FC930234

Overview
NameFC930234
Unique NameFC930234
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930234_ssr119 microsatellite FC930234_ssr119:119..130. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11452 contig Ccv1_Contig11452:70..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930234 vs. ExPASy Swiss-Prot
Match: IDI1_CAMAC (Isopentenyl-diphosphate Delta-isomerase I OS=Camptotheca acuminata GN=IPI1 PE=2 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 5.171e-90
Identity = 159/179 (88.83%), Postives = 167/179 (93.30%), Query Frame = 2
Query:  152 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHSMERIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYXYVNR 688
            MGDA TDAGMDAVQ+RLMFED+CILVDEND VVGH+ KYNCH ME+IES NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+ENALG RNAAQRKLLDELGI AEDVPVD+F PLGRILYKAPSDGKWGEHELDYLLFIVRDV+VNPNPDEVA+  YV R
Sbjct:    1 MGDAATDAGMDAVQKRLMFEDKCILVDENDNVVGHDTKYNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIKENALGARNAAQRKLLDELGIPAEDVPVDQFIPLGRILYKAPSDGKWGEHELDYLLFIVRDVNVNPNPDEVADIKYVTR 179          
BLAST of FC930234 vs. ExPASy Swiss-Prot
Match: IDI2_CAMAC (Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata GN=IPI2 PE=2 SV=1)

HSP 1 Score: 327.791 bits (839), Expect = 3.352e-89
Identity = 156/179 (87.15%), Postives = 167/179 (93.30%), Query Frame = 2
Query:  152 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHSMERIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYXYVNR 688
            MGD  TDAGMDAVQRRLMFEDECILVDEND VVGH+ KYNCH ME+IES NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHP YRESEL++ENALGVRNAAQRKLLDELGI AEDVPVD+F PLGR+LYKAPSDGKWGEHELDYLLFI+RDV+V+PNPDEVA+  YVN+
Sbjct:   75 MGDTATDAGMDAVQRRLMFEDECILVDENDHVVGHDTKYNCHLMEKIESDNLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPRYRESELVDENALGVRNAAQRKLLDELGIPAEDVPVDQFIPLGRMLYKAPSDGKWGEHELDYLLFIIRDVNVHPNPDEVADVKYVNQ 253          
BLAST of FC930234 vs. ExPASy Swiss-Prot
Match: IDI2_ARATH (Isopentenyl-diphosphate Delta-isomerase II OS=Arabidopsis thaliana GN=IPP2 PE=2 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 1.274e-88
Identity = 157/175 (89.71%), Postives = 164/175 (93.71%), Query Frame = 2
Query:  164 TTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHSMERIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYXYVNR 688
            T DAGMDAVQRRLMFEDECILVDE DRVVGH++KYNCH ME IE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI++NALGVRNAAQRKLLDELGI AEDVPVDEFTPLGR+LYKAPSDGKWGEHELDYLLFIVRDV V PNPDEVAE  YV+R
Sbjct:   55 TKDAGMDAVQRRLMFEDECILVDETDRVVGHDSKYNCHLMENIEAKNLLHRAFSVFLFNSKYELLLQQRSNTKVTFPLVWTNTCCSHPLYRESELIQDNALGVRNAAQRKLLDELGIVAEDVPVDEFTPLGRMLYKAPSDGKWGEHELDYLLFIVRDVKVQPNPDEVAEIKYVSR 229          
BLAST of FC930234 vs. ExPASy Swiss-Prot
Match: IDI1_CLABR (Isopentenyl-diphosphate Delta-isomerase I OS=Clarkia breweri GN=IPI1 PE=2 SV=2)

HSP 1 Score: 323.553 bits (828), Expect = 6.321e-88
Identity = 156/180 (86.67%), Postives = 168/180 (93.33%), Query Frame = 2
Query:  149 TMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHSMERIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYXYVNR 688
            TMG+   DAGMDAVQRRLMFEDECILVDEND+VVGHE+KYNCH ME+IES NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+EN LGVRNAAQRKLLDELGI AED+PVD+F PL RILYKAPSDGKWGEHELDYLLFI+RDV+++PNPDEVAE  Y+NR
Sbjct:   54 TMGEVV-DAGMDAVQRRLMFEDECILVDENDKVVGHESKYNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENCLGVRNAAQRKLLDELGIPAEDLPVDQFIPLSRILYKAPSDGKWGEHELDYLLFIIRDVNLDPNPDEVAEVKYMNR 232          
BLAST of FC930234 vs. ExPASy Swiss-Prot
Match: IDI1_ARATH (Isopentenyl-diphosphate Delta-isomerase I OS=Arabidopsis thaliana GN=IPP1 PE=2 SV=2)

HSP 1 Score: 323.168 bits (827), Expect = 8.256e-88
Identity = 155/175 (88.57%), Postives = 163/175 (93.14%), Query Frame = 2
Query:  164 TTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHSMERIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYXYVNR 688
            + DAGMDAVQRRLMFEDECILVDENDRVVGH+ KYNCH ME+IE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELIEEN LGVRNAAQRKL DELGI AEDVPVDEFTPLGR+LYKAPSDGKWGEHE+DYLLFIVRDV + PNPDEVAE  YV+R
Sbjct:    4 SNDAGMDAVQRRLMFEDECILVDENDRVVGHDTKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQQRSKTKVTFPLVWTNTCCSHPLYRESELIEENVLGVRNAAQRKLFDELGIVAEDVPVDEFTPLGRMLYKAPSDGKWGEHEVDYLLFIVRDVKLQPNPDEVAEIKYVSR 178          
BLAST of FC930234 vs. ExPASy Swiss-Prot
Match: IDI2_CLABR (Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia breweri GN=IPI2 PE=3 SV=2)

HSP 1 Score: 320.472 bits (820), Expect = 5.351e-87
Identity = 157/179 (87.71%), Postives = 167/179 (93.30%), Query Frame = 2
Query:  152 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHSMERIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYXYVNR 688
            MG+A  DAGMDAVQRRLMF+DECILVDE DRVVGHE+KYNCH  E+IES N+LHRAFSVFLFNSK+ELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+EN LGVRNAAQRKLLDELGI AEDVPVDEFTPL R+LYKAPSDGKWGEHELDYLLFIVRDV+V+PNPDEVAE  YVNR
Sbjct:   54 MGEAA-DAGMDAVQRRLMFDDECILVDEVDRVVGHESKYNCHMWEKIESGNMLHRAFSVFLFNSKFELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENNLGVRNAAQRKLLDELGIPAEDVPVDEFTPLSRMLYKAPSDGKWGEHELDYLLFIVRDVAVHPNPDEVAEIKYVNR 231          
BLAST of FC930234 vs. ExPASy Swiss-Prot
Match: IDI2_CLAXA (Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia xantiana GN=IPI2 PE=3 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 4.530e-86
Identity = 152/179 (84.92%), Postives = 165/179 (92.18%), Query Frame = 2
Query:  152 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHSMERIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYXYVNR 688
            MG+A  DAGMDAVQRRLMF+DECILVDE D VVGHE+KYNCH  E+IES N+LHRAF+VFLFNSK+ELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+EN LGVRNAAQRKLLDELGI AEDVPVDEFTP+ R+LYKAPSDGKWGEHELDYLLFIVRDV ++PNPDEVA+  YVNR
Sbjct:   57 MGEAAADAGMDAVQRRLMFDDECILVDEVDCVVGHESKYNCHLWEKIESGNMLHRAFTVFLFNSKFELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENNLGVRNAAQRKLLDELGIPAEDVPVDEFTPVSRMLYKAPSDGKWGEHELDYLLFIVRDVGIHPNPDEVADIKYVNR 235          
BLAST of FC930234 vs. ExPASy Swiss-Prot
Match: IDI1_BOVIN (Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos taurus GN=IDI1 PE=2 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 3.391e-49
Identity = 103/179 (57.54%), Postives = 129/179 (72.07%), Query Frame = 2
Query:  152 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHSMERIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYXYVNR 688
            M + +TD  +D  Q +LM E  CILVDENDR +G E K NCH  E IE   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TNTCCSHPL   SEL E +A+GVR AAQR+L  ELGI  E+VP +E   L RI YKA SD  WGEHE+DY+L + ++V++NP+P+E+  Y YV +
Sbjct:    1 MPEVSTD-DLDERQVQLMAE-MCILVDENDRRIGAETKKNCHLNENIER-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPSELEENDAIGVRRAAQRRLKAELGIPMEEVPPEEINYLTRIHYKAQSDSIWGEHEIDYILLVKKNVTLNPDPNEIKSYCYVTK 176          
BLAST of FC930234 vs. ExPASy Swiss-Prot
Match: IDI1_MACFA (Isopentenyl-diphosphate Delta-isomerase 1 OS=Macaca fascicularis GN=IDI1 PE=2 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 7.554e-49
Identity = 101/179 (56.42%), Postives = 129/179 (72.07%), Query Frame = 2
Query:  152 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHSMERIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYXYVNR 688
            M +  TD  +D  Q +L+ E  CIL+DEND  +G E K NCH  E IE   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TNTCCSHPL    EL E +ALGVR AAQR+L  ELGI  E+VP +E   L RI YKA SDG WGEHE+DY+LF+ ++V++NP+P+E+  + YV++
Sbjct:    1 MPEINTDH-LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPGELEENDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILFVRKNVTLNPDPNEIKSFCYVSK 176          
BLAST of FC930234 vs. ExPASy Swiss-Prot
Match: IDI1_HUMAN (Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo sapiens GN=IDI1 PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.289e-48
Identity = 98/170 (57.65%), Postives = 125/170 (73.53%), Query Frame = 2
Query:  179 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHSMERIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYXYVNR 688
            +D  Q +L+ E  CIL+DEND  +G E K NCH  E IE   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TNTCCSHPL   +EL E +ALGVR AAQR+L  ELGI  E+VP +E   L RI YKA SDG WGEHE+DY+L + ++V++NP+P+E+  Y YV++
Sbjct:    9 LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRKNVTLNPDPNEIKSYCYVSK 176          
The following BLAST results are available for this feature:
BLAST of FC930234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
IDI1_CAMAC5.171e-9088.83Isopentenyl-diphosphate Delta-isomerase I OS=Campt... [more]
IDI2_CAMAC3.352e-8987.15Isopentenyl-diphosphate Delta-isomerase II OS=Camp... [more]
IDI2_ARATH1.274e-8889.71Isopentenyl-diphosphate Delta-isomerase II OS=Arab... [more]
IDI1_CLABR6.321e-8886.67Isopentenyl-diphosphate Delta-isomerase I OS=Clark... [more]
IDI1_ARATH8.256e-8888.57Isopentenyl-diphosphate Delta-isomerase I OS=Arabi... [more]
IDI2_CLABR5.351e-8787.71Isopentenyl-diphosphate Delta-isomerase II OS=Clar... [more]
IDI2_CLAXA4.530e-8684.92Isopentenyl-diphosphate Delta-isomerase II OS=Clar... [more]
IDI1_BOVIN3.391e-4957.54Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos t... [more]
IDI1_MACFA7.554e-4956.42Isopentenyl-diphosphate Delta-isomerase 1 OS=Macac... [more]
IDI1_HUMAN1.289e-4857.65Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionC34005C02EF PostHarvC1 Citrus clementina cDNA clone C34005C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930234 ID=FC930234; Name=FC930234; organism=Citrus clementina; type=EST; length=689bp
AATCAACAACTCTTCTTCTTTCTCGAAGTCCCGTCTATTTTTCTCCTCTT
CCCATTTCGCCCCTAGGGTTTCTTCGATTCGCAGGCCTCTGTCCTTGAGA
GGTGCCTCTCGTTCTAGCTCTTCTTCTTCTTCCGCTCGCGCAATCAGCAC
TATGGGTGACGCTACTACTGATGCCGGCATGGACGCTGTCCAGCGCCGCC
TCATGTTTGAAGACGAATGCATTTTGGTGGATGAGAATGATCGCGTTGTT
GGTCATGAAAACAAATACAACTGTCACTCGATGGAAAGGATTGAGTCTTT
GAATTTGCTACACAGAGCCTTCAGCGTATTTTTGTTTAACTCAAAATATG
AGCTACTCCTTCAGCAACGCTCTGGAACCAAAGTTACCTTCCCTCTTGTG
TGGACTAACACCTGCTGCAGCCATCCTCTGTACCGTGAATCTGAGCTTAT
TGAGGAGAACGCTCTTGGGGTGAGGAATGCTGCACAAAGAAAGCTTTTGG
ATGAGCTGGGCATTTGTGCTGAAGATGTGCCAGTTGATGAGTTCACTCCA
CTGGGTCGCATTCTGTACAAGGCCCCTTCTGATGGCAAGTGGGGGGAGCA
TGAACTTGACTACTTACTTTTCATTGTCCGAGATGTTAGTGTTAACCCAA
ATCCTGATGAAGTAGCCGAGTATNAATATGTCAACCGGG
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