FC930253

Overview
NameFC930253
Unique NameFC930253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930253 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.126e-45
Identity = 92/216 (42.59%), Postives = 133/216 (61.57%), Query Frame = 2
Query:   74 VPSVQELAIQQP-EAVPPRYIRDHVVGDHVITVNPSSDRVPLIDMNKLVDPDSQDAELRRLHSACKHWGLFQLINHGAADESLRNMKKQAQEFFDLPLEEKKRWGQKPGSLEGYGQAFVISEEQKLDWNDMIFLRTLPHEIRKLDLWPEHPPKFRETLETYSEEMRKVATSLVRSMAMALELEAQEISDAY--XEGLYEVRTTLYPPLSEX*AVIG 712
            VPSVQE+  ++    VPPRY+R       V         +P+IDM +L    + D+E+ +L  ACK WG FQL+NHG     L  +K + Q+FF+LP+EEKK++ Q+P  +EG+GQAFV+SE+QKLDW D+ F    P E+RK  L+P+ P  FR+TLE YS E++ VA  L+  MA ALE++ +E+   +   + +  +R   YPP  +   VIG
Sbjct:   14 VPSVQEMVKEKTITTVPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKRLCSSTTMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQAFVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQSVAKILIAKMARALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIG 229          
BLAST of FC930253 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.116e-42
Identity = 88/186 (47.31%), Postives = 120/186 (64.52%), Query Frame = 2
Query:   68 LPVPSVQELAIQQPEAVPPRYIRDHVVGDHVITVNPSSDRVPLIDMNKLVDPDSQDAELRRLHSACKHWGLFQLINHGAADESLRNMKKQAQEFFDLPLEEKKRWGQKPGSLEGYGQAFVISEEQKLDWNDMIFLRTLPHEIRKLDLWPEHPPKFRETLETYSEEMRKVATSLVRSMAMALELEAQ 625
            LPV +VQ LA ++ + +P RY+R  +  D V+ ++ S + +P+ID+++L+D      EL + HSAC  WG FQLINHG  +E +  MK   ++FF LP +EK  + Q P  +EGYGQAFV SEEQKLDW DM FL T P + R +  WP  P  FRET+E YS E++KVA  L   MA  L LE++
Sbjct:   12 LPVENVQVLAGKELKNLPNRYVRPELEHDDVVPIDNSLE-IPVIDLSRLLDQQYACDELAKFHSACLDWGFFQLINHGVREEVIEKMKVDTEDFFRLPFKEKNAYRQLPNGMEGYGQAFVTSEEQKLDWADMHFLITKPVQERNMRFWPTSPTSFRETMEKYSMELQKVAMCLTGMMAKNLGLESE 196          
BLAST of FC930253 vs. ExPASy Swiss-Prot
Match: FLS_SOLTU (Flavonol synthase/flavanone 3-hydroxylase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.324e-27
Identity = 69/197 (35.03%), Postives = 110/197 (55.84%), Query Frame = 2
Query:  110 EAVPPRYIRDHVVGDHVITVNPSSDRVPLIDMNKLVDPDSQDAELRRLHSACKHWGLFQLINHGAADESLRNMKKQAQEFFD-LPLEEKKRWGQKPG--SLEGYGQAFVISEEQKLDWNDMIFLRTLPHEIRKLDLWPEHPPKFRETLETYSEEMRKVATSLVRSMAMALELEAQEISDA--YXEGLYEVRTTLYPP 685
            + +P  YIR         T+      VP+ID++ +   D ++  ++ +  A K WG+FQ+INHG  DE + N++K  +EFF+ +P EEK+   +KPG  SLEGYG +     E K  W D +F +  P        WP++PP +RE  E Y++ +RKVA  + RS+++ L LE  E+ +A    + +Y ++   YPP
Sbjct:   31 DTIPSEYIRSENEQPAATTLQGVVLEVPVIDISNV--DDDEEKLVKEIVEASKEWGIFQVINHGIPDEVIENLQKVGKEFFEEVPQEEKELIAKKPGAQSLEGYGTSLQKEIEGKKGWVDHLFHKIWPPSAINYRYWPKNPPSYREANEEYAKWLRKVADGIFRSLSLGLGLEGHEMMEAAGSEDIVYMLKINYYPP 225          
BLAST of FC930253 vs. ExPASy Swiss-Prot
Match: FLS_PETHY (Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.261e-26
Identity = 68/197 (34.52%), Postives = 110/197 (55.84%), Query Frame = 2
Query:  110 EAVPPRYIRDHVVGDHVITVNPSSDRVPLIDMNKLVDPDSQDAELRRLHSACKHWGLFQLINHGAADESLRNMKKQAQEFFD-LPLEEKKRWGQKPGS--LEGYGQAFVISEEQKLDWNDMIFLRTLPHEIRKLDLWPEHPPKFRETLETYSEEMRKVATSLVRSMAMALELEAQEISDAY--XEGLYEVRTTLYPP 685
            + +P  YIR         T++    +VP+ID+    DPD ++  ++ +  A K WG+FQLINHG  DE++ +++K  +EFF+ +P EEK+   + PGS  +EGYG +     E K  W D +F +  P        WP++PP +RE  E Y + MR+V   + +S+++ L LE  E+ +A    E +Y ++   YPP
Sbjct:   29 DTIPSEYIRSENEQPAATTLHGVVLQVPVIDLR---DPD-ENKMVKLIADASKEWGIFQLINHGIPDEAIADLQKVGKEFFEHVPQEEKELIAKTPGSNDIEGYGTSLQKEVEGKKGWVDHLFHKIWPPSAVNYRYWPKNPPSYREANEEYGKRMREVVDRIFKSLSLGLGLEGHEMIEAAGGDEIVYLLKINYYPP 221          
BLAST of FC930253 vs. ExPASy Swiss-Prot
Match: FLS_EUSGR (Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma grandiflorum GN=FLS PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.375e-23
Identity = 66/213 (30.99%), Postives = 111/213 (52.11%), Query Frame = 2
Query:   68 LPVPSVQELAIQQP--EAVPPRYIRDHVVGDHVITVNPSSDRVPLIDMNKLVDPDSQDAELRRLHS-ACKHWGLFQLINHGAADESLRNMKKQAQEFFDLPLEEKKRWGQKPGS--LEGYGQAFVISEEQKLDWNDMIFLRTLPHEIRKLDLWPEHPPKFRETLETYSEEMRKVATSLVRSMAMALELEAQEISDAY--XEGLYEVRTTLYPP 685
            + V  VQE+A      + +P  YIR       + TV+     VP+ID++     DS + ++  L S A K WG+FQ++NHG  +E +R +++  + FF+LP EEK+   +  GS  +EGYG       + K  W D +F +  P        WP++PP +RE  E Y++ ++ V  +L + +++ L+LE     D     + +Y ++   YPP
Sbjct:    1 MEVQRVQEIASLSKVIDTIPAEYIRSENEQPVISTVHGVVLEVPVIDLS-----DSDEKKIVGLVSEASKEWGIFQVVNHGIPNEVIRKLQEVGKHFFELPQEEKELIAKPEGSQSIEGYGTRLQKEVDGKKGWVDHLFHKIWPPSAINYQFWPKNPPAYREANEEYAKRLQLVVDNLFKYLSLGLDLEPNSFKDGAGGDDLVYLMKINYYPP 208          
BLAST of FC930253 vs. ExPASy Swiss-Prot
Match: LDOX_PETHY (Leucoanthocyanidin dioxygenase OS=Petunia hybrida GN=ANT17 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.518e-23
Identity = 62/221 (28.05%), Postives = 110/221 (49.77%), Query Frame = 2
Query:   83 VQELAIQQPEAVPPRYIR--DHVVGDHVITVNPSSDRVPLIDMNKLVDPDSQDAELR----RLHSACKHWGLFQLINHGAADESLRNMKKQAQEFFDLPLEEKKRWG--QKPGSLEGYGQAFVISEEQKLDWNDMIFLRTLPHEIRKLDLWPEHPPKFRETLETYSEEMRKVATSLVRSMAMALELEAQEIS---DAYXEGLYEVRTTLYPPLSEX*AVIG 712
            V+ LA    +A+P  Y+R  + + G   I      D  P +    L + DS+D E+R    +L  A   WG+  L+NHG +DE +  +K   + FFD P+EEK+++   Q  G+++GYG     S   +L+W D  F    P + R L +WP++P  +      Y++++R +AT ++  +++ L LE   +        + L +++   YP   +    +G
Sbjct:   12 VESLAKSGIQAIPKEYVRPQEELNGIGNIFEEEKKDEGPQVPTIDLKEIDSEDKEIREKCHQLKKAAMEWGVMHLVNHGISDELINRVKVAGETFFDQPVEEKEKYANDQANGNVQGYGSKLANSACGQLEWEDYFFHCAFPEDKRDLSIWPKNPTDYTPATSEYAKQIRALATKILTVLSIGLGLEEGRLEKEVGGMEDLLLQMKINYYPKCPQPELALG 232          
BLAST of FC930253 vs. ExPASy Swiss-Prot
Match: LDOX_PERFR (Leucoanthocyanidin dioxygenase OS=Perilla frutescens GN=ANS PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.282e-22
Identity = 66/232 (28.45%), Postives = 119/232 (51.29%), Query Frame = 2
Query:   71 PVPSVQELAIQQPEAVPPRYIRDH-----VVGDHVITVNPSSD--RVPLIDMNKLVDPDSQDAELRR-----LHSACKHWGLFQLINHGAADESLRNMKKQAQEFFDLPLEEKKRWG--QKPGSLEGYGQAFVISEEQKLDWNDMIFLRTLPHEIRKLDLWPEHPPKFRETLETYSEEMRKVATSLVRSMAMALELE----AQEISDAYXEGLYEVRTTLYPPLSEX*AVIG 712
            P P V+ELA    + +P  Y+R       ++G+ ++    SS+  ++P ID+ ++   DS+D E R+     L  A   WG+  LINHG  +E +  +K   +EFF+LP+EEK+ +   Q  G+++GYG     +   +L+W D  F    P     L +WP  PP +      Y++++R +AT ++  +++ L LE     +E+  A  + + +++   YP   +    +G
Sbjct:    8 PSPRVEELARSGLDTIPKDYVRPEEELKSIIGN-ILAEEKSSEGPQLPTIDLEEM---DSRDEEGRKKCHEELKKAATDWGVMHLINHGIPEELIDRVKAAGKEFFELPVEEKEAYANDQAAGNVQGYGSKLANNASGQLEWEDYFFHCVYPEHKTDLSIWPTKPPDYIPATSEYAKQLRALATKILSVLSIGLGLEKGRLEKEVGGA-EDLIVQMKINFYPKCPQPELALG 234          
BLAST of FC930253 vs. ExPASy Swiss-Prot
Match: FLS_MALDO (Flavonol synthase/flavanone 3-hydroxylase OS=Malus domestica GN=FLS PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.675e-22
Identity = 66/212 (31.13%), Postives = 107/212 (50.47%), Query Frame = 2
Query:   74 VPSVQELAIQQPEAVPPRYIRDHVVGDHVITVNPSSDRVPLIDMNKLVDPDSQDAELRRLHSACKHWGLFQLINHGAADESLRNMKKQAQEFFDLPLEEKKRWGQKP--GSLEGYGQAFV--ISEEQ--KLDWNDMIFLRTLPHEIRKLDLWPEHPPKFRETLETYSEEMRKVATSLVRSMAMALELEAQEISDAY-XEGL-YEVRTTLYPP 685
            V SV+         +P  +IR       + TV+     VP+ID +   DPD +   + ++  A  +WG++Q++NH    E +  ++   +EFF+LP EEK+ + + P   S+EGYG      ISE    K  W D +F +  P  +     WP++PP +RE  E Y++ +  V   L R +++ L LE QE+  A   + L Y ++   YPP
Sbjct:    3 VESVERERESNEGTIPAEFIRSENEQPGITTVHGKVLEVPIIDFS---DPDEEKL-IVQITEASSNWGMYQIVNHDIPSEVISKLQAVGKEFFELPQEEKEAYAKPPDSASIEGYGTKLFKEISEGDTTKKGWVDNLFNKIWPPSVVNYQFWPKNPPSYREANEEYAKHLHNVVEKLFRLLSLGLGLEGQELKKAAGGDNLEYLLKINYYPP 210          
BLAST of FC930253 vs. ExPASy Swiss-Prot
Match: LDOX_MALDO (Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.731e-22
Identity = 60/226 (26.55%), Postives = 113/226 (50.00%), Query Frame = 2
Query:   83 VQELAIQQPEAVPPRYIRDHVVGDHVITV--------NPSSDRVPLIDMNKLVDPDSQDAELR---RLHSACKHWGLFQLINHGAADESLRNMKKQAQEFFDLPLEEKKRWG--QKPGSLEGYGQAFVISEEQKLDWNDMIFLRTLPHEIRKLDLWPEHPPKFRETLETYSEEMRKVATSLVRSMAMALELEAQEIS---DAYXEGLYEVRTTLYPPLSEX*AVIG 712
            V+ LA      +P  YIR     D ++ +        N    +VP ID+ K ++ D++    +   +L  A   WG+  L+NHG +DE +  ++K  + FFDLP+E+K+++   Q  G ++GYG     +   +L+W D  F    P + R L +WP+ P  + E    Y++++R++AT +++ +++ L L+   +        E L +++   YP   +    +G
Sbjct:   11 VETLAGSGISTIPKEYIRPK---DELVNIGDIFEQEKNNEGPQVPTIDL-KEIESDNEKVRAKCREKLKKAAVDWGVMHLVNHGISDELMDKVRKAGKAFFDLPIEQKEKYANDQASGKIQGYGSKLANNASGQLEWEDYFFHCVYPEDKRDLSIWPQTPADYIEATAEYAKQLRELATKVLKVLSLGLGLDEGRLEKEVGGLEELLLQMKINYYPKCPQPELALG 232          
BLAST of FC930253 vs. ExPASy Swiss-Prot
Match: FLS1_ARATH (Flavonol synthase/flavanone 3-hydroxylase OS=Arabidopsis thaliana GN=FLS1 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22
Identity = 65/216 (30.09%), Postives = 109/216 (50.46%), Query Frame = 2
Query:   68 LPVPSVQELAIQQ--PEAVPPRYIRDHVVGDHVITVNPSSDRVPLIDMNKLVDPDSQDAELRRLHSACKHWGLFQLINHGAADESLRNMKKQAQEFFDLPLEEKKRWGQKPGS--LEGYGQAFVISEEQKLDWNDMIFLRTLPHEIRKLDLWPEHPPKFRETLETYSEEMRKVATSLVRSMAMALELEAQEISDAYXEGL------YEVRTTLYPP 685
            + V  VQ+++      EA+P  +IR       + T    +  +P++D++   DPD +    R +  A + WGLFQ++NHG   E +R ++   ++FF+LP  EK+   +   S  +EGYG       E K  W D +F R  P        WP++PP++RE  E Y+  ++K++ +L+  ++  L L+     DA  EGL      Y ++   YPP
Sbjct:    1 MEVERVQDISSSSLLTEAIPLEFIRSEKEQPAITTFRGPTPAIPVVDLS---DPDEESVR-RAVVKASEEWGLFQVVNHGIPTELIRRLQDVGRKFFELPSSEKESVAKPEDSKDIEGYGTKLQKDPEGKKAWVDHLFHRIWPPSCVNYRFWPKNPPEYREVNEEYAVHVKKLSETLLGILSDGLGLK----RDALKEGLGGEMAEYMMKINYYPP 208          
The following BLAST results are available for this feature:
BLAST of FC930253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
SRG1_ARATH9.126e-4542.59Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
NCS1_COPJA1.116e-4247.31S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
FLS_SOLTU1.324e-2735.03Flavonol synthase/flavanone 3-hydroxylase OS=Solan... [more]
FLS_PETHY3.261e-2634.52Flavonol synthase/flavanone 3-hydroxylase OS=Petun... [more]
FLS_EUSGR3.375e-2330.99Flavonol synthase/flavanone 3-hydroxylase OS=Eusto... [more]
LDOX_PETHY7.518e-2328.05Leucoanthocyanidin dioxygenase OS=Petunia hybrida ... [more]
LDOX_PERFR1.282e-2228.45Leucoanthocyanidin dioxygenase OS=Perilla frutesce... [more]
FLS_MALDO1.675e-2231.13Flavonol synthase/flavanone 3-hydroxylase OS=Malus... [more]
LDOX_MALDO3.731e-2226.55Leucoanthocyanidin dioxygenase OS=Malus domestica ... [more]
FLS1_ARATH6.364e-2230.09Flavonol synthase/flavanone 3-hydroxylase OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionC34005D09EF PostHarvC1 Citrus clementina cDNA clone C34005D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930253 ID=FC930253; Name=FC930253; organism=Citrus clementina; type=EST; length=712bp
GGTAATTAATCAATAAACAGAAATGGAAGCTGAAGCAGCAGCGGCAACAC
TCAACCTTGAATGCTGTCTCCCAGTTCCAAGCGTGCAAGAGCTTGCAATC
CAACAGCCCGAAGCGGTGCCGCCTAGGTACATAAGAGATCATGTGGTTGG
TGACCACGTCATCACTGTTAATCCCTCTTCCGATCGTGTACCGTTGATTG
ATATGAACAAGTTAGTCGACCCTGATTCCCAAGATGCAGAGTTACGAAGA
TTACACTCTGCTTGCAAACACTGGGGCCTATTCCAGTTGATAAACCATGG
AGCAGCTGATGAATCGCTGAGGAACATGAAGAAGCAAGCTCAAGAGTTCT
TTGATCTTCCTTTAGAAGAAAAGAAGCGCTGGGGGCAGAAGCCAGGAAGT
CTTGAAGGCTATGGTCAAGCATTTGTCATCTCAGAAGAACAAAAACTTGA
TTGGAATGACATGATCTTCCTCAGAACTCTGCCCCATGAAATCAGGAAGT
TAGATTTATGGCCTGAACACCCCCCAAAATTCAGAGAGACTTTGGAGACT
TATTCTGAAGAGATGAGGAAAGTTGCCACTTCTTTAGTGAGGTCCATGGC
TATGGCACTTGAGCTTGAGGCTCAAGAAATCTCTGATGCTTACCNAGAAG
GACTGTATGAAGTGAGGACGACTTTGTATCCTCCTTTGTCTGAANCCTGA
GCGGTCATTGGG
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