FC930247

Overview
NameFC930247
Unique NameFC930247
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14112 contig Ccv1_Contig14112:11..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930247 vs. ExPASy Swiss-Prot
Match: USF_AQUPY (Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.272e-17
Identity = 63/202 (31.19%), Postives = 98/202 (48.51%), Query Frame = 3
Query:  150 IQIQRDDTTFDAYVVG-KEDAPGIVVVQEWWGVDFEIKNHAVKISQL-NPGFKALIPDLYRGKVGLDTAEAQHLMSG-----LDWPGAVKDIHASVNWLKA---NGSKKVGVTGYCMGGALAIASSVLVPE-VDAVVSFYGVPPPELADPTQAKAPVQAHFGELDNFVGFSDVKTAQALEEKLKASGGPYEVHIYPGSAHAF 722
            ++ +++      Y+   K   PG++V+ EWWG++  + N      +    GF A  PD Y GK   +  +A  LM+      +D   A+    ASV++LK       KKVGVTG+C GG L++  +   P+ +DA V FYG+P     D    K P+     E D FV   +V     + +K+  +G   +V +Y G  HAF
Sbjct:    5 VEFEKNGVKVRGYIATPKWGGPGVIVIHEWWGLESPLSNIKEICDRFAQEGFVAFAPDFYEGKYADNPDDAGKLMTDMFENRMDKVDAI--FKASVDFLKECRYTSPKKVGVTGFCCGGTLSMYFAGKFPDLIDASVPFYGLPQITKIDAENIKVPIFFILAEKDEFVNNDEVID---IAKKVWKNGVDVKVKVYSGVTHAF 201          
BLAST of FC930247 vs. ExPASy Swiss-Prot
Match: YGHX_ECOLI (Putative uncharacterized protein yghX OS=Escherichia coli (strain K12) GN=yghX PE=5 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.555e-15
Identity = 57/175 (32.57%), Postives = 92/175 (52.57%), Query Frame = 3
Query:  210 PGIVVVQEWWGVDFEIKNHAVKISQLNPGFKALIPDLYRGKVGL--DTAEAQHLMSGLDWPGAVKDIHASVNWLKA--NGSKKVGVTGYCMGGALAIASSVLVPEVDAVVSFYGVPPPELADPTQAKAPVQAHFGELDNFVGFSDVKTAQALEEKLKASGGPYEVHIYPGSAHAF 722
            P +VVV E  G++  I++ A ++++   G+ AL PD      G   +  + + L   +D    + D  A++ +++     + KVG+TG+C GG ++ A++V  PE+   V FYG   P  AD  + +AP+  HF ELD  +     +   A E  LKA+   YE +IYPG  H F
Sbjct:   82 PAVVVVHENRGLNPYIEDVARRVAKA--GYIALAPDGLSSVGGYPGNDDKGRELQQQVDPTNLMNDFFAAIEFMQRYPQATGKVGITGFCYGGGVSNAAAVAYPELACAVPFYGRQAP-TADVAKIEAPLLLHFAELDTRIN----EGWPAYEAALKANNKVYEAYIYPGVNHGF 249          
BLAST of FC930247 vs. ExPASy Swiss-Prot
Match: DLHH_AQUAE (Putative carboxymethylenebutenolidase OS=Aquifex aeolicus GN=aq_1997 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.720e-14
Identity = 57/200 (28.50%), Postives = 96/200 (48.00%), Query Frame = 3
Query:  150 IQIQRDDTTFDAYVVGKEDA-PGIVVVQEWWGVDFEIKNHAVKISQL-NPGFKALIPDLYRGKVGLDTAEAQHLMSGL---DWPGAVKDIHASVNWLKA---NGSKKVGVTGYCMGGALAIASSVLVPE-VDAVVSFYGVPPPELADPTQAKAPVQAHFGELDNFVGFSDVKTAQALEEKLKASGGPYEVHIYPGSAHAF 722
            ++ +++      Y+   + A P ++V  EWWG++  + N      +L + GF A  PD Y+G+   +  +A  LM+ +         +   ASV ++K       KKVG+TG+C GG LA+  +   PE VDA + FYG+P     +    K P+     E D FV   +V     + + +  +G   +V ++ G  HAF
Sbjct:    5 VEFEKNGVKVRGYIATPKWAGPAVLVFHEWWGLESPLSNIKEICDKLADEGFVAFAPDFYKGQYADNPDDAGKLMTEMFEKRMDEVDRIFQASVEFVKECRYTYPKKVGITGFCCGGTLAMYFAAKFPEMVDASLPFYGLPQLTQINAENIKVPIFFILAEKDEFVNNDEVID---IAKTVWKNGVDVQVKVFSGVTHAF 201          
BLAST of FC930247 vs. ExPASy Swiss-Prot
Match: DLHH_METEA (Putative carboxymethylenebutenolidase OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=MexAM1_META1p1735 PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.436e-13
Identity = 67/258 (25.97%), Postives = 117/258 (45.35%), Query Frame = 3
Query:   30 RILSRSTPLLKPSLARTHFPAGYRFAVRSMA-------DSAASPFKKIQIQRDDTTFDAYVVGKEDA---PGIVVVQEWWGVDFEIKNHAVKISQLNPGFKALIPDLYRGKVGLDTAE-----AQHLMSGLDWPGAVKDIHASVNWLKANG---SKKVGVTGYCMGGALAIASSVLVPEVDAVVSFYG---------VPPPELADPTQAKAPVQAHFGELDNFVGFSDVKTAQALEEKLKASGGPYEVHIYPGSAHAF 722
            R L+  T L + ++  T    G+  AV+ +A       D+      +++I   D    AY     +    P I+VVQE +GV   IK+   ++++L  G+ AL P+LY  +  + T          ++S +     + D+ A+V + K  G   + ++G+TG+C GG +    +   P V A V++YG         +P   +      KAPV   +G  D  +    V T   ++E  +A+G   +  +YP + HAF
Sbjct:    9 RSLAAQTTLSRRTVIATSLATGFALAVQPVAAQTTIATDANGLIAGEVKIPMQDGVIPAYRAMPAEGGPFPTILVVQEIFGVHEHIKDVCRRLAKL--GYFALAPELYARQGDVSTLTNIQQIVSEVVSKVPDAQVMSDLDAAVAFAKGTGKADTARLGITGFCWGGRITWLYAAHNPAVKAGVAWYGRLVGDSSALMPKNPVDVAADLKAPVLGLYGGADQGI---PVATIDRMKEACRAAGKTCDFVVYPEAGHAF 261          
BLAST of FC930247 vs. ExPASy Swiss-Prot
Match: DLHH_ECO57 (Putative carboxymethylenebutenolidase OS=Escherichia coli O157:H7 GN=ysgA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 61/225 (27.11%), Postives = 105/225 (46.67%), Query Frame = 3
Query:  108 VRSMADSAASPFKKIQIQRDDTTFDAYVVGKEDAPG----IVVVQEWWGVDFEIKNHAVKISQLNPGFKALIPDLY-RGKVGLDTAEAQHLMSGL----DWPGAVKDIHASVNWLKANGSK--KVGVTGYCMGGALAIASSVLVPEVDAVVSFYG---------VPPPELADPTQAKAPVQAHFGELDNFVGFSDVKTAQALEEKLKASGGPYEVHIYPGSAHAF 722
            V++  D+  + F  I  Q D+    AY    + + G    ++VVQE +GV   I++   +++    G+ A+ P+LY R     D A+   L+SGL         + D+    +W   NG    ++ +TG+C GG +    +   P++ A V++YG          P   +   T   APV   +G LDN +    V+T   + + L+A+    E+ +YP + HAF
Sbjct:   21 VQTPDDAIVAGFTSIPSQGDN--MPAYHARPKQSDGPLPVVIVVQEIFGVHEHIRDICRRLAL--EGYLAIAPELYFREGDPNDFADIPTLLSGLVAKVPDSQVLADLDHVASWASRNGGDVHRLMITGFCWGGRITWLYAAHNPQLKAAVAWYGKLTGDKSLNSPKQPVDIATDLNAPVLGLYGGLDNSIPQESVET---MRQALRAANAKAEIIVYPDAGHAF 238          
The following BLAST results are available for this feature:
BLAST of FC930247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
USF_AQUPY1.272e-1731.19Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1[more]
YGHX_ECOLI1.555e-1532.57Putative uncharacterized protein yghX OS=Escherich... [more]
DLHH_AQUAE1.720e-1428.50Putative carboxymethylenebutenolidase OS=Aquifex a... [more]
DLHH_METEA9.436e-1325.97Putative carboxymethylenebutenolidase OS=Methyloba... [more]
DLHH_ECO573.035e-1127.11Putative carboxymethylenebutenolidase OS=Escherich... [more]
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Properties
Property NameValue
Genbank descriptionC34005D03EF PostHarvC1 Citrus clementina cDNA clone C34005D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930247 ID=FC930247; Name=FC930247; organism=Citrus clementina; type=EST; length=723bp
GGGAGTAGATAATGCTAGCAGCTGCTTCGAGAATCTTGAGCAGATCAACT
CCGCTTCTTAAGCCCTCTCTCGCAAGGACTCACTTTCCCGCCGGTTATCG
CTTTGCAGTCAGATCAATGGCAGACTCTGCAGCTTCGCCCTTCAAGAAAA
TCCAGATTCAGAGAGATGATACTACTTTTGATGCATATGTGGTTGGCAAA
GAAGACGCCCCTGGGATTGTTGTAGTTCAGGAGTGGTGGGGTGTTGATTT
TGAGATCAAGAACCATGCTGTCAAAATCTCCCAACTAAACCCTGGATTCA
AGGCACTTATACCAGATTTATATCGGGGAAAGGTTGGTTTGGATACTGCT
GAAGCACAGCACTTGATGAGTGGTCTTGATTGGCCAGGTGCTGTCAAGGA
TATCCACGCTTCAGTTAATTGGCTTAAGGCAAATGGTTCCAAGAAGGTTG
GCGTGACTGGATATTGCATGGGAGGTGCTCTCGCTATTGCAAGTTCTGTC
TTAGTTCCTGAGGTTGATGCTGTTGTTTCATTTTATGGGGTTCCCCCACC
TGAGCTCGCCGATCCTACCCAGGCTAAGGCACCTGTTCAAGCTCATTTTG
GGGAGCTTGACAATTTTGTTGGCTTTTCAGATGTGAAAACTGCCCAAGCA
TTGGAGGAAAAGCTGAAAGCATCTGGTGGTCCATATGAGGTACATATTTA
TCCTGGCAGTGCACATGCTTTCA
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