G     F LGM   +A A I+ Q  I   V V Y D  PL +DI+I+ P  G  L FDP SQRL+ IE+F++K +++RY          L +   +   FG T PGVYD  + ++ L + GLSF FP+ ++    YA           L F +G +PV  ++S+Y GS
Sbjct:    4 LEIVPEISLGCDAWEFVLGMHFSQAIAIIQSQVGIIKGVQVLYSDTTPLGVDIIINLPQDGVRLIFDPVSQRLKTIEVFNMKLVKLRYFGVYFNSPEVLPSIEQIEHSFGATHPGVYDAAKQLFALHFRGLSFYFPVDSKLHSGYAHGLSS------LVFLNGASPVVSKMSLYAGS 174          
BLAST of FC930228 vs. ExPASy Swiss-Prot
Match: U183_CAEEL (UPF0183 protein T01G9.2 OS=Caenorhabditis elegans GN=T01G9.2 PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 5.621e-18
Identity = 45/121 (37.19%), Postives = 68/121 (56.20%), Query Frame = 3
Query:  150 FSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIVISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFP 512
            F LGMPI +  A I+Q P +   V +KY  ++P   DI+I     G  L FD  SQ ++LIE+ ++  + + Y  ++    + +AT   V   FG T PG YD + ++Y+  +PGLSF FP
Sbjct:   37 FVLGMPINQCIAMIQQHPRMLTKVELKYSKKDPFYQDIIIYIGSTGIRLYFDGLSQLIKLIEVDNLSMITLTYNDTIFSDPNNMATLDRVNEFFGSTHPGSYDDKHNIYVQSWPGLSFCFP 157          
BLAST of FC930228 vs. ExPASy Swiss-Prot
Match: CP070_RAT (UPF0183 protein C16orf70 homolog OS=Rattus norvegicus PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.116e-17
Identity = 59/194 (30.41%), Postives = 100/194 (51.55%), Query Frame = 3
Query:  150 FSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIVISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPA-QYADCCQDREAE--LPLEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLP----IGSLYMEEV 710
            F+LGMP+ +A A +++   I   V V Y ++ PL  D++++    G  L FD ++QRL++IE++D+ +++++Y        +   T   +   FG T PGVY+    ++ L + GLSF+F + +   A   +   A     L+ P G T    R+ IY G+        SL D   AP +P    +G++Y E V
Sbjct:   19 FTLGMPLAQAVAILQKHCRIIKNVQVLYSEQSPLSHDLILNLTQDGIKLLFDAFNQRLKVIEVYDLTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPGVYNSAEQLFHLNFRGLSFSFQLDSWTEAPKYEPNFAHGLASLQIPHGAT--VKRMYIYSGN--------SLQDTK-APMMPLSCFLGNVYAESV 201          
BLAST of FC930228 vs. ExPASy Swiss-Prot
Match: CP070_HUMAN (UPF0183 protein C16orf70 OS=Homo sapiens GN=C16orf70 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.361e-16
Identity = 59/194 (30.41%), Postives = 99/194 (51.03%), Query Frame = 3
Query:  150 FSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIVISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPA-QYADCCQDREAE--LPLEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLP----IGSLYMEEV 710
            F+LGMP+ +A A +++   I   V V Y ++ PL  D++++    G  L FD ++QRL++IE+ D+ +++++Y        +   T   +   FG T PGVY+    ++ L + GLSF+F + +   A   +   A     L+ P G T    R+ IY G+        SL D   AP +P    +G++Y E V
Sbjct:   19 FTLGMPLAQAVAILQKHCRIIKNVQVLYSEQSPLSHDLILNLTQDGIKLMFDAFNQRLKVIEVCDLTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPGVYNSAEQLFHLNFRGLSFSFQLDSWTEAPKYEPNFAHGLASLQIPHGAT--VKRMYIYSGN--------SLQDTK-APMMPLSCFLGNVYAESV 201          
BLAST of FC930228 vs. ExPASy Swiss-Prot
Match: CP070_MOUSE (UPF0183 protein C16orf70 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15
Identity = 57/192 (29.69%), Postives = 98/192 (51.04%), Query Frame = 3
Query:  150 FSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIVISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPA-QYADCCQDREAE--LPLEFPDGTTPVTCRVSIYDGSA--DKKVGVGSLFDKAIAPSLPIGSLYMEEV 710
            F+LGMP+ +A A +++   I   V V Y ++ PL  D++++    G  L FD ++QRL++IE+ ++ +++++Y        +   T   +   FG T PGVY+    ++ L + GLSF+F + +   A   +   A     L+ P G T    R+ IY G++  D K  V  L       S  +G++Y E V
Sbjct:   19 FTLGMPLAQAVAILQKHCRIIRNVQVLYSEQSPLSHDLILNLTQDGITLLFDAFNQRLKVIEVCELTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPGVYNSTEQLFHLNFRGLSFSFQLDSWTEAPKYEPNFAHGLASLQIPHGAT--VKRMYIYSGNSLQDTKAPVMPL-------SCFLGNVYAESV 201          
The following BLAST results are available for this feature:
BLAST of FC930228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
U183_ARATH1.540e-10884.40UPF0183 protein At3g51130 OS=Arabidopsis thaliana ... [more]
U183_DROME1.688e-2236.16UPF0183 protein CG7083 OS=Drosophila melanogaster ... [more]
U183_CAEEL5.621e-1837.19UPF0183 protein T01G9.2 OS=Caenorhabditis elegans ... [more]
CP070_RAT8.116e-1730.41UPF0183 protein C16orf70 homolog OS=Rattus norvegi... [more]
CP070_HUMAN2.361e-1630.41UPF0183 protein C16orf70 OS=Homo sapiens GN=C16orf... [more]
CP070_MOUSE1.999e-1529.69UPF0183 protein C16orf70 homolog OS=Mus musculus P... [more]
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Properties
Property NameValue
Genbank descriptionC34005B08EF PostHarvC1 Citrus clementina cDNA clone C34005B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930228 ID=FC930228; Name=FC930228; organism=Citrus clementina; type=EST; length=718bp
TTAACCGAAGAAAAGGGGAAAAAAAAAACCTAACAAAATCCAGAATCCAA
ATCCAAATGTTACAGAGCCAGAAACCCCGTCGACGTTGCGAGGGCACGGC
CATGGGCGCCATCGTTCTCGATCTTCGACCTGGCGTCGGCATCGGTCCCT
TTTCTCTCGGGATGCCGATTTGCGAAGCATTTGCTTCAATAGAACAACAG
CCTAACATCTATGATGTTGTCCATGTGAAGTACTTTGATGAGGAACCACT
GAAGCTTGATATCGTTATTAGCTTTCCAGATCATGGATTTCATCTTCGTT
TTGATCCATGGTCTCAGAGATTACGCCTTATTGAAATATTTGATATCAAA
CGGCTTCAAATGCGTTATGCCACTTCGTTGATTGGGGGATCATCAACTCT
AGCTACTTTTGTGGCGGTATATGCACTATTTGGGCCAACCTTTCCTGGAG
TTTACGACAAAGAAAGAAGTGTTTATATGCTATTCTACCCAGGGCTGTCT
TTTGCTTTTCCAATTCCAGCTCAGTATGCAGATTGCTGCCAGGATAGAGA
AGCTGAACTGCCCTTAGAGTTTCCTGATGGCACTACGCCTGTTACATGCC
GTGTCTCTATATATGATGGTTCTGCAGATAAAAAAGTTGGTGTTGGATCG
TTATTTGACAAGGCTATTGCTCCTTCGTTACCTATTGGAAGCTTGTACAT
GGAAGAGGTGCATGCTAA
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