FC930244

Overview
NameFC930244
Unique NameFC930244
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length624
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15124 contig Ccv1_Contig15124:1..624. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: GUB_PAEMA (Beta-glucanase OS=Paenibacillus macerans PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.667e-17
Identity = 45/102 (44.12%), Postives = 57/102 (55.88%), Query Frame = 1
Query:  319 ARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDG 624
            A +RST  + YG +   ++  K      +F  Y     G +  DEID EFLGKD T VQ NYYT G G  E++  LGFD S+GFH Y   W P  I+W +DG
Sbjct:   85 AEYRSTNIYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQ-WDEIDIEFLGKDTTKVQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG 185          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: GUB_PAEPO (Beta-glucanase OS=Paenibacillus polymyxa GN=gluB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.412e-16
Identity = 44/100 (44.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:  325 WRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDG 624
            +RST  + YG +   ++  K      +F  Y     G +  DEID EFLGKD T VQ NYYT G G  E+I +LGFD S  FH Y   W P  I+W +DG
Sbjct:   88 YRSTNNYGYGLYEVSMKPAKNTGIVSSFFTYTGPSHGTQ-WDEIDIEFLGKDTTKVQFNYYTNGVGGHEKIINLGFDASTSFHTYAFDWQPGYIKWYVDG 186          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: GUB_BACSU (Beta-glucanase OS=Bacillus subtilis GN=bglS PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.844e-16
Identity = 43/99 (43.43%), Postives = 55/99 (55.56%), Query Frame = 1
Query:  328 RSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDG 624
            RS   + YG +   ++  K      +F  Y    +G    DEID EFLGKD T VQ NYYT G GN E+I DLGFD +  +H Y   W P+ I+W +DG
Sbjct:   93 RSVQTYGYGLYEVRMKPAKNTGIVSSFFTYTGPTDGTP-WDEIDIEFLGKDTTKVQFNYYTNGAGNHEKIVDLGFDAANAYHTYAFDWQPNSIKWYVDG 190          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: GUB_BACAM (Beta-glucanase OS=Bacillus amyloliquefaciens GN=bglA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.844e-16
Identity = 43/99 (43.43%), Postives = 54/99 (54.55%), Query Frame = 1
Query:  328 RSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDG 624
            RS   + YG +   ++  K      +F  Y    EG    DEID EFLGKD T VQ NYYT G GN E+  DLGFD +  +H Y   W P+ I+W +DG
Sbjct:   90 RSVQTYGYGLYEVRMKPAKNTGIVSSFFTYTGPTEGTP-WDEIDIEFLGKDTTKVQFNYYTNGAGNHEKFADLGFDAANAYHTYAFDWQPNSIKWYVDG 187          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XYND_RUMFL (Xylanase/beta-glucanase OS=Ruminococcus flavefaciens GN=xynD PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.408e-16
Identity = 42/103 (40.78%), Postives = 57/103 (55.34%), Query Frame = 1
Query:  316 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDG 624
            G  +R+   + YG +   +Q  K +    +F  Y    + D   DEID E LGK+ T VQ NYYT G G  E+++DLGFD SE +H Y   W P+ I W +DG
Sbjct:  636 GGEFRTNNFYHYGYYECSMQAMKNDGVVSSFFTYTGPSD-DNPWDEIDIEILGKNTTQVQFNYYTNGQGKHEKLYDLGFDSSEAYHTYGFDWQPNYIAWYVDG 737          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: GUB_ORPSP (Beta-glucanase OS=Orpinomyces sp. (strain PC-2) GN=licA PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.107e-16
Identity = 48/120 (40.00%), Postives = 62/120 (51.67%), Query Frame = 1
Query:  277 DSNSITLTFDHRGGA----RWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDG 624
            ++  + LT D  G       +R+   + YG F   ++  K      +F  Y    +G K  DEID EFLG D T VQ NYYT G G+ E IH LGFD S+GFH Y   W  + I W +DG
Sbjct:   73 ENGKLKLTIDRDGSGYTCGEYRTKNYYGYGMFQVNMKPIKNPGVVSSFFTYTGPSDGTK-WDEIDIEFLGYDTTKVQFNYYTNGQGHHEHIHYLGFDASQGFHTYGFFWARNSITWYVDG 191          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: GUB_BACLI (Beta-glucanase OS=Bacillus licheniformis GN=bg1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.038e-15
Identity = 42/99 (42.42%), Postives = 55/99 (55.56%), Query Frame = 1
Query:  328 RSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDG 624
            RS   + YG +   ++  K      +F  Y    +G    DEID EFLGKD T VQ NYYT G GN E+I +LGFD +  +H Y   W P+ I+W +DG
Sbjct:   94 RSVQTYGYGLYEVNMKPAKNVGIVSSFFTYTGPTDGTP-WDEIDIEFLGKDTTKVQFNYYTNGVGNHEKIVNLGFDAANSYHTYAFDWQPNSIKWYVDG 191          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTH27_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.012e-14
Identity = 48/121 (39.67%), Postives = 71/121 (58.68%), Query Frame = 1
Query:  277 DSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLE-GDKSQDEIDFEFLG---KDKTIVQTNYYTTGT--GNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLID 621
            D  S+ LT D R G+ + S   +L+G FS+ I+ P   T+G+    Y+S+ +  +K+ DEIDFEFLG   + +  VQTN Y  G+    REE ++L FD +E FH+Y I W    I + +D
Sbjct:   49 DGKSVRLTLDERTGSGFVSNDYYLHGFFSASIKLPSDYTAGVVVAFYMSNGDMYEKNHDEIDFEFLGNIREKEWRVQTNIYGNGSTHSGREERYNLWFDPTEDFHQYSILWSDSHIIFFVD 169          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTH1_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.321e-14
Identity = 46/113 (40.71%), Postives = 62/113 (54.87%), Query Frame = 1
Query:  289 ITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLG--KDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLID 621
            + L+ DH  G+ + S   +  G F   I+ P  +TSG+    YL+S     + DE+DFEFLG  + K  VQTN +T G GNRE+   L FD S+ FH Y I W P  I   +D
Sbjct:   61 VQLSLDHSSGSGFESKNHYESGFFQIRIKVPPKDTSGVVTAFYLTSK--GNTHDEVDFEFLGNKEGKLAVQTNVFTNGKGNREQKLALWFDPSKDFHTYAILWNPYQIVLYVD 171          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTH26_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 26 OS=Arabidopsis thaliana GN=XTH26 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.726e-14
Identity = 43/119 (36.13%), Postives = 60/119 (50.42%), Query Frame = 1
Query:  277 DSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDG 624
            +  ++ L  D   G+  +S    L+G+   LI+   GN++G     YLSS     + DEIDFEFLG        + TN Y  G GNRE+     F+ + GFH Y I W P  + W +DG
Sbjct:   45 NGTNLRLVLDKSAGSAIKSKVAHLFGSVEMLIKLVPGNSAGTVAAYYLSST--GSTHDEIDFEFLGNATGQPYTIHTNLYAQGKGNREQQFRPWFNPTNGFHNYTIHWNPSEVVWFVDG 161          
The following BLAST results are available for this feature:
BLAST of FC930244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
GUB_PAEMA1.667e-1744.12Beta-glucanase OS=Paenibacillus macerans PE=1 SV=2[more]
GUB_PAEPO1.412e-1644.00Beta-glucanase OS=Paenibacillus polymyxa GN=gluB P... [more]
GUB_BACSU1.844e-1643.43Beta-glucanase OS=Bacillus subtilis GN=bglS PE=1 S... [more]
GUB_BACAM1.844e-1643.43Beta-glucanase OS=Bacillus amyloliquefaciens GN=bg... [more]
XYND_RUMFL2.408e-1640.78Xylanase/beta-glucanase OS=Ruminococcus flavefacie... [more]
GUB_ORPSP4.107e-1640.00Beta-glucanase OS=Orpinomyces sp. (strain PC-2) GN... [more]
GUB_BACLI2.038e-1542.42Beta-glucanase OS=Bacillus licheniformis GN=bg1 PE... [more]
XTH27_ARATH1.012e-1439.67Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH1_ARATH1.321e-1440.71Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH26_ARATH1.726e-1436.13Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionC34005C12EF PostHarvC1 Citrus clementina cDNA clone C34005C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930244 ID=FC930244; Name=FC930244; organism=Citrus clementina; type=EST; length=624bp
AGAAAAGGTTGTTCGTTATGATCAGATGGTGGATAGGCAAGGCCCGTGAA
TCGTTTTTAGAAATGCTTAGGAGCAGTGGGCTCACTGTAAAAAGTCTGGT
TTCTCCTTCAGTTGACTTCACTTTCTTTCTTCCGTAAATTGAAATCGGTA
AGCAGCAATTCTGTCGTGACCCTTGAACTTGAAATGGCGGATCCAGTTGT
CCAGAGTCTCCATCAAACTGAACCCATAAAAGAAATCGCCATAGATTACA
CCCCGGAAGCATGCACTCACTGCGCAGACTCCAATTCGATCACACTCACC
TTCGATCACCGCGGCGGAGCCAGGTGGCGCTCCACCACTCGCTTCCTCTA
CGGCACCTTCAGCTCCCTGATCCAGTGCCCCAAAGGCAACACTAGTGGCC
TCAACTTCAACATCTACCTTTCTTCTCTAGAAGGCGACAAATCCCAAGAC
GAAATCGACTTTGAATTCCTTGGCAAGGACAAGACTATCGTTCAAACCAA
TTATTACACTACAGGAACCGGGAATAGAGAGGAGATTCATGATCTGGGGT
TCGATTGTTCTGAAGGATTTCATGAGTACGTGATCAAGTGGGGTCCAGAT
TTGATCCAGTGGTTGATTGATGGG
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