FC930245

Overview
NameFC930245
Unique NameFC930245
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig675 contig Ccv1_Contig675:14..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930245 vs. ExPASy Swiss-Prot
Match: SODF_SOYBN (Superoxide dismutase [Fe], chloroplastic OS=Glycine max GN=SODB PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.796e-48
Identity = 88/143 (61.54%), Postives = 102/143 (71.33%), Query Frame = 3
Query:  231 KTGGRISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKA 659
            K G +++AKF+LKPPPYPLN LEP MS+ TLEFHWGKHH+ YV+NL KQ+VGTEL DGKSLE++++ SYNKGD+LPAFNNAAQ WNHDFFW                 LIERDFGS             TQFGSGWAWL Y+A
Sbjct:   18 KEGPKVNAKFELKPPPYPLNGLEPVMSQQTLEFHWGKHHKTYVENLKKQVVGTEL-DGKSLEEIIVTSYNKGDILPAFNNAAQVWNHDFFWECMKPGGGGKPSGELLELIERDFGSFVKFLDEFKAAAATQFGSGWAWLAYRA 159          
BLAST of FC930245 vs. ExPASy Swiss-Prot
Match: SODF_NICPL (Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.450e-44
Identity = 84/134 (62.69%), Postives = 93/134 (69.40%), Query Frame = 3
Query:  255 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYK 656
            KF+L+PPPYP++ALEPHMS  T EFHWGKHHRAYVDNLNKQI GTEL DGK+LED+++ +YNKG  LPAFNNAAQAWNH FFW                 LI RDFGS             TQFGSGWAWL YK
Sbjct:    1 KFELQPPPYPMDALEPHMSSRTFEFHWGKHHRAYVDNLNKQIDGTEL-DGKTLEDIILVTYNKGAPLPAFNNAAQAWNHQFFWESMKPNGGGEPSGELLELINRDFGSYDAFVKEFKAAAATQFGSGWAWLAYK 133          
BLAST of FC930245 vs. ExPASy Swiss-Prot
Match: SODF_ARATH (Superoxide dismutase [Fe], chloroplastic OS=Arabidopsis thaliana GN=SODB PE=1 SV=4)

HSP 1 Score: 170.629 bits (431), Expect = 6.671e-42
Identity = 79/136 (58.09%), Postives = 94/136 (69.12%), Query Frame = 3
Query:  246 ISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVY 653
            ++A + LKPPP+ L+ALEPHMSK TLEFHWGKHHRAYVDNL KQ++GTEL +GK LE ++ ++YN GDLLPAFNNAAQAWNH+FFW                 L+ERDF S             TQFG+GWAWL Y
Sbjct:    7 VTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTEL-EGKPLEHIIHSTYNNGDLLPAFNNAAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAY 141          
BLAST of FC930245 vs. ExPASy Swiss-Prot
Match: SODF_ANASP (Superoxide dismutase [Fe] OS=Anabaena sp. (strain PCC 7120) GN=sodB PE=3 SV=3)

HSP 1 Score: 117.087 bits (292), Expect = 8.753e-26
Identity = 61/132 (46.21%), Postives = 73/132 (55.30%), Query Frame = 3
Query:  258 FDLKPPPYPLNALEPH-MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 650
            F  +P PY  NALE + M  +T E+H+GKHH+AYVDNLNK   GTEL D KSLE+V+  ++        FNNAAQ WNH FFW                  I +DFGS             TQFGSGWAWL+
Sbjct:    3 FVQEPLPYDFNALEQYGMKGETFEYHYGKHHKAYVDNLNKLTDGTELAD-KSLEEVIQIAFKDASKAGIFNNAAQVWNHTFFWNSLKPAGGGAPTGEFAAKINQDFGSFDKLKEEFSNAAATQFGSGWAWLI 133          
BLAST of FC930245 vs. ExPASy Swiss-Prot
Match: SODF_SYNY3 (Superoxide dismutase [Fe] OS=Synechocystis sp. (strain PCC 6803) GN=sodB PE=1 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 2.816e-24
Identity = 58/125 (46.40%), Postives = 66/125 (52.80%), Query Frame = 3
Query:  276 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 650
            PY   ALEP +SK TLEFH  KHH AYV+N N  + GT+L D +S+EDV+ A          FNNAAQAWNH F+W                  I  DFGS             TQFGSGWAWLV
Sbjct:    9 PYDYTALEPCISKSTLEFHHDKHHAAYVNNFNNAVAGTDL-DNQSIEDVIKAVAGDASKAGIFNNAAQAWNHSFYWNCMKPGGGGQPSGALADKINADFGSFDAFVEAFKQAGATQFGSGWAWLV 132          
BLAST of FC930245 vs. ExPASy Swiss-Prot
Match: SODF_LEGPH (Superoxide dismutase [Fe] OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=sodB PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.273e-24
Identity = 58/131 (44.27%), Postives = 73/131 (55.73%), Query Frame = 3
Query:  258 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 650
            F L   PY L+AL PH+SK+TLE+H+GKHH  YV NLNK I GTE  +  +LE++++ +  KG +   FNNAAQ WNH F+W                  I + FGS             T FGSGWAWLV
Sbjct:    3 FTLPQLPYALDALAPHVSKETLEYHYGKHHNTYVTNLNKLIPGTEF-ESMTLEEIIMKA--KGGI---FNNAAQVWNHTFYWHSMSPNGGGEPKGRLAEAINKSFGSFAAFKEQFSQTAATTFGSGWAWLV 127          
BLAST of FC930245 vs. ExPASy Swiss-Prot
Match: SODF_PLEBO (Superoxide dismutase [Fe] OS=Plectonema boryanum GN=sodB PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.070e-23
Identity = 57/132 (43.18%), Postives = 71/132 (53.79%), Query Frame = 3
Query:  258 FDLKPPPYPLNALEPH-MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 650
            F   P P+P +ALEP+ M  +T ++H+GKHH AYV NLNK + GT + +  SLEDV+  S+     +  FNNAAQ WNH FFW                  I+  FGS             TQFGSGWAWLV
Sbjct:    3 FTQPPLPFPKDALEPYGMKAETFDYHYGKHHAAYVTNLNKLVEGTPM-ESLSLEDVIKQSFGDSSKVGVFNNAAQVWNHTFFWNCLKAGGGGAPTGELAAKIDAAFGSLDKFKEEFSNAAATQFGSGWAWLV 133          
BLAST of FC930245 vs. ExPASy Swiss-Prot
Match: SODF_PSEAE (Superoxide dismutase [Fe] OS=Pseudomonas aeruginosa GN=sodB PE=3 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 2.384e-23
Identity = 61/134 (45.52%), Postives = 71/134 (52.99%), Query Frame = 3
Query:  258 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKA 659
            F+L P PY  NALEPH+S +TLE+H  KHH  YV NLN  I GTE  +GKSLE++V +S   G +   FNNAAQ WNH F+W                  I   FGS               FGSGW WLV KA
Sbjct:    3 FELPPLPYEKNALEPHISAETLEYHHDKHHNTYVVNLNNLIPGTEF-EGKSLEEIVKSS--SGGI---FNNAAQVWNHTFYWNCLSPNGGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLVKKA 130          
BLAST of FC930245 vs. ExPASy Swiss-Prot
Match: SODF_COXBU (Superoxide dismutase [Fe] OS=Coxiella burnetii GN=sodB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.936e-23
Identity = 58/131 (44.27%), Postives = 73/131 (55.73%), Query Frame = 3
Query:  258 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 650
            F+L   PY LNALEPH+S++TLE+H GKHHRAYV+ LNK I GT   + + LE+++  S   G +   FNNAAQ WNH F+W                  I++ FGS               FGSGWAWLV
Sbjct:    3 FELPDLPYKLNALEPHISQETLEYHHGKHHRAYVNKLNKLIEGTPF-EKEPLEEIIRKS--DGGI---FNNAAQHWNHTFYWHCMSPDGGGDPSGELASAIDKTFGSLEKFKALFTDSANNHFGSGWAWLV 127          
BLAST of FC930245 vs. ExPASy Swiss-Prot
Match: SODF_PSEPU (Superoxide dismutase [Fe] OS=Pseudomonas putida GN=sodB PE=1 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 9.058e-23
Identity = 59/134 (44.03%), Postives = 71/134 (52.99%), Query Frame = 3
Query:  258 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKA 659
            F+L P PY  +AL+PH+SK+TLEFH  KHH  YV NLN  + GTE  +GK+LE++V  S   G +   FNNAAQ WNH F+W                  I   FGS               FGSGW WLV KA
Sbjct:    3 FELPPLPYAHDALQPHISKETLEFHHDKHHNTYVVNLNNLVPGTEF-EGKTLEEIVKTS--SGGI---FNNAAQVWNHTFYWNCLAPNAGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLVKKA 130          
The following BLAST results are available for this feature:
BLAST of FC930245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
SODF_SOYBN2.796e-4861.54Superoxide dismutase [Fe], chloroplastic OS=Glycin... [more]
SODF_NICPL2.450e-4462.69Superoxide dismutase [Fe], chloroplastic (Fragment... [more]
SODF_ARATH6.671e-4258.09Superoxide dismutase [Fe], chloroplastic OS=Arabid... [more]
SODF_ANASP8.753e-2646.21Superoxide dismutase [Fe] OS=Anabaena sp. (strain ... [more]
SODF_SYNY32.816e-2446.40Superoxide dismutase [Fe] OS=Synechocystis sp. (st... [more]
SODF_LEGPH6.273e-2444.27Superoxide dismutase [Fe] OS=Legionella pneumophil... [more]
SODF_PLEBO1.070e-2343.18Superoxide dismutase [Fe] OS=Plectonema boryanum G... [more]
SODF_PSEAE2.384e-2345.52Superoxide dismutase [Fe] OS=Pseudomonas aeruginos... [more]
SODF_COXBU6.936e-2344.27Superoxide dismutase [Fe] OS=Coxiella burnetii GN=... [more]
SODF_PSEPU9.058e-2344.03Superoxide dismutase [Fe] OS=Pseudomonas putida GN... [more]

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Properties
Property NameValue
Genbank descriptionC34005D01EF PostHarvC1 Citrus clementina cDNA clone C34005D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930245 ID=FC930245; Name=FC930245; organism=Citrus clementina; type=EST; length=680bp
GGCACTCACTTCGTAGTACCCCACACAAATCAAGAGTCAACCCAGTTCAC
ACACAGAGTTGTTCAGGCTTTGCTTTCATCTGCTATAACCAAAGCTGTAA
TATATAAGGCATGGCATCGGCGGCAGCAGCAGCTTCATCTGCTCCAACAA
TTTGGTTGACTGGCCAAGGACTTGGTGGAAGGAGTACGCGATTGCCTTTT
CATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTGGTGGCCGAATTTC
TGCGAAATTTGATTTGAAGCCTCCACCTTATCCACTGAATGCTCTGGAGC
CACATATGAGCAAGGACACCCTGGAATTCCACTGGGGAAAGCACCACAGA
GCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAACTGAGCTTGGTGA
TGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTACAACAAGGGTGACT
TGCTTCCAGCTTTCAATAATGCTGCACAGGCGTGGAACCATGACTTCTTC
TGGGAATCCATGAAACCGGGTGGTGGCGGAAAGCCGTCTGGTGAACTTCT
AGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAATTTCTTGAGGAAT
TCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTGGGCCTGGCTTGTA
TACAAAGCAATAATAGAGCTGATGTGGCTA
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