FC930239

Overview
NameFC930239
Unique NameFC930239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15122 contig Ccv1_Contig15122:1..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930239 vs. ExPASy Swiss-Prot
Match: MDAR_SOLLC (Monodehydroascorbate reductase OS=Solanum lycopersicum GN=AFRR PE=1 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 9.694e-95
Identity = 173/214 (80.84%), Postives = 187/214 (87.38%), Query Frame = 2
Query:   74 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 715
            MAEKSFKYVI+GGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEG ARLPGFHVCVGSGGER LPEWY EKGI LILSTEIV+AD+ASKTL+SA G  FKYQ LVIATG+TVL+L+DFGV+GAD+KNIFYLREIDDAD+LVE                YIGLELSA L++NNI+V+MVYPEPWCMPRLFT  IAAFYEGY
Sbjct:    1 MAEKSFKYVIVGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGAARLPGFHVCVGSGGERQLPEWYAEKGISLILSTEIVKADLASKTLVSAAGESFKYQTLVIATGTTVLKLSDFGVQGADSKNIFYLREIDDADQLVEALKAKKNGKAVVVGGGYIGLELSAVLRLNNIEVNMVYPEPWCMPRLFTEGIAAFYEGY 214          
BLAST of FC930239 vs. ExPASy Swiss-Prot
Match: MDAR3_ARATH (Probable monodehydroascorbate reductase, cytoplasmic isoform 3 OS=Arabidopsis thaliana GN=At3g52880 PE=1 SV=1)

HSP 1 Score: 340.887 bits (873), Expect = 4.073e-93
Identity = 168/214 (78.50%), Postives = 188/214 (87.85%), Query Frame = 2
Query:   74 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 715
            MAEKSFKY+ILGGGVSAGYAA+EFA QGV+PGELA+ISKEAVAPYERPALSK YLFPEG ARLPGFH CVGSGGE+LLPE YK+KGIELILSTEIV+AD+++K+L+SATG +FKYQ L+IATGSTVLRLTDFGV+GAD+KNI YLREIDDADKLVE                YIGLELSA L+INN+DV+MV+PEPWCMPRLFTADIAAFYE Y
Sbjct:    1 MAEKSFKYIILGGGVSAGYAAKEFANQGVQPGELAVISKEAVAPYERPALSKGYLFPEGAARLPGFHCCVGSGGEKLLPESYKQKGIELILSTEIVKADLSAKSLVSATGDVFKYQTLIIATGSTVLRLTDFGVKGADSKNILYLREIDDADKLVEAIKAKKGGKAVVVGGGYIGLELSAVLRINNLDVTMVFPEPWCMPRLFTADIAAFYETY 214          
BLAST of FC930239 vs. ExPASy Swiss-Prot
Match: MDARS_CUCSA (Monodehydroascorbate reductase, seedling isozyme OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 1.003e-91
Identity = 166/214 (77.57%), Postives = 183/214 (85.51%), Query Frame = 2
Query:   74 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 715
            MA+++FKYVILGGGV+AGYAAREF KQG+ PGELAIISKEAVAPYERPALSKAYLFPE  ARLPGFHVCVGSGGERLLP+WYKEKGIELILSTEIV AD+ +K L SA G I+ YQ L+IATGSTV++L+DFGV+GADAKNIFYLREIDDAD+LVE                YIGLEL AAL+INN DVSMVYPEPWCMPRLFT +IAAFYEGY
Sbjct:    1 MADETFKYVILGGGVAAGYAAREFVKQGLNPGELAIISKEAVAPYERPALSKAYLFPESPARLPGFHVCVGSGGERLLPDWYKEKGIELILSTEIVEADLPAKRLRSAHGKIYNYQTLIIATGSTVIKLSDFGVQGADAKNIFYLREIDDADQLVEAIKAKENGKVVVVGGGYIGLELGAALRINNFDVSMVYPEPWCMPRLFTPEIAAFYEGY 214          
BLAST of FC930239 vs. ExPASy Swiss-Prot
Match: MDAR_PEA (Monodehydroascorbate reductase OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 8.788e-88
Identity = 161/210 (76.67%), Postives = 175/210 (83.33%), Query Frame = 2
Query:   86 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 715
            SFKY+I+GGGVSAGYAAREF KQGV PGELAIISKEAVAPYERPALSKAYLFPE  ARLPGFH CVGSGGERLLPEWY EKGI+L LSTEIV AD+A+K L SA G  F YQ LVIATGS V+RLTDFGV GA+AKNIFYLRE+DDADKL E                YIGLELSA LK+N++DV+MVYPEPWCMPRLFT++IAAFYEGY
Sbjct:    4 SFKYIIIGGGVSAGYAAREFVKQGVHPGELAIISKEAVAPYERPALSKAYLFPESPARLPGFHTCVGSGGERLLPEWYSEKGIQLYLSTEIVSADLAAKFLKSANGEHFDYQTLVIATGSAVIRLTDFGVIGANAKNIFYLREVDDADKLYEAIKRKKNAKRVVVGGGYIGLELSAVLKLNDLDVTMVYPEPWCMPRLFTSEIAAFYEGY 213          
BLAST of FC930239 vs. ExPASy Swiss-Prot
Match: MDAR4_ARATH (Probable monodehydroascorbate reductase, cytoplasmic isoform 4 OS=Arabidopsis thaliana GN=At5g03630 PE=1 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 1.775e-80
Identity = 148/212 (69.81%), Postives = 168/212 (79.25%), Query Frame = 2
Query:   80 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 715
            EKSFKYVI+GGGV+AGYAAREF  QGVKPGELAIIS+E V PYERPALSK Y+  E  A LP F+V  G GGER  P+WYKEKGIELIL TEIV+AD+A+KTL+S TG +FKYQ L+ ATGS+V+RL+DFGV GADAKNIFYLRE++DAD L                  YIGLEL AALK NN+DV+MVYPEPWCMPRLFTA IA+FYEGY
Sbjct:    4 EKSFKYVIVGGGVAAGYAAREFFNQGVKPGELAIISREQVPPYERPALSKGYIHLENKATLPNFYVAAGIGGERQFPQWYKEKGIELILGTEIVKADLAAKTLVSGTGQVFKYQTLLAATGSSVIRLSDFGVPGADAKNIFYLRELEDADYLAYAMETKEKGKAVVVGGGYIGLELGAALKANNLDVTMVYPEPWCMPRLFTAGIASFYEGY 215          
BLAST of FC930239 vs. ExPASy Swiss-Prot
Match: MDAR1_ARATH (Probable monodehydroascorbate reductase, cytoplasmic isoform 1 OS=Arabidopsis thaliana GN=At3g09940 PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.365e-64
Identity = 122/213 (57.28%), Postives = 159/213 (74.65%), Query Frame = 2
Query:   80 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKL-VEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 715
            EKS+KYVI+GGGV+ GYAAREF+ QG+KPGELAIISKE V P+ERP L+K Y+  E    L   +VC G+G  +  P WYKEKGI+LI+ TEIV+AD+ASKTL+S  G I+KYQ L+IATGST +RL++ GV+ AD KNIFYLREI+D+D+L +                 ++GLE+S+AL+ NN +V+MV+PEPW + R FTA+IA+FYE Y
Sbjct:    4 EKSYKYVIIGGGVAGGYAAREFSNQGLKPGELAIISKEPVPPFERPELTKVYIDLEVNPTLANIYVCAGTGEAKQYPNWYKEKGIDLIVGTEIVKADLASKTLVSDDGKIYKYQTLLIATGSTNIRLSEIGVQEADVKNIFYLREIEDSDELALAMELYVQRGKAVIIGGGFLGLEISSALRANNHEVTMVFPEPWLVHRFFTAEIASFYESY 216          
BLAST of FC930239 vs. ExPASy Swiss-Prot
Match: MDAR2_ARATH (Probable monodehydroascorbate reductase, cytoplasmic isoform 2 OS=Arabidopsis thaliana GN=At3g27820 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.283e-62
Identity = 115/211 (54.50%), Postives = 149/211 (70.62%), Query Frame = 2
Query:   83 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 715
            ++F YVILGGGV+AGYAA EF ++GV  GEL IIS+E VAPYERPALSK +L PE  ARLP FH CVG+  E+L P+WYK+ GIEL+L T +   D+  KTLLS+TG    Y+ L+IATG+  L+L +FGVEG+DA+N+ YLR++ DA++L                  YIG+E +A+L IN I+V+MV+PE  CM RLFT  IA+ YE Y
Sbjct:    3 RAFVYVILGGGVAAGYAALEFTRRGVSDGELCIISEEPVAPYERPALSKGFLLPEAPARLPSFHTCVGANDEKLTPKWYKDHGIELVLGTRVKSVDVRRKTLLSSTGETISYKFLIIATGARALKLEEFGVEGSDAENVCYLRDLADANRLATVIQSSSNGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASLYEDY 213          
BLAST of FC930239 vs. ExPASy Swiss-Prot
Match: MDARP_ARATH (Monodehydroascorbate reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g63940 PE=2 SV=3)

HSP 1 Score: 183.726 bits (465), Expect = 8.321e-46
Identity = 100/215 (46.51%), Postives = 131/215 (60.93%), Query Frame = 2
Query:   71 SMAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFP--EGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYE 709
            S A ++ ++VI+GGG +AGYAAR F + G+  G L I++KEA APYERPAL+KAYLFP  +  ARLPGFH CVG GGER  P+WYKEKGIE+I    +  AD   +TL +  G   KY  L+IATG T  R  D    G     + Y+RE+ DAD L+                 YIG+E++AA    N+D ++V+PE   + RLFT  +A  YE
Sbjct:   55 SFANENREFVIVGGGNAAGYAARTFVENGMADGRLCIVTKEAYAPYERPALTKAYLFPPEKKPARLPGFHTCVGGGGERQTPDWYKEKGIEVIYEDPVAGADFEKQTLTTDAGKQLKYGSLIIATGCTASRFPD--KIGGHLPGVHYIREVADADSLI--ASLGKAKKIVIVGGGYIGMEVAAAAVAWNLDTTIVFPEDQLLQRLFTPSLAQKYE 265          
BLAST of FC930239 vs. ExPASy Swiss-Prot
Match: RURE_PSEOL (Rubredoxin-NAD(+) reductase OS=Pseudomonas oleovorans GN=alkT PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.692e-14
Identity = 65/201 (32.34%), Postives = 98/201 (48.76%), Query Frame = 2
Query:   98 VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPE-WYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDAD----KLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMPRLFT 685
            V++G G +   AA    + G K GE+ I S+E+VAPY+RP LSKA+L  E           +      L PE +Y    I + L+T IV  D+  K + S  G  + Y+ L++AT ++  RLT    EG++   + YLR ++DA     KLVE                 IGLE+++A       V+++   P  M R+ T
Sbjct:    4 VVVGAGTAGVNAAFWLRQYGYK-GEIRIFSRESVAPYQRPPLSKAFLTSE-----------IAESAVPLKPEGFYTNNNITISLNTPIVSIDVGRKIVSSKDGKEYAYEKLILATPASARRLT---CEGSELSGVCYLRSMEDAKNLRRKLVE------SASVVVLGGGVIGLEVASAAVGLGKRVTVIEATPRVMARVVT 183          
BLAST of FC930239 vs. ExPASy Swiss-Prot
Match: YDGE_SCHPO (Putative flavoprotein C26F1.14C OS=Schizosaccharomyces pombe GN=SPAC26F1.14c PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 54/183 (29.51%), Postives = 82/183 (44.81%), Query Frame = 2
Query:  101 ILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLL--SATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVE-XXXXXXXXXXXXXXXXYIGLELSAALKINNIDV 640
            I+GGG  A  AA    ++  K G++ I ++E   PY+RP LSK+ L       L                E+Y +  I    +T++ + D+A K +   S       Y  L++ATG    +L    + G D+KN++ LR I DA KL                   +IGLEL+  LK +N+ V
Sbjct:  162 IIGGGKGASVAAEYLREKNFK-GKITIFTREDEVPYDRPKLSKSLLHDISKLALRS-------------KEYYDDLDISFHFNTDVTKIDLAEKKIYCGSDEKPTESYTKLILATGGEPNKLP---IPGLDSKNVYLLRSIADASKLAAVTTEAGDKKNIVIIGSSFIGLELAVVLKDHNVSV 327          
The following BLAST results are available for this feature:
BLAST of FC930239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
MDAR_SOLLC9.694e-9580.84Monodehydroascorbate reductase OS=Solanum lycopers... [more]
MDAR3_ARATH4.073e-9378.50Probable monodehydroascorbate reductase, cytoplasm... [more]
MDARS_CUCSA1.003e-9177.57Monodehydroascorbate reductase, seedling isozyme O... [more]
MDAR_PEA8.788e-8876.67Monodehydroascorbate reductase OS=Pisum sativum PE... [more]
MDAR4_ARATH1.775e-8069.81Probable monodehydroascorbate reductase, cytoplasm... [more]
MDAR1_ARATH1.365e-6457.28Probable monodehydroascorbate reductase, cytoplasm... [more]
MDAR2_ARATH8.283e-6254.50Probable monodehydroascorbate reductase, cytoplasm... [more]
MDARP_ARATH8.321e-4646.51Monodehydroascorbate reductase, chloroplastic OS=A... [more]
RURE_PSEOL1.692e-1432.34Rubredoxin-NAD(+) reductase OS=Pseudomonas oleovor... [more]
YDGE_SCHPO5.095e-1129.51Putative flavoprotein C26F1.14C OS=Schizosaccharom... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34005C07EF PostHarvC1 Citrus clementina cDNA clone C34005C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930239 ID=FC930239; Name=FC930239; organism=Citrus clementina; type=EST; length=717bp
GCCTCATCGTCCTAATTTCTCACTATAAATAGAAACAGAAATCGTTGAGC
ATTTAACTTTTTTCGATCGATCAATGGCGGAGAAGAGCTTCAAGTACGTG
ATCCTCGGTGGCGGTGTCTCTGCTGGATATGCAGCTAGGGAGTTTGCTAA
GCAGGGTGTTAAGCCAGGCGAGCTGGCAATTATCTCCAAAGAAGCGGTTG
CTCCGTATGAGCGTCCAGCACTTAGCAAGGCATATCTTTTCCCTGAGGGA
ACTGCTAGACTTCCCGGTTTCCATGTCTGTGTTGGAAGTGGTGGAGAGAG
ACTGCTTCCTGAGTGGTACAAAGAGAAAGGAATCGAATTGATCCTCAGCA
CGGAAATAGTCAGAGCAGATATTGCTTCCAAGACTCTCCTTAGTGCAACT
GGGCTTATCTTTAAGTACCAGATTTTAGTAATTGCAACTGGTTCTACAGT
TTTACGGTTGACTGATTTTGGTGTTGAAGGTGCTGATGCCAAAAATATCT
TCTACTTAAGAGAAATTGATGATGCTGATAAGCTGGTTGAAGCAATAAAA
GCAAAGAAGAATGGGAAGGCAGTGGTTGTTGGAGGAGGATACATTGGTCT
TGAGCTTAGTGCAGCTTTAAAAATAAATAATATTGATGTTAGCATGGTTT
ATCCTGAACCATGGTGCATGCCTCGTCTTTTCACTGCGGATATTGCTGCT
TTCTATGAGGGTTATTA
back to top