FC930250

Overview
NameFC930250
Unique NameFC930250
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930250_ssr51 microsatellite FC930250_ssr51:51..65. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15125 contig Ccv1_Contig15125:1..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP1_ORYSJ (Serine/threonine-protein phosphatase PP1 OS=Oryza sativa subsp. japonica GN=Os03g0268000 PE=2 SV=2)

HSP 1 Score: 306.22 bits (783), Expect = 1.026e-82
Identity = 144/165 (87.27%), Postives = 155/165 (93.94%), Query Frame = 2
Query:  179 MDPAVLDGVIRRLLEVR-GKPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDER 670
            MD  +LD +IRRLLEVR  +PGKQVQLSESEIRQLC VS+ IFL QPNLLE+EAPIKICGDIHGQYSDLLRLFEYGG PP +NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS+NR+YGFYDECKRRFNVRLWK+FTDCFNCLPVAALID++
Sbjct:   15 MDAVLLDDIIRRLLEVRTARPGKQVQLSESEIRQLCTVSREIFLSQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKVFTDCFNCLPVAALIDDK 179          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP1_MAIZE (Serine/threonine-protein phosphatase PP1 OS=Zea mays GN=PP1 PE=2 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 9.606e-81
Identity = 139/165 (84.24%), Postives = 155/165 (93.94%), Query Frame = 2
Query:  179 MDPAVLDGVIRRLLEVRG-KPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDER 670
            MDPA+LD VIRRLLEV+  KPGK  QLSESEI+QLC  +K IFL+QPNLLE+EAPIKICGD+HGQYSDLLRLF+YGG PP++NYLFLGDYVDRGKQSLETICLLLAYK+KYPENFFLLRGNHECASVNR+YGFYDECKRRF+V+LWK FTDCFNCLPV+ALIDE+
Sbjct:    1 MDPALLDDVIRRLLEVKNLKPGKNAQLSESEIKQLCAAAKEIFLQQPNLLELEAPIKICGDVHGQYSDLLRLFDYGGYPPQANYLFLGDYVDRGKQSLETICLLLAYKVKYPENFFLLRGNHECASVNRIYGFYDECKRRFSVKLWKTFTDCFNCLPVSALIDEK 165          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP11_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Arabidopsis thaliana GN=TOPP1 PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 2.140e-80
Identity = 143/167 (85.63%), Postives = 152/167 (91.02%), Query Frame = 2
Query:  179 MDPAVLDGVIRRLLEVRGK---PGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDER 670
            M+PAVLD +IRRL+E R      GKQV LSE EIRQLC VSK IFL+QPNLLE+EAPIKICGDIHGQYSDLLRLFEYGG PP +NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHE AS+NR+YGFYDECKRRFNVRLWKIFTDCFNCLPVAALID+R
Sbjct:   15 MEPAVLDDIIRRLVEFRNTRPGSGKQVHLSEGEIRQLCAVSKEIFLQQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHESASINRIYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDDR 181          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP14_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 4 OS=Arabidopsis thaliana GN=TOPP4 PE=2 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 4.767e-80
Identity = 138/165 (83.64%), Postives = 154/165 (93.33%), Query Frame = 2
Query:  179 MDPAVLDGVIRRLLEVR-GKPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDER 670
            +D AVLD +IRRL EVR  +PGKQVQLSE+EI+QLC  ++ IFL+QPNLLE+EAPIKICGDIHGQYSDLLRLFEYGG PP +NYLFLGDYVDRGKQSLETICLLLAYKIKYP NFFLLRGNHECAS+NR+YGFYDECKRRFNVR+WK+FTDCFNCLPVAALID++
Sbjct:   14 IDSAVLDDIIRRLTEVRLARPGKQVQLSEAEIKQLCTTARDIFLQQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGFPPSANYLFLGDYVDRGKQSLETICLLLAYKIKYPGNFFLLRGNHECASINRIYGFYDECKRRFNVRVWKVFTDCFNCLPVAALIDDK 178          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP17_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 7 OS=Arabidopsis thaliana GN=TOPP7 PE=2 SV=3)

HSP 1 Score: 295.049 bits (754), Expect = 2.366e-79
Identity = 137/164 (83.54%), Postives = 151/164 (92.07%), Query Frame = 2
Query:  179 MDPAVLDGVIRRLLEVRGKPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDER 670
            MDP  L+ VI RLLE R KPGK VQLSE+EI+QLC VS+ IFLRQPNLLE+EAP+KICGDIHGQY DLLRLFE+GG PP SNYLFLGDYVDRGKQSLETICLLLAYKIK+PENFFLLRGNHE AS+NR+YGFYDECKRRF+V++W+IFTDCFNCLPVAALIDER
Sbjct:    1 MDPGTLNSVINRLLEAREKPGKIVQLSETEIKQLCFVSRDIFLRQPNLLELEAPVKICGDIHGQYPDLLRLFEHGGYPPNSNYLFLGDYVDRGKQSLETICLLLAYKIKFPENFFLLRGNHESASINRIYGFYDECKRRFSVKIWRIFTDCFNCLPVAALIDER 164          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP1_BRAOL (Serine/threonine-protein phosphatase PP1 OS=Brassica oleracea GN=PP1 PE=2 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 3.090e-79
Identity = 141/169 (83.43%), Postives = 151/169 (89.35%), Query Frame = 2
Query:  167 RVQEMDPAVLDGVIRRLLEVRGK---PGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALID 664
            + + M+PAVLD +IRRL+E R      GKQV LSE EIRQLC VSK IFL+QP LLE+EAPIKICGDIHGQYSDLLRLFEYGG PP +NYLFLGDYVDRGKQSLETIC LLAYKIKYPENFFLLRGNHECAS+NR+YGFYDECKRRFNVRLWKIFTDCFNCLPVAALID
Sbjct:   13 QTRAMEPAVLDDIIRRLVEFRNTRPGSGKQVHLSEGEIRQLCAVSKDIFLQQPILLELEAPIKICGDIHGQYSDLLRLFEYGGFPPDANYLFLGDYVDRGKQSLETICFLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKIFTDCFNCLPVAALID 181          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP12_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 2 OS=Arabidopsis thaliana GN=TOPP2 PE=2 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 5.271e-79
Identity = 139/166 (83.73%), Postives = 154/166 (92.77%), Query Frame = 2
Query:  179 MDPAVLDGVIRRLLEVRG-KPG-KQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDER 670
            MDPA LD +IRRLL+ R  KPG KQ  L+ESEIRQLC+VS+ IFL+QPNLLE+EAPIKICGDIHGQYSDLLRLFEYGG PP +NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS+NR+YGFYDECKRRF+VRLWK+FTD FNCLPVAA+ID++
Sbjct:    9 MDPAALDDIIRRLLDYRNPKPGTKQAMLNESEIRQLCIVSREIFLQQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGFPPTANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFSVRLWKVFTDSFNCLPVAAVIDDK 174          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP12_TOBAC (Serine/threonine-protein phosphatase PP1 isozyme 2 OS=Nicotiana tabacum GN=NPP2 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.696e-77
Identity = 137/167 (82.04%), Postives = 149/167 (89.22%), Query Frame = 2
Query:  173 QEMDPAVLDGVIRRLLEVRG-KPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDER 670
            Q ++PAVLD +I RLLE R  +  +QVQLSE+EIR LC  SK IFL QPNLLE+EAPIKICGDIHGQY DLLRLFEYGG PP +NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS+NR+YGFYDECKRRFNVRLWK  TDCFNCLPVAALID++
Sbjct:    6 QGIEPAVLDDIINRLLEFRNARTVRQVQLSEAEIRSLCTASKEIFLHQPNLLELEAPIKICGDIHGQYGDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTNTDCFNCLPVAALIDDK 172          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP11_ACECL (Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.696e-77
Identity = 133/165 (80.61%), Postives = 150/165 (90.91%), Query Frame = 2
Query:  179 MDPAVLDGVIRRLLEVRG-KPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDER 670
            MD + +D VI RLLEVR  +PGKQVQL+ESEIR LC+ SK I   QPNLLE+EAPIKICGDIHGQY+DLLRLFEYGG PP +NYLFLGDYVDRGKQSLETICLLLA+KIKYPENFF+LRGNHECAS+NR+YGFYDECKRR+N+RLWK FTDCFNCLPVAA++DE+
Sbjct:    1 MDESTVDDVIERLLEVRNNRPGKQVQLTESEIRLLCLTSKEILSEQPNLLELEAPIKICGDIHGQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAFKIKYPENFFILRGNHECASINRIYGFYDECKRRYNIRLWKTFTDCFNCLPVAAIVDEK 165          
BLAST of FC930250 vs. ExPASy Swiss-Prot
Match: PP1G_HUMAN (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit OS=Homo sapiens GN=PPP1CC PE=1 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.215e-77
Identity = 132/170 (77.65%), Postives = 151/170 (88.82%), Query Frame = 2
Query:  176 EMDPAVLDGVIRRLLEVRG-KPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDERYSAC 682
            ++D   +D +I+RLLEVRG KPGK VQL E+EIR LC+ S+ IFL QP LLE+EAP+KICGDIHGQY DLLRLFEYGG PP SNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS+NR+YGFYDECKRR+N++LWK FTDCFNCLP+AA++DE+   C
Sbjct:    3 DLDKLNIDSIIQRLLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCC 172          
The following BLAST results are available for this feature:
BLAST of FC930250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PP1_ORYSJ1.026e-8287.27Serine/threonine-protein phosphatase PP1 OS=Oryza ... [more]
PP1_MAIZE9.606e-8184.24Serine/threonine-protein phosphatase PP1 OS=Zea ma... [more]
PP11_ARATH2.140e-8085.63Serine/threonine-protein phosphatase PP1 isozyme 1... [more]
PP14_ARATH4.767e-8083.64Serine/threonine-protein phosphatase PP1 isozyme 4... [more]
PP17_ARATH2.366e-7983.54Serine/threonine-protein phosphatase PP1 isozyme 7... [more]
PP1_BRAOL3.090e-7983.43Serine/threonine-protein phosphatase PP1 OS=Brassi... [more]
PP12_ARATH5.271e-7983.73Serine/threonine-protein phosphatase PP1 isozyme 2... [more]
PP12_TOBAC1.696e-7782.04Serine/threonine-protein phosphatase PP1 isozyme 2... [more]
PP11_ACECL1.696e-7780.61Serine/threonine-protein phosphatase PP1 isozyme 1... [more]
PP1G_HUMAN2.215e-7777.65Serine/threonine-protein phosphatase PP1-gamma cat... [more]

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Properties
Property NameValue
Genbank descriptionC34005D06EF PostHarvC1 Citrus clementina cDNA clone C34005D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930250 ID=FC930250; Name=FC930250; organism=Citrus clementina; type=EST; length=682bp
AATTCTAACTCACCGAGGATGCTCCGTTCTTCTTTATTCTTCTTTACCTT
TTCTTCTTCTTCTTCTTTACTTTGTTCTCTCCTTCTTTTAAGATATTCTT
GAGATTGAATTCGGAGTGGAAACACAAAAAAGAAGAGGGAAGGGAGAAGA
GAAGAAGAGTGGTGTGAGAGTTCAAGAAATGGATCCTGCTGTTCTTGACG
GTGTGATCAGGAGGCTTCTTGAAGTCAGAGGCAAACCAGGGAAGCAAGTG
CAGTTATCTGAGTCTGAGATTAGGCAGCTTTGTGTTGTCTCTAAGGGTAT
TTTCTTGAGGCAGCCCAACCTTTTAGAGATTGAAGCTCCTATCAAGATCT
GTGGAGACATTCATGGTCAGTATTCTGATCTTCTGAGGCTTTTTGAATAT
GGTGGGTTACCTCCTCGTTCCAATTACTTATTCTTGGGGGATTATGTAGA
TCGTGGAAAACAAAGTCTGGAAACAATATGCCTTCTCCTTGCATATAAAA
TAAAATATCCGGAGAACTTTTTCCTTCTTAGGGGAAACCATGAATGTGCT
TCGGTAAACCGTGTCTATGGATTTTATGATGAGTGTAAACGGAGATTCAA
TGTCAGACTTTGGAAAATATTCACTGATTGTTTCAACTGCCTGCCCGTGG
CAGCTCTTATTGATGAAAGATACTCTGCATGC
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