FC930240

Overview
NameFC930240
Unique NameFC930240
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15123 contig Ccv1_Contig15123:1..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930240 vs. ExPASy Swiss-Prot
Match: P5CR_SOYBN (Pyrroline-5-carboxylate reductase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.648e-78
Identity = 149/218 (68.35%), Postives = 172/218 (78.90%), Query Frame = 2
Query:   59 MDAFPIPAESFILGFIGAGKMAESIVKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGA 712
            M+ FPIPAES+ LGFIGAGKMAESI +G  +SGVLPP RI TAVH NL RR AFES GV VL  N+                       ++ PLL++ KLLVSVAAG KLKDLQEW G+ RFIRVMPNTP+AVG+AA+VMSLGG+ATEEDG +I +LFGS+GKIW+A+EK FDAITGLSGSGPAY++LAIEALADGGVAAGLPR+L+L LASQTVLGA
Sbjct:    1 MEIFPIPAESYTLGFIGAGKMAESIARGAVRSGVLPPSRIRTAVHFNLARRGAFESFGVTVLPSNDDVVRESDVVVLSVKPQLVKDVVSKLTPLLTKHKLLVSVAAGTKLKDLQEWAGNDRFIRVMPNTPAAVGQAASVMSLGGSATEEDGNIIAQLFGSIGKIWKAEEKYFDAITGLSGSGPAYVYLAIEALADGGVAAGLPRDLSLSLASQTVLGA 218          
BLAST of FC930240 vs. ExPASy Swiss-Prot
Match: P5CR_ACTCH (Pyrroline-5-carboxylate reductase OS=Actinidia chinensis PE=2 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 4.794e-78
Identity = 152/214 (71.03%), Postives = 171/214 (79.91%), Query Frame = 2
Query:   71 PIPAESFILGFIGAGKMAESIVKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGA 712
            PIP +++ LGFIGAGKMAESI +GV KSGVLP  RI TA H    RR+AFES GVKVL  N+                      +Q+RPLLS K+LLVS+ AGVKLK+L++W GHSRFIRVMPNTP+AVGEAA+VMSLG TAT EDGELI KLFG++GKIW+ADEKLFDA+TGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGA
Sbjct:    8 PIPTDTYKLGFIGAGKMAESIARGVVKSGVLPASRIRTA-HLGSARREAFESFGVKVLDRNDQVVEDSDVIIFSVKPQIVKEVVLQLRPLLSEKQLLVSIVAGVKLKELEDWAGHSRFIRVMPNTPAAVGEAASVMSLGATATGEDGELITKLFGAIGKIWKADEKLFDAVTGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGA 220          
BLAST of FC930240 vs. ExPASy Swiss-Prot
Match: P5CR1_ARATH (Pyrroline-5-carboxylate reductase OS=Arabidopsis thaliana GN=PROC1 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.822e-77
Identity = 149/218 (68.35%), Postives = 169/218 (77.52%), Query Frame = 2
Query:   59 MDAFPIPAESFILGFIGAGKMAESIVKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGA 712
            M+  PIPAESF +GFIGAGKMAESI +GV  SGVLPP+RICTAVHSNL RRD FES GV V S +                        +++  LS+ K+LVSVAAG+KL DLQEW+G  RFIRVMPNTP+AVGEAA+VMSLG  ATEEDG ++  LFG+VGKI +ADEK+FDA+TGLSGSGPAYIFLAIEALADGGVAAGLPRELAL LASQTVLGA
Sbjct:    1 MEILPIPAESFKVGFIGAGKMAESIARGVVASGVLPPNRICTAVHSNLNRRDVFESFGVNVFSTSEEVVKESDVVIFSVKPQVVKKAVTELKSKLSKNKILVSVAAGIKLNDLQEWSGQDRFIRVMPNTPAAVGEAASVMSLGTGATEEDGAIVAMLFGAVGKILKADEKMFDAVTGLSGSGPAYIFLAIEALADGGVAAGLPRELALSLASQTVLGA 218          
BLAST of FC930240 vs. ExPASy Swiss-Prot
Match: P5CR_PEA (Pyrroline-5-carboxylate reductase OS=Pisum sativum GN=PROC PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.181e-76
Identity = 148/218 (67.89%), Postives = 172/218 (78.90%), Query Frame = 2
Query:   59 MDAFPIPAESFILGFIGAGKMAESIVKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGA 712
            M+  PI ++S+ LGFIGAGKMAESI KG ++SGVLP  RI TA HSN  RR AFESIG+ VLS N+                      ++++PLL++ KLLVSVAAG+KLKDLQEW GH RFIRVMPNTP+AVG+AA+VMSLGG ATEED  LI +LFGS+GKIW+AD+K FDAITGLSGSGPAYI+LAIEALADGGVAAGLPR+LAL LASQTVLGA
Sbjct:    1 MEILPILSDSYTLGFIGAGKMAESIAKGASRSGVLPSSRIVTA-HSNPSRRAAFESIGITVLSSNDDVVRASNVVVFSVKPQLVKDVVLKLKPLLTKDKLLVSVAAGIKLKDLQEWAGHERFIRVMPNTPAAVGQAASVMSLGGAATEEDANLISQLFGSIGKIWKADDKFFDAITGLSGSGPAYIYLAIEALADGGVAAGLPRDLALSLASQTVLGA 217          
BLAST of FC930240 vs. ExPASy Swiss-Prot
Match: P5CR_METAC (Pyrroline-5-carboxylate reductase OS=Methanosarcina acetivorans GN=proC PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.367e-31
Identity = 78/207 (37.68%), Postives = 120/207 (57.97%), Query Frame = 2
Query:   95 LGFIGAGKMAESIVKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDLQE-WTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGA 712
            +GFIGAGKM  ++++G  K+G++ P+ I  +       +D    +G++V +DN                         ++  ++ +KL++S+AAGV L   ++     +R +RVMPN  + V EAA+ ++ G  AT ED +   ++F +VG   +  E L DA+TGLSGSGPA+IF  IEA+ADG V  G+ R+ AL LA+QTVLGA
Sbjct:    6 IGFIGAGKMGSALMQGTIKAGIVTPENIGASDVYEPFLKDLQAKLGIRVSTDNAVIVRESDILILAVKPQTLSSVLSNLKNEITSEKLVISIAAGVPLSTYEDALLEGTRVVRVMPNIAATVSEAASGIAPGKNATPEDLKAALEIFSAVGTAVQVPESLMDAVTGLSGSGPAFIFPVIEAMADGAVLEGMDRKSALTLAAQTVLGA 212          
BLAST of FC930240 vs. ExPASy Swiss-Prot
Match: P5CR2_HUMAN (Pyrroline-5-carboxylate reductase 2 OS=Homo sapiens GN=PYCR2 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.182e-30
Identity = 81/211 (38.39%), Postives = 114/211 (54.03%), Query Frame = 2
Query:   95 LGFIGAGKMAESIVKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGA 712
            +GFIGAG++A ++ +G   +G+L   +I  ++   NL    A   +GV +   N                        +I   +  + ++VS AAGV +    K L  +    + IR M NTP  V E ATV + G  A  EDG+L+ +L  SVG     +E L DA+TGLSGSGPAY F+A++ALADGGV  GLPR LA+ L +Q +LGA
Sbjct:    3 VGFIGAGQLAYALARGFTAAGILSAHKIIASSPEMNLPTVSALRKMGVNLTRSNKETVKHSDVLFLAVKPHIIPFILDEIGADVQARHIVVSCAAGVTISSVEKKLMAFQPAPKVIRCMTNTPVVVQEGATVYATGTHALVEDGQLLEQLMSSVGFCTEVEEDLIDAVTGLSGSGPAYAFMALDALADGGVKMGLPRRLAIQLGAQALLGA 213          
BLAST of FC930240 vs. ExPASy Swiss-Prot
Match: P5CR1_PONAB (Pyrroline-5-carboxylate reductase 1, mitochondrial OS=Pongo abelii GN=PYCR1 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.862e-30
Identity = 84/211 (39.81%), Postives = 113/211 (53.55%), Query Frame = 2
Query:   95 LGFIGAGKMAESIVKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGA 712
            +GFIGAG++A ++ KG   +GVL   +I  ++   +L    A   +GVK+   N                        +I   +  + ++VS AAGV +    K L  +    R IR M NTP  V E ATV + G  A  EDG L+ +L  SVG     +E L DA+TGLSGSGPAY F A++ALADGGV  GLPR LA+ L +Q +LGA
Sbjct:    3 VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGA 213          
BLAST of FC930240 vs. ExPASy Swiss-Prot
Match: P5CR1_HUMAN (Pyrroline-5-carboxylate reductase 1, mitochondrial OS=Homo sapiens GN=PYCR1 PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 4.862e-30
Identity = 84/211 (39.81%), Postives = 113/211 (53.55%), Query Frame = 2
Query:   95 LGFIGAGKMAESIVKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGA 712
            +GFIGAG++A ++ KG   +GVL   +I  ++   +L    A   +GVK+   N                        +I   +  + ++VS AAGV +    K L  +    R IR M NTP  V E ATV + G  A  EDG L+ +L  SVG     +E L DA+TGLSGSGPAY F A++ALADGGV  GLPR LA+ L +Q +LGA
Sbjct:    3 VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGA 213          
BLAST of FC930240 vs. ExPASy Swiss-Prot
Match: P5CR2_PONAB (Pyrroline-5-carboxylate reductase 2 OS=Pongo abelii GN=PYCR2 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.349e-30
Identity = 81/211 (38.39%), Postives = 113/211 (53.55%), Query Frame = 2
Query:   95 LGFIGAGKMAESIVKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGA 712
            +GFIGAG++A ++ +G   +G+L   +I  ++   NL    A   +GV +   N                        +I   +    ++VS AAGV +    K L  +    + IR M NTP  V E ATV + G  A  EDG+L+ +L  SVG     +E L DA+TGLSGSGPAY F+A++ALADGGV  GLPR LA+ L +Q +LGA
Sbjct:    3 VGFIGAGQLAYALARGFTAAGILSAHKIIASSPEMNLPTVSALRKMGVNLTRSNKETVKHSDVLFLAVKPHIIPFILDEIGADVQAGHIVVSCAAGVTISSVEKKLMAFQPAPKVIRCMTNTPVVVQEGATVYATGTHALVEDGQLLEQLMSSVGFCTEVEEDLIDAVTGLSGSGPAYAFMALDALADGGVKMGLPRRLAIQLGAQALLGA 213          
BLAST of FC930240 vs. ExPASy Swiss-Prot
Match: P5CR2_MACFA (Pyrroline-5-carboxylate reductase 2 OS=Macaca fascicularis GN=PYCR2 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.414e-29
Identity = 79/211 (37.44%), Postives = 114/211 (54.03%), Query Frame = 2
Query:   95 LGFIGAGKMAESIVKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGA 712
            +G IGAG++A ++ +G   +G++   +I  ++   NL    A   +GV +   N                        +I   +  + ++VS AAGV +    K L  +    + IR M NTP  V E ATV ++G  A  EDG+L+ +L  SVG     +E L DA+TGLSGSGPAY F+A++ALADGGV  GLPR LA+ L +Q +LGA
Sbjct:    3 VGIIGAGQLAYALARGFTAAGIVSAHKIIASSPEMNLPTVSALRKMGVNLTRSNKETVKHSDVLFLAVKPHIIPFILDEIGADVQARHIVVSCAAGVTISSVEKKLMAFQPAPKVIRCMTNTPVVVREGATVYAMGTHALVEDGQLLEQLMSSVGFCTEVEEDLIDAVTGLSGSGPAYAFMALDALADGGVKMGLPRRLAVRLGAQALLGA 213          
The following BLAST results are available for this feature:
BLAST of FC930240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
P5CR_SOYBN1.648e-7868.35Pyrroline-5-carboxylate reductase OS=Glycine max P... [more]
P5CR_ACTCH4.794e-7871.03Pyrroline-5-carboxylate reductase OS=Actinidia chi... [more]
P5CR1_ARATH1.822e-7768.35Pyrroline-5-carboxylate reductase OS=Arabidopsis t... [more]
P5CR_PEA1.181e-7667.89Pyrroline-5-carboxylate reductase OS=Pisum sativum... [more]
P5CR_METAC3.367e-3137.68Pyrroline-5-carboxylate reductase OS=Methanosarcin... [more]
P5CR2_HUMAN2.182e-3038.39Pyrroline-5-carboxylate reductase 2 OS=Homo sapien... [more]
P5CR1_PONAB4.862e-3039.81Pyrroline-5-carboxylate reductase 1, mitochondrial... [more]
P5CR1_HUMAN4.862e-3039.81Pyrroline-5-carboxylate reductase 1, mitochondrial... [more]
P5CR2_PONAB6.349e-3038.39Pyrroline-5-carboxylate reductase 2 OS=Pongo abeli... [more]
P5CR2_MACFA1.414e-2937.44Pyrroline-5-carboxylate reductase 2 OS=Macaca fasc... [more]

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Properties
Property NameValue
Genbank descriptionC34005C08EF PostHarvC1 Citrus clementina cDNA clone C34005C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930240 ID=FC930240; Name=FC930240; organism=Citrus clementina; type=EST; length=714bp
GGTAAGTGGAGATATTAGGGGAAAAAAATTTGTTCAGAACAGCGACGACG
AGGCGATTATGGACGCATTTCCTATTCCTGCCGAAAGCTTCATTCTAGGC
TTCATTGGAGCGGGCAAAATGGCGGAGAGCATTGTCAAAGGAGTGGCGAA
ATCGGGCGTGTTGCCGCCCGATCGTATCTGCACCGCCGTCCACTCTAATC
TCAAACGCCGTGATGCTTTTGAGTCCATCGGCGTCAAAGTATTATCCGAC
AATAACGCCGTTGTTGAATACAGCGATGTGGTTGTTTTCTCTGTGAAACC
GCAAGTAGTTAAAGATGTGGCCATGCAGATAAGGCCGCTGTTATCACGGA
AGAAGCTTTTGGTTTCTGTTGCTGCAGGAGTGAAATTGAAAGACCTTCAG
GAATGGACTGGTCACAGCCGGTTTATTAGAGTTATGCCTAATACACCTTC
TGCTGTAGGTGAGGCTGCAACAGTTATGAGCTTGGGAGGAACTGCAACAG
AAGAGGATGGGGAACTAATCGGTAAATTATTCGGATCAGTTGGCAAGATA
TGGCGAGCGGATGAGAAATTGTTTGATGCAATCACGGGCCTGAGTGGCAG
CGGTCCAGCATATATATTTTTAGCAATTGAAGCTTTGGCTGATGGAGGTG
TGGCTGCAGGGCTACCGCGAGAACTTGCACTTGGTCTAGCTTCTCAGACA
GTATTAGGAGCAGC
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