FC930249

Overview
NameFC930249
Unique NameFC930249
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC930249 vs. ExPASy Swiss-Prot
Match: CPL2_ARATH (RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana GN=CPL2 PE=1 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.177e-44
Identity = 120/270 (44.44%), Postives = 154/270 (57.04%), Query Frame = 3 
Query:    3 DANFAPNGSTNAP-MSEGLNGLEVERRLNQSDEKCVVDSGLPSMKNSSDLKSETSLLPVAVASNATVPAT---VVPSQKPGLLGAPIRRDNSS---------MKHGFDLRNQNSAQPPL----------PKLHGQGGWIVEEEVNRV-------------LPNNRPVSIATGLPSHASQAKGEEAIMAHDLHKQNLPPASQPPEIGVSQNHVSSNSREFQTEGGKTNLLPSYLSIGVLQEIGKRCSSKVEFRSVVSTSKDLQFSVEVLFT 704
            D  FA NG+ NAP ++EG+ G EVERRLNQ+       S LP+  N+   K ET    +AV  N    AT   ++PS KP LLGAP RRD  +         M+ G D+RNQN  QPP+            +H  GGW+V++E NR               P+  P S   G  +H S  + EE  M  DL +QN  P+ Q  E G+SQNH+ SN RE  T+GGK+N   S+L +  LQEIG+RC SKVEFR+V+ST+K+LQFSVEVLFT
Sbjct:  432 DPGFASNGNINAPPINEGMCGGEVERRLNQA--AAADHSTLPATSNAEQ-KPETPKPQIAVIPNNASTATAAALLPSHKPSLLGAP-RRDGFTFSDGGRPLMMRPGVDIRNQNFNQPPILAKIPMQPPSSSMHSPGGWLVDDE-NRPSFPGRPSGLYPSQFPHGTPGSAPVGPFAHPSHLRSEEVAMDDDLKRQN--PSRQTTEGGISQNHLVSNGREHHTDGGKSNGGQSHLFVSALQEIGRRCGSKVEFRTVISTNKELQFSVEVLFT 694
The following BLAST results are available for this feature:
BLAST of FC930249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CPL2_ARATH1.177e-4444.44RNA polymerase II C-terminal domain phosphatase-li... [more]
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Properties
Property NameValue
Genbank descriptionC34005D05EF PostHarvC1 Citrus clementina cDNA clone C34005D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930249 ID=FC930249; Name=FC930249; organism=Citrus clementina; type=EST; length=704bp
AGGATGCCAATTTTGCACCAAATGGCAGCACTAATGCTCCAATGAGTGAA
GGACTGAACGGACTTGAAGTGGAAAGGAGACTGAACCAATCTGATGAGAA
ATGTGTTGTGGACTCAGGTTTGCCTTCTATGAAAAATAGCTCTGATTTGA
AATCTGAAACATCTCTGCTTCCTGTTGCTGTTGCTTCAAATGCCACTGTC
CCAGCAACAGTTGTGCCTTCTCAGAAACCTGGTTTGCTTGGAGCTCCCAT
TAGGCGAGACAACAGCTCTATGAAGCATGGTTTTGATTTAAGGAATCAAA
ACTCAGCTCAACCCCCTCTACCTAAATTACATGGGCAGGGAGGCTGGATA
GTTGAAGAAGAAGTTAACCGAGTGCTTCCAAATAATCGCCCTGTTTCCAT
TGCCACTGGTTTACCCTCACATGCCTCCCAAGCGAAGGGCGAAGAGGCAA
TTATGGCACATGATTTGCATAAACAGAATCTTCCACCAGCAAGTCAGCCT
CCAGAGATTGGGGTATCCCAGAATCACGTGTCATCAAATAGCAGAGAATT
CCAGACTGAAGGTGGAAAGACGAACTTGCTACCATCCTATCTGTCTATTG
GTGTGCTACAGGAAATTGGAAAGAGGTGCAGCTCCAAGGTCGAGTTCAGG
TCTGTTGTAAGCACGAGTAAGGATTTACAATTTTCTGTTGAGGTTTTGTT
TACT
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