FC930261

Overview
NameFC930261
Unique NameFC930261
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15093 contig Ccv1_Contig15093:13..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: ERF1X_ARATH (Eukaryotic peptide chain release factor subunit 1-1 OS=Arabidopsis thaliana GN=ERF1-1 PE=2 SV=2)

HSP 1 Score: 286.574 bits (732), Expect = 8.563e-77
Identity = 144/177 (81.36%), Postives = 151/177 (85.31%), Query Frame = 2
Query:  131 MADGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLTFPR 661
            M D  + DKN                RGNGTSMISLIMPPRDQVSRVTKMLGDE+GTASNIKSRVNRQSVLGAITSAQQRLKLYN+VPPNGLVLYTGTIV +DGKEKKVTIDFEPFRPINASLYLCDNKFHT+ALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH   +  P+
Sbjct:    1 MGDKNDDDKNIEIWKIKKLIKSLEAARGNGTSMISLIMPPRDQVSRVTKMLGDEYGTASNIKSRVNRQSVLGAITSAQQRLKLYNRVPPNGLVLYTGTIVNEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPK 177          
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: ERF1Z_ARATH (Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 3.254e-76
Identity = 145/177 (81.92%), Postives = 152/177 (85.88%), Query Frame = 2
Query:  131 MADGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLTFPR 661
            MAD QE+DKN                RGNGTSMISLIMPPRDQV+RVTKML DE+GTASNIKSRVNRQSVL AITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPF+PINASLYLCDNKFHT+ LNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH   +  P+
Sbjct:    1 MAD-QESDKNIEIWKIKKLIKGLETARGNGTSMISLIMPPRDQVARVTKMLADEYGTASNIKSRVNRQSVLSAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEPLNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPK 176          
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: ERF1Y_ARATH (Eukaryotic peptide chain release factor subunit 1-2 OS=Arabidopsis thaliana GN=ERF1-2 PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.047e-74
Identity = 141/173 (81.50%), Postives = 146/173 (84.39%), Query Frame = 2
Query:  143 QETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLTFPR 661
            +E D N                RGNGTSMISLIMPPRDQVSRVTKMLGDE+GTASNIKSRVNRQSVL AITSAQQRLKLYNKVP NGLVLYTGTIV DDGKEKKVT DFEPFRPINASLYLCDNKFHT+ALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLH   +  P+
Sbjct:    3 EEADTNIEIWKIKKLIKGLESARGNGTSMISLIMPPRDQVSRVTKMLGDEYGTASNIKSRVNRQSVLSAITSAQQRLKLYNKVPTNGLVLYTGTIVNDDGKEKKVTFDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPK 175          
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: ERF1_POLMI (Eukaryotic peptide chain release factor subunit 1 OS=Polyandrocarpa misakiensis GN=ERF1 PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.761e-67
Identity = 129/178 (72.47%), Postives = 141/178 (79.21%), Query Frame = 2
Query:  131 MADGQET-DKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLTFPR 661
            MA+ + T D+N                RGNGTSMISLI+PP+DQVSRV KML DEFGTASNIKSRVNR SVLGAITS QQRLKLYNKVPPNGLV+Y GTIVTD+GKEKKV IDFEPF+PIN SLYLCDNKFHT+AL  LL  D+KFGFIVMDGNG LFGTL GNTREVLH   +  P+
Sbjct:    1 MAETETTADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQVSRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTDEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDNKFGFIVMDGNGALFGTLQGNTREVLHKFTVDLPK 178          
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: ERF1_DROME (Eukaryotic peptide chain release factor subunit 1 OS=Drosophila melanogaster GN=eRF1 PE=1 SV=2)

HSP 1 Score: 249.98 bits (637), Expect = 8.882e-66
Identity = 125/176 (71.02%), Postives = 139/176 (78.98%), Query Frame = 2
Query:  140 GQET--DKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLTFPR 661
            G+ET  D+N                RGNGTSMISLI+PP+DQ+SRV+KML DEFGTASNIKSRVNR SVLGAITS Q RLKLY KVPPNGLV+Y GTIVT++GKEKKV IDFEPF+PIN SLYLCDNKFHT+AL  LL  D+KFGFIVMDGNG LFGTL GNTREVLH   +  P+
Sbjct:    3 GEETSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASNIKSRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIVMDGNGALFGTLQGNTREVLHKFTVDLPK 178          
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: ERF1_XENTR (Eukaryotic peptide chain release factor subunit 1 OS=Xenopus tropicalis GN=etf1 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.515e-65
Identity = 123/175 (70.29%), Postives = 136/175 (77.71%), Query Frame = 2
Query:  137 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLTFPR 661
            D    D+N                RGNGTSMISLI+PP+DQ+SRV KML DEFGTASNIKSRVNR SVLGAITS QQRLKLYNKVPPNGLV+Y GTIVT++GKEKKV IDFEPF+PIN SLYLCDNKFHT+AL  LL  D KFGFIV+DG+G LFGTL GNTREVLH   +  P+
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPK 178          
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: ERF1_XENLA (Eukaryotic peptide chain release factor subunit 1 OS=Xenopus laevis GN=etf1 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.515e-65
Identity = 123/175 (70.29%), Postives = 136/175 (77.71%), Query Frame = 2
Query:  137 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLTFPR 661
            D    D+N                RGNGTSMISLI+PP+DQ+SRV KML DEFGTASNIKSRVNR SVLGAITS QQRLKLYNKVPPNGLV+Y GTIVT++GKEKKV IDFEPF+PIN SLYLCDNKFHT+AL  LL  D KFGFIV+DG+G LFGTL GNTREVLH   +  P+
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPK 178          
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: ERF1_RAT (Eukaryotic peptide chain release factor subunit 1 OS=Rattus norvegicus GN=Etf1 PE=2 SV=3)

HSP 1 Score: 249.21 bits (635), Expect = 1.515e-65
Identity = 123/175 (70.29%), Postives = 136/175 (77.71%), Query Frame = 2
Query:  137 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLTFPR 661
            D    D+N                RGNGTSMISLI+PP+DQ+SRV KML DEFGTASNIKSRVNR SVLGAITS QQRLKLYNKVPPNGLV+Y GTIVT++GKEKKV IDFEPF+PIN SLYLCDNKFHT+AL  LL  D KFGFIV+DG+G LFGTL GNTREVLH   +  P+
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPK 178          
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: ERF1_RABIT (Eukaryotic peptide chain release factor subunit 1 OS=Oryctolagus cuniculus GN=ETF1 PE=2 SV=3)

HSP 1 Score: 249.21 bits (635), Expect = 1.515e-65
Identity = 123/175 (70.29%), Postives = 136/175 (77.71%), Query Frame = 2
Query:  137 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLTFPR 661
            D    D+N                RGNGTSMISLI+PP+DQ+SRV KML DEFGTASNIKSRVNR SVLGAITS QQRLKLYNKVPPNGLV+Y GTIVT++GKEKKV IDFEPF+PIN SLYLCDNKFHT+AL  LL  D KFGFIV+DG+G LFGTL GNTREVLH   +  P+
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPK 178          
BLAST of FC930261 vs. ExPASy Swiss-Prot
Match: ERF1_PONAB (Eukaryotic peptide chain release factor subunit 1 OS=Pongo abelii GN=ETF1 PE=2 SV=3)

HSP 1 Score: 249.21 bits (635), Expect = 1.515e-65
Identity = 123/175 (70.29%), Postives = 136/175 (77.71%), Query Frame = 2
Query:  137 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHSSVLTFPR 661
            D    D+N                RGNGTSMISLI+PP+DQ+SRV KML DEFGTASNIKSRVNR SVLGAITS QQRLKLYNKVPPNGLV+Y GTIVT++GKEKKV IDFEPF+PIN SLYLCDNKFHT+AL  LL  D KFGFIV+DG+G LFGTL GNTREVLH   +  P+
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPK 178          
The following BLAST results are available for this feature:
BLAST of FC930261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
ERF1X_ARATH8.563e-7781.36Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1Z_ARATH3.254e-7681.92Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1Y_ARATH1.047e-7481.50Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1_POLMI2.761e-6772.47Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DROME8.882e-6671.02Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_XENTR1.515e-6570.29Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_XENLA1.515e-6570.29Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RAT1.515e-6570.29Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RABIT1.515e-6570.29Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_PONAB1.515e-6570.29Eukaryotic peptide chain release factor subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionC34005E05EF PostHarvC1 Citrus clementina cDNA clone C34005E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930261 ID=FC930261; Name=FC930261; organism=Citrus clementina; type=EST; length=689bp
GACTTTTATTCTTATTACATCCTCCCTTCTCCTACGAGTTAAGCAAATTC
CATCCTCTTGTTTGTTAGAAACCGATCTGCAATTCTCGGTGCTTTTATCA
CTGTTTTAGAGTTACTGTATCCACTTTACAATGGCAGATGGTCAGGAGAC
TGATAAAAATATTGAGATTTGGAAGATTAAGAAGTTGATCAAAGCACTTG
AAGCTGCTAGAGGAAATGGTACCAGCATGATATCTTTAATCATGCCTCCT
CGTGATCAGGTATCACGAGTCACAAAAATGCTGGGTGATGAGTTTGGAAC
TGCTTCAAACATCAAAAGCAGGGTCAATCGTCAATCTGTATTGGGTGCAA
TCACATCTGCTCAGCAAAGATTGAAGCTTTACAACAAGGTCCCTCCCAAT
GGGCTTGTGCTGTACACGGGAACAATTGTTACTGATGATGGGAAGGAAAA
GAAGGTTACAATTGACTTCGAGCCTTTCAGGCCTATTAATGCATCTCTTT
ACCTCTGTGACAATAAGTTTCACACTGACGCTCTGAATGAACTGTTGGAG
TCTGATGACAAGTTTGGTTTTATTGTCATGGATGGTAATGGAACCCTTTT
TGGGACTCTAAGTGGTAACACCCGTGAGGTGCTTCACAGTTCAGTGTTGA
CCTTCCCAAGAACATGGAAGAAGTGGACAGTCAGCCCTT
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