FC930251

Overview
NameFC930251
Unique NameFC930251
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length655
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14244 contig Ccv1_Contig14244:37..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930251 vs. ExPASy Swiss-Prot
Match: P2_ARATH (Probable NADP-dependent oxidoreductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2)

HSP 1 Score: 279.641 bits (714), Expect = 9.605e-75
Identity = 136/206 (66.02%), Postives = 166/206 (80.58%), Query Frame = 1
Query:   55 SNKQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSS-----FTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGL-FKIHHTDVPLSYYTGILGMPGMTA*AGFYEICAPKKGEYIYVSATSGAVGQIVGQFAKMMGSYVVGSAGSRIKVELLKKQLGFDDAFN 654
            +NKQVI K++V GFPKE+D     +++ L+V EGS ++LVKNLYLSCDPYMR+RM     PD SS     + PG PI G+GV++V++SGHP++KKGDL+WG  GWEEYS+I     + FKI HTDVPLSYYTG+LGMPGMTA AGFYE+C+PKKGE +YVSA SGAVGQ+VGQFAKMMG YVVGSAGS+ KV+LLK + GFDDAFN
Sbjct:    3 TNKQVIFKDHVSGFPKESDFNFTTTTVELRVPEGSKSVLVKNLYLSCDPYMRSRMG---KPDPSSALAQAYAPGKPIYGYGVSRVIESGHPDYKKGDLLWGIVGWEEYSVITPMAHMHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKKGETVYVSAASGAVGQLVGQFAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFN 205          
BLAST of FC930251 vs. ExPASy Swiss-Prot
Match: P1_ARATH (Probable NADP-dependent oxidoreductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 6.226e-74
Identity = 132/205 (64.39%), Postives = 165/205 (80.49%), Query Frame = 1
Query:   55 SNKQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSS----FTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKN-PQGLFKIHHTDVPLSYYTGILGMPGMTA*AGFYEICAPKKGEYIYVSATSGAVGQIVGQFAKMMGSYVVGSAGSRIKVELLKKQLGFDDAFN 654
            +NKQVILK+YV GFP E+D     +++ L+V EG+N++LVKNLYLSCDPYMR RM    DP  ++    +TPG PI+G+GV+++++SGHP++KKGDL+WG   WEEYS+I       FKI HTDVPLSYYTG+LGMPGMTA AGFYE+C+PK+GE +YVSA SGAVGQ+VGQ AKMMG YVVGSAGS+ KV+LLK + GFDDAFN
Sbjct:    4 TNKQVILKDYVSGFPTESDFDFTTTTVELRVPEGTNSVLVKNLYLSCDPYMRIRMG-KPDPSTAALAQAYTPGQPIQGYGVSRIIESGHPDYKKGDLLWGIVAWEEYSVITPMTHAHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFN 207          
BLAST of FC930251 vs. ExPASy Swiss-Prot
Match: YFMJ_BACSU (Putative NADP-dependent oxidoreductase yfmJ OS=Bacillus subtilis GN=yfmJ PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.477e-30
Identity = 81/200 (40.50%), Postives = 110/200 (55.00%), Query Frame = 1
Query:   55 SNKQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKIHHTDVPLSYYTGILGMPGMTA*AGFYEICAPKKGEYIYVSATSGAVGQIVGQFAKMMGSYVVGSAGSRIKVELLKKQLGFDDAFN 654
            S +Q+ L    +G P   D   +   +    E     +LVK LY+S DPYMR RM   +      F     + G  +A+VV  G+   KKGD+V G   W+E+S +     L KI  +  P S Y GILGM G+TA  G  +I  PK+GE + VS  +GAVG  VGQ AK+ G+ VVG AGS  K++ LK++L FD+A N
Sbjct:    4 SQQQIQLARRPQGIPVHEDFRFETIPVP---EPKQGEVLVKTLYVSVDPYMRGRMQDTKSY-VEPFALDKALSGGVIAEVVSDGN-HLKKGDIVIGNLSWQEFSAVSE-SALRKIDTSLAPASAYLGILGMTGLTAYFGLLDIGRPKEGETVVVSGAAGAVGSTVGQIAKIKGARVVGIAGSDEKIDYLKQELQFDEAIN 197          
BLAST of FC930251 vs. ExPASy Swiss-Prot
Match: YKM8_SCHPO (Zinc-type alcohol dehydrogenase-like protein PB24D3.08c OS=Schizosaccharomyces pombe GN=SPAPB24D3.08c PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.745e-28
Identity = 86/216 (39.81%), Postives = 118/216 (54.63%), Query Frame = 1
Query:   49 VLSNKQVILKNYVE---GFPKETDMLV----KASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTP----GSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLI-KNPQGLFKIHHTD--VPLSYYTGILGMPGMTA*AGFYEICAPKKGEYIYVSATSGAVGQIVGQFAKMMGSYVVGSAGSRIKVELLKKQLGFDDAFN 654
            ++SN  VI+K Y++   G+P   + L     +    + +V+E    +L+KN+Y S DPY+R RM   Q P  +S+ P    G P     VAKVV S   ++K G  V   +GWEEY+ + K   G  +  +    +PL  + G LGMP  TA  G   I  PK GE IY+SA SGAVGQ+ GQ AK MG +VVGS GS  K ++     G+D  FN
Sbjct:    1 MVSNNAVIIKKYLDSTAGYPVIGEHLAFEKREFDLENAQVDE-ETPVLLKNIYTSVDPYLRMRM---QSPKHASYIPPLELGKPFYNSTVAKVVKSTLDQYKPGMDVVFVSGWEEYTFVSKQALGFLQPINNPYKLPLIDFVGSLGMPSQTAYCGLKHIGKPKAGETIYISAASGAVGQMAGQLAKAMGLHVVGSVGSDEKFKICLDS-GYDSVFN 211          
BLAST of FC930251 vs. ExPASy Swiss-Prot
Match: PTGR1_MOUSE (Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 6.745e-28
Identity = 82/201 (40.80%), Postives = 110/201 (54.73%), Query Frame = 1
Query:   61 KQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKIH---HTDVPLSYYTGILGMPGMTA*AGFYEICAPKKGEYIYVSATSGAVGQIVGQFAKMMGSYVVGSAGSRIKVELLKKQLGFDDAFN 654
            K   LK + EGFP + +  +K + +       +  +L++ L+LS DPYMR                G  + G  VA+VV+S +  F KG +V    GW  +S I +  GL K+       +PLS   G +GMPG+TA  G  +IC  K GE + VSA +GAVG +VGQ AK+ G  VVG+AGS  KV  LKK LGFD AFN
Sbjct:    5 KSWTLKKHFEGFPTDGNFELKTTELP---PLNNGEVLLEALFLSVDPYMRVAAK--------KLKEGDRMMGEQVARVVESKNSAFPKGTIVAALLGWTSHS-ISDGNGLTKLPVEWPDKLPLSLALGTVGMPGLTAYFGLLDICGVKGGETVMVSAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLKK-LGFDVAFN 192          
BLAST of FC930251 vs. ExPASy Swiss-Prot
Match: YNCB_ECOLI (Putative NADP-dependent oxidoreductase yncB OS=Escherichia coli (strain K12) GN=yncB PE=3 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 7.458e-27
Identity = 73/199 (36.68%), Postives = 109/199 (54.77%), Query Frame = 1
Query:   58 NKQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTP----GSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKIHHTDVPLSYYTGILGMPGMTA*AGFYEICAPKKGEYIYVSATSGAVGQIVGQFAKMMGSYVVGSAGSRIKVELLKKQLGFD 642
            N++ +L +   G P   +  ++   ++     G   +L++ +YLS DPYMR RMS     D  S++P    G  + G  V++VV+S HP+++ GD V G +GW++Y  I +   L K+       S+  G+LGMPG TA  G  +I  PK+GE + V+A +G VG  VGQ  K+ G  VVG AG   K     + LGFD
Sbjct:    8 NRRWVLASRPHGAPVPENFRLEEDDVATP---GEGQVLLRTVYLSLDPYMRGRMS-----DEPSYSPPVDIGGVMVGGTVSRVVESNHPDYQSGDWVLGYSGWQDYD-ISSGDDLVKLGDHPQNPSWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATGPVGATVGQIGKLKGCRVVGVAGGAEKCRHATEVLGFD 197          
BLAST of FC930251 vs. ExPASy Swiss-Prot
Match: PTGR1_RAT (Prostaglandin reductase 1 OS=Rattus norvegicus GN=Ptgr1 PE=2 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 1.272e-26
Identity = 78/197 (39.59%), Postives = 109/197 (55.33%), Query Frame = 1
Query:   73 LKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKIHHT---DVPLSYYTGILGMPGMTA*AGFYEICAPKKGEYIYVSATSGAVGQIVGQFAKMMGSYVVGSAGSRIKVELLKKQLGFDDAFN 654
            LK + EGFP +++  ++ + +       +  +L++ L+LS DPYMR                G  + G  VA+VV+S +  F  G +V    GW  +S I +  GL K+       +PLS   G +GMPG+TA  G  +IC  K GE + V+A +GAVG +VGQ AK+ G  VVG+AGS  KV  LKK LGFD AFN
Sbjct:    9 LKKHFEGFPTDSNFELRTTELP---PLNNGEVLLEALFLSVDPYMRVAAK--------KLKEGDSMMGEQVARVVESKNSAFPTGTIVVALLGWTSHS-ISDGNGLRKLPAEWPDKLPLSLALGTVGMPGLTAYFGLLDICGLKGGETVLVNAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLKK-LGFDVAFN 192          
BLAST of FC930251 vs. ExPASy Swiss-Prot
Match: PTGR1_RABIT (Prostaglandin reductase 1 OS=Oryctolagus cuniculus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.170e-26
Identity = 77/200 (38.50%), Postives = 109/200 (54.50%), Query Frame = 1
Query:   61 KQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQ--GLFKIHHTDVPLSYYTGILGMPGMTA*AGFYEICAPKKGEYIYVSATSGAVGQIVGQFAKMMGSYVVGSAGSRIKVELLKKQLGFDDAFN 654
            K   LK +  G P ++D  +K   +       +  +L++ L+LS DPYMR      ++        G  + G  VA+VV+S +P +  G LV   +GW  +S+    Q   L       +PLS   G +GMPG+TA  G  EIC  K G+ + V+A +GAVG +VGQ AK+ G  VVG+AGS  KV+ LKK +GFD AFN
Sbjct:    5 KNWTLKKHFHGHPTDSDFELKTVELP---PLNNGEVLLEALFLSVDPYMRLGSKRLKE--------GDTMMGQQVARVVESKNPAWPVGTLVLAHSGWASHSISDGQQLEKLLTEWPDTLPLSLALGTVGMPGITAYFGLLEICGAKSGDTVLVNAAAGAVGAVVGQIAKIKGCRVVGAAGSEEKVDYLKK-IGFDFAFN 192          
BLAST of FC930251 vs. ExPASy Swiss-Prot
Match: PTGR1_CAVPO (Prostaglandin reductase 1 OS=Cavia porcellus GN=Ptgr1 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.834e-26
Identity = 78/201 (38.81%), Postives = 114/201 (56.72%), Query Frame = 1
Query:   61 KQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKI---HHTDVPLSYYTGILGMPGMTA*AGFYEICAPKKGEYIYVSATSGAVGQIVGQFAKMMGSYVVGSAGSRIKVELLKKQLGFDDAFN 654
            K   LK + +G P ++D  +K   +   ++ G   +L++ L+LS DPYMR      ++        G+ + G  VA+VV+S +  F  G +V   +GW  +  I + +GL K+       +PLS   G +GMPG+TA  G  E+C  K GE + VSA +GAVG +VGQ AK+ G  VVG+AGS  K+  L KQ+GFD AFN
Sbjct:    5 KSWTLKKHFQGKPTQSDFELKTVELP-PLKNGE--VLLEALFLSVDPYMRIASKRLKE--------GAVMMGQQVARVVESKNSAFPAGSIVLAQSGWTTH-FISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL-KQIGFDAAFN 192          
BLAST of FC930251 vs. ExPASy Swiss-Prot
Match: PTGR1_BOVIN (Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.834e-26
Identity = 81/201 (40.30%), Postives = 110/201 (54.73%), Query Frame = 1
Query:   61 KQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKI---HHTDVPLSYYTGILGMPGMTA*AGFYEICAPKKGEYIYVSATSGAVGQIVGQFAKMMGSYVVGSAGSRIKVELLKKQLGFDDAFN 654
            K   LK +  G+P  +D  +K   +   +++G   +L++ LYL+ DPYMR            S   G  + G  VA+VV+S +  F  G +V   +GW  +S I N + L K+       +PLS   G +GMPG+TA  G  +IC  K GE + VSA +GAVG IVGQ AK+ G  VVG+AGS  KV  LKK  GFD A N
Sbjct:    5 KSWTLKKHFVGYPTNSDFELKTVELP-PLKDGE--VLLEALYLTVDPYMRIMAK--------SLKEGDMMMGEQVARVVESKNSAFPTGTIVLAPSGWTTHS-ISNGEKLEKVLAEWPDTLPLSLALGTVGMPGLTAYFGLLDICGVKGGETVLVSAAAGAVGSIVGQIAKLKGCKVVGTAGSDEKVAWLKKH-GFDVALN 192          
The following BLAST results are available for this feature:
BLAST of FC930251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
P2_ARATH9.605e-7566.02Probable NADP-dependent oxidoreductase P2 OS=Arabi... [more]
P1_ARATH6.226e-7464.39Probable NADP-dependent oxidoreductase P1 OS=Arabi... [more]
YFMJ_BACSU2.477e-3040.50Putative NADP-dependent oxidoreductase yfmJ OS=Bac... [more]
YKM8_SCHPO6.745e-2839.81Zinc-type alcohol dehydrogenase-like protein PB24D... [more]
PTGR1_MOUSE6.745e-2840.80Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1... [more]
YNCB_ECOLI7.458e-2736.68Putative NADP-dependent oxidoreductase yncB OS=Esc... [more]
PTGR1_RAT1.272e-2639.59Prostaglandin reductase 1 OS=Rattus norvegicus GN=... [more]
PTGR1_RABIT2.170e-2638.50Prostaglandin reductase 1 OS=Oryctolagus cuniculus... [more]
PTGR1_CAVPO2.834e-2638.81Prostaglandin reductase 1 OS=Cavia porcellus GN=Pt... [more]
PTGR1_BOVIN4.834e-2640.30Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 P... [more]

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Properties
Property NameValue
Genbank descriptionC34005D07EF PostHarvC1 Citrus clementina cDNA clone C34005D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930251 ID=FC930251; Name=FC930251; organism=Citrus clementina; type=EST; length=655bp
AGAGTGAAACAAGGAAGAAACAGAGCAACGATGGCGGCTAACAGTGAAGT
GTTGAGCAACAAGCAGGTGATATTAAAGAACTATGTAGAAGGGTTTCCCA
AAGAGACAGACATGTTGGTAAAAGCAAGTTCAATTTCATTGAAAGTAGAG
GAAGGCTCAAATGCAATTCTCGTCAAGAATCTTTACTTGTCTTGCGATCC
TTACATGAGAGCTCGAATGTCCTTTAATCAAGATCCTGATTTCTCTTCTT
TCACTCCTGGCTCTCCCATAGAAGGATTTGGAGTGGCTAAGGTGGTGGAT
TCAGGGCACCCAGAATTCAAGAAAGGAGATTTAGTCTGGGGAACAACTGG
GTGGGAAGAGTATAGTCTCATAAAAAATCCTCAGGGCCTCTTTAAAATTC
ATCACACTGATGTTCCCCTTTCTTATTATACTGGAATTCTTGGTATGCCT
GGGATGACAGCTTGAGCTGGTTTTTATGAAATTTGTGCTCCAAAGAAAGG
CGAATACATCTATGTTTCTGCAACATCTGGTGCAGTTGGTCAGATTGTTG
GGCAATTTGCAAAGATGATGGGTAGCTATGTTGTTGGAAGTGCTGGCAGT
AGAATAAAGGTTGAACTACTCAAGAAACAGCTTGGATTTGATGATGCTTT
CAATT
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