FC930252

Overview
NameFC930252
Unique NameFC930252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CLCG_ARATH (Putative chloride channel-like protein CLC-g OS=Arabidopsis thaliana GN=At5g33280 PE=2 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 2.227e-89
Identity = 162/243 (66.67%), Postives = 191/243 (78.60%), Query Frame = 3
Query:   12 HTNDDAIRNLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGSHSNLNHGLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAFNGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPKSNCHDAFSQFSAVDFAK 740
            +TNDDAI+NLFSK+TD EF + S+L+FFVTCF LS+ SYGIVAPAGLFVP IVTGASYGRFVGML+GS+SNLNHGL+AVLGAASFLGG+MRMTVS CV                     SKTVAD FN NIY+LIMK KGFPYL +H EPYMRQL VGDVVT PLQ+F+GIEK   +VHVL+TT HNGFPV+D  PL+  P+L+GLILRAH++TLLKK+ F+P+P +   +  SQF A +FAK
Sbjct:  415 NTNDDAIKNLFSKNTDFEFHYFSVLVFFVTCFFLSIFSYGIVAPAGLFVPVIVTGASYGRFVGMLLGSNSNLNHGLFAVLGAASFLGGTMRMTVSTCVILLELTNNLLLLPMMMVVLLISKTVADGFNANIYNLIMKLKGFPYLYSHAEPYMRQLLVGDVVTGPLQVFNGIEKVETIVHVLKTTNHNGFPVVDGPPLAAAPVLHGLILRAHILTLLKKRVFMPSPVACDSNTLSQFKAEEFAK 657          
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CLCC_ARATH (Chloride channel protein CLC-c OS=Arabidopsis thaliana GN=CLC-C PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 9.124e-59
Identity = 118/244 (48.36%), Postives = 151/244 (61.89%), Query Frame = 3
Query:    9 IHTNDDAIRNLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGSHSNLNHGLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAFNGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPKSNCHDAFSQFSAVDFAK 740
            ++TNDDAIRNLF+  ++ EF  S++ IFFV  + L +++YGI  P+GLF+P I+ GASYGR VG L+G  S L+ GL+++LGAASFLGG+MRMTVSLCV                     SKTVAD FN  +YD I+  KG PY+E H EPYMR L   DVV+  L  F  +EK G +   L+ TRHNGFPVIDE P +E   L G+ LR+HL+ LL+ K F     +          A DF K
Sbjct:  442 LNTNDDAIRNLFTSRSENEFHISTLAIFFVAVYCLGIITYGIAIPSGLFIPVILAGASYGRLVGRLLGPVSQLDVGLFSLLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKTVADCFNRGVYDQIVTMKGLPYMEDHAEPYMRNLVAKDVVSGALISFSRVEKVGVIWQALKMTRHNGFPVIDEPPFTEASELCGIALRSHLLVLLQGKKFSKQRTTFGSQILRSCKARDFGK 685          
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CLCB_ARATH (Chloride channel protein CLC-b OS=Arabidopsis thaliana GN=CLC-B PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.767e-54
Identity = 109/229 (47.60%), Postives = 150/229 (65.50%), Query Frame = 3
Query:   15 TNDDAIRNLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGSHSNLNHGLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAFNGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVVTA--PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPI------LYGLILRAHLITLLKKKAFL 677
            TNDDA+RNLFS +T  EF   S+ IFFV    L + ++GI  P+GLF+P I+ GA+YGR +G  +GS+++++ GLYAVLGAA+ + GSMRMTVSLCV                     +KTV D+FN +IYD+I+  KG P+LE + EP+MR LTVG++  A  P+    G+EK  N+V VL+ T HN FPV+DE  + +  +      L+GLILRAHL+ +LKK+ FL
Sbjct:  433 TNDDAVRNLFSSNTPNEFGMGSLWIFFVLYCILGLFTFGIATPSGLFLPIILMGAAYGRMLGAAMGSYTSIDQGLYAVLGAAALMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYDIILHLKGLPFLEANPEPWMRNLTVGELGDAKPPVVTLQGVEKVSNIVDVLKNTTHNAFPVLDEAEVPQVGLATGATELHGLILRAHLVKVLKKRWFL 661          
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CLCA_ARATH (Chloride channel protein CLC-a OS=Arabidopsis thaliana GN=CLC-A PE=1 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 3.358e-53
Identity = 107/223 (47.98%), Postives = 148/223 (66.37%), Query Frame = 3
Query:   15 TNDDAIRNLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGSHSNLNHGLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAFNGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVVTA--PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFL 677
            TNDDA+RN+FS +T  EF   S+ IFF     L ++++GI  P+GLF+P I+ G++YGR +G  +GS++N++ GLYAVLGAAS + GSMRMTVSLCV                     +KTV D+FN +IY++I+  KG P+LE + EP+MR LTVG++  A  P+   +G+EK  N+V VLR T HN FPV+D    +    L+GLILRAHL+ +LKK+ FL
Sbjct:  434 TNDDAVRNIFSSNTPNEFGMVSLWIFFGLYCILGLITFGIATPSGLFLPIILMGSAYGRMLGTAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMFVLLIAKTVGDSFNLSIYEIILHLKGLPFLEANPEPWMRNLTVGELNDAKPPVVTLNGVEKVANIVDVLRNTTHNAFPVLDGADQNTGTELHGLILRAHLVKVLKKRWFL 656          
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CLCD_ARATH (Chloride channel protein CLC-d OS=Arabidopsis thaliana GN=CLC-D PE=1 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 1.013e-41
Identity = 101/248 (40.73%), Postives = 142/248 (57.26%), Query Frame = 3
Query:   12 HTNDDAIRNLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLV---GSHSNLNHGLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAFNGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVVTAPLQL-FHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKK-----AFLPTPKS--NCHDAFSQFS 722
            +T DDAIRNLFS  T +EF   S+L F    ++L+V+++G   PAG FVP I+ G++YGR VGM V       N+  G YA+LGAASFLGGSMRMTVSLCV                     SK V DAFN  +Y++  + KG P LE+  + +MRQ+   +   +   +    + +  +V  +L + +HNGFPVID     ET ++ GL+LR+HL+ LL+ K     + LP   S  N   +FS+F+
Sbjct:  428 NTQDDAIRNLFSAKTMREFSAQSLLTFLAMFYTLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGMFVVRFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGLYEVQARLKGIPLLESRPKYHMRQMIAKEACQSQKVISLPRVIRVADVASILGSNKHNGFPVIDHTRSGET-LVIGLVLRSHLLVLLQSKVDFQHSPLPCDPSARNIRHSFSEFA 674          
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CLCN6_HUMAN (Chloride transport protein 6 OS=Homo sapiens GN=CLCN6 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.134e-27
Identity = 72/205 (35.12%), Postives = 110/205 (53.66%), Query Frame = 3
Query:   21 DDAIRNLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGSHSNLNH---GLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAFNGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYG 626
            + AI  LF +D    F   ++ +FFV  F L+  +YGI  P+GLFVP+++ GA++GR V  ++ S+  L H   G +A++GAA+FLGG +RMT+SL V                     +K   D FN  IYD+ +  +G P LE   E  M +L   D++   L   +   +  ++V +LRTT H+ FPV+ EN  +E   + G
Sbjct:  447 ESAILQLFHQDGT--FSPVTLALFFVLYFLLACWTYGISVPSGLFVPSLLCGAAFGRLVANVLKSYIGLGHIYSGTFALIGAAAFLGGVVRMTISLTVILIESTNEITYGLPIMVTLMVAKWTGDFFNKGIYDIHVGLRGVPLLEWETEVEMDKLRASDIMEPNLTYVYPHTRIQSLVSILRTTVHHAFPVVTENRGNEKEFMKG 649          
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CLCN6_RABIT (Chloride transport protein 6 OS=Oryctolagus cuniculus GN=CLCN6 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.500e-26
Identity = 70/205 (34.15%), Postives = 110/205 (53.66%), Query Frame = 3
Query:   21 DDAIRNLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGSHSNLNH---GLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAFNGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYG 626
            + AI  LF +D    F   ++ +FFV  F L+  +YGI  P+GLFVP+++ GA++GR V  ++ S+  L+H   G ++++GAA+ LGG +RMT+SL V                     +K   D FN  IYD+ +  +G P LE   E  M +L   D++   L   +   +  ++V +LRTT H+ FPV+ EN  +E   + G
Sbjct:  447 ESAILQLFHQDGT--FSPITLALFFVLYFLLACWTYGISVPSGLFVPSLLCGAAFGRLVANVLKSYIGLSHIYSGTFSLIGAAALLGGVVRMTISLTVILIESTNEITYGLPIMITLMVAKWTGDFFNKGIYDIHVGLRGVPLLEWETEVEMDKLRASDIMEPNLTYVYPHTRIQSLVSILRTTVHHAFPVVTENRGNEKEFMKG 649          
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CLCN6_MOUSE (Chloride transport protein 6 OS=Mus musculus GN=Clcn6 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.796e-26
Identity = 68/208 (32.69%), Postives = 111/208 (53.37%), Query Frame = 3
Query:   12 HTNDDAIRNLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGSHSNLNH---GLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAFNGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYG 626
            ++ + AI  LF +D    F   ++ +FF+  F L+  ++G   P+GLFVP+++ GA++GR V  ++ S+  L H   G +A++GAA+FLGG +RMT+SL V                     +K   D FN  IYD+ +  +G P LE   +  M +L   D++   L   +   +  ++V +LRTT H+ FPV+ EN  +E   + G
Sbjct:  445 NSQESAILQLFHQDGT--FSPVTLALFFILYFLLACWTFGTSVPSGLFVPSLLCGAAFGRLVANVLKSYIGLGHLYSGTFALIGAAAFLGGVVRMTISLTVILIESTNEITYGLPIMVTLMVAKWTGDLFNKGIYDVHIGLRGVPLLEWETDVEMDKLRASDIMEPNLTYVYPHTRIQSLVSILRTTVHHAFPVVTENRGNEKEFMKG 650          
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CLCN7_BOVIN (H(+)/Cl(-) exchange transporter 7 OS=Bos taurus GN=CLCN7 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.018e-25
Identity = 72/228 (31.58%), Postives = 121/228 (53.07%), Query Frame = 3
Query:   12 HTNDDAIRNLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGM----LVGSHSNLNHGLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAFNGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTT--RHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFL 677
            +T + ++ +LF  D    +   ++ +F +  F L+  +YG+   AG+F+P+++ GA++GR  G+    + G+    + G YA++GAA+ LGG +RMT+SL V                     +K V D F   +YD+ ++ +  P+L          LT  +V++ P+      EK G +V VL +T   HNGFPV+++   ++   L GLILR+ LI LLK K F+
Sbjct:  472 NTPEKSVVSLFH-DPPGSYNPMTLGLFTLVYFFLACWTYGLTVSAGVFIPSLLIGAAWGRLFGISLSYITGAAVWADPGKYALMGAAAQLGGIVRMTLSLTVIMMEATSSVTYGFPIMLVLMTAKIVGDVFIEGLYDMHIQLQSVPFLHWEAPVTSHSLTAREVMSTPVTCLRRREKVGVIVDVLSSTASNHNGFPVVEDADGTQPARLQGLILRSQLIVLLKHKVFV 698          
BLAST of FC930252 vs. ExPASy Swiss-Prot
Match: CLCN7_RAT (H(+)/Cl(-) exchange transporter 7 OS=Rattus norvegicus GN=Clcn7 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.737e-25
Identity = 73/228 (32.02%), Postives = 120/228 (52.63%), Query Frame = 3
Query:   12 HTNDDAIRNLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGM----LVGSHSNLNHGLYAVLGAASFLGGSMRMTVSLCVXXXXXXXXXXXXXXXXXXXXXSKTVADAFNGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTT--RHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFL 677
            +T + ++ +LF  D    +   ++ +F +  F L+  +YG+   AG+F+P+++ GA++GR  G+    L G+    + G YA++GAA+ LGG +RMT+SL V                     +K V D F   +YD+ ++ +  P+L          LT  +V++ P+      EK G +V VL  T   HNGFPV+++   ++   L GLILR+ LI LLK K F+
Sbjct:  466 NTPEKSVVSLFH-DPPGSYNPMTLGLFTLVYFFLACWTYGLTVSAGVFIPSLLIGAAWGRLFGISMSYLTGAAIWADPGKYALMGAAAQLGGIVRMTLSLTVIMMEATSNVTYGFPIMLVLMTAKIVGDVFIEGLYDMHIQLQSVPFLHWEAPVTSHSLTAREVMSTPVTCLRRREKVGIIVDVLSDTASNHNGFPVVEDVGDTQPARLQGLILRSQLIVLLKHKVFV 692          
The following BLAST results are available for this feature:
BLAST of FC930252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CLCG_ARATH2.227e-8966.67Putative chloride channel-like protein CLC-g OS=Ar... [more]
CLCC_ARATH9.124e-5948.36Chloride channel protein CLC-c OS=Arabidopsis thal... [more]
CLCB_ARATH6.767e-5447.60Chloride channel protein CLC-b OS=Arabidopsis thal... [more]
CLCA_ARATH3.358e-5347.98Chloride channel protein CLC-a OS=Arabidopsis thal... [more]
CLCD_ARATH1.013e-4140.73Chloride channel protein CLC-d OS=Arabidopsis thal... [more]
CLCN6_HUMAN4.134e-2735.12Chloride transport protein 6 OS=Homo sapiens GN=CL... [more]
CLCN6_RABIT3.500e-2634.15Chloride transport protein 6 OS=Oryctolagus cunicu... [more]
CLCN6_MOUSE7.796e-2632.69Chloride transport protein 6 OS=Mus musculus GN=Cl... [more]
CLCN7_BOVIN1.018e-2531.58H(+)/Cl(-) exchange transporter 7 OS=Bos taurus GN... [more]
CLCN7_RAT1.737e-2532.02H(+)/Cl(-) exchange transporter 7 OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionC34005D08EF PostHarvC1 Citrus clementina cDNA clone C34005D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930252 ID=FC930252; Name=FC930252; organism=Citrus clementina; type=EST; length=740bp
AGCCTAATATTCATACAAATGATGATGCTATCAGAAACCTTTTCAGCAAG
GACACTGATAAGGAGTTTCAGCATTCATCAATGCTCATATTTTTTGTCAC
ATGCTTTTCTCTTAGTGTTTTAAGCTATGGGATTGTTGCTCCTGCCGGTC
TTTTTGTTCCTGCTATTGTTACGGGAGCATCCTATGGACGGTTTGTTGGA
ATGTTAGTTGGTTCACACTCAAATCTTAATCATGGCCTTTATGCTGTGCT
GGGTGCTGCTTCATTTCTTGGTGGATCCATGAGGATGACAGTTTCTCTAT
GTGTTAATATCCTAGAACTAACTAATAATCTACTATTGCTGCCTATGATA
ATGCTGGTTCTTCTCATTTCCAAGACTGTAGCAGATGCTTTCAATGGCAA
TATATATGACCTGATAATGAAGGCAAAGGGATTTCCTTATCTGGAAACTC
ATGTTGAGCCTTACATGAGACAGCTGACGGTTGGTGATGTAGTTACAGCC
CCTCTTCAGCTGTTTCATGGAATTGAGAAGGCTGGTAATGTAGTTCATGT
TCTCAGAACTACAAGGCATAACGGATTTCCTGTAATTGACGAGAATCCAC
TTTCCGAGACCCCAATTCTCTATGGTTTAATCCTTCGAGCCCACCTCATT
ACACTGTTAAAGAAGAAAGCTTTCTTGCCCACTCCAAAATCCAACTGTCA
TGATGCTTTCAGTCAGTTCTCAGCAGTGGATTTTGCAAAA
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